© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2548.t1 |
| Gene name | |
| Location | scaffold_03:304564..306487 |
| Strand | - |
| Gene length (bp) | 1923 |
| Transcript length (bp) | 1743 |
| Coding sequence length (bp) | 1743 |
| Protein length (aa) | 581 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 1.5E-52 | 115 | 449 |
| PF00070 | Pyr_redox | Pyridine nucleotide-disulphide oxidoreductase | 4.9E-09 | 279 | 360 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 77 | 99 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 164.95 | 99.19 | 230.71 |
| 5d_25C | Five days - 25 degrees Celsius | 94.17 | 57.05 | 131.28 |
| 7d_25C | Seven days - 25 degrees Celsius | 98.82 | 59.45 | 138.19 |
| 10d_25C | Ten days - 25 degrees Celsius | 64.00 | 38.81 | 89.19 |
| 7d_15C | Seven days - 15 degrees Celsius | 116.10 | 70.79 | 161.40 |
| 7d_30C | Seven days - 30 degrees Celsius | 63.83 | 38.79 | 88.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.004450 | yes |
| 3d_25C | 7d_25C | 0.011993 | yes |
| 3d_25C | 7d_15C | 0.106191 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.880317 | no |
| 5d_25C | 7d_15C | 0.386714 | no |
| 5d_25C | 7d_30C | 0.070531 | no |
| 5d_25C | 10d_25C | 0.065980 | no |
| 7d_25C | 7d_15C | 0.535549 | no |
| 7d_25C | 7d_30C | 0.038966 | yes |
| 7d_25C | 10d_25C | 0.036724 | yes |
| 7d_15C | 7d_30C | 0.001804 | yes |
| 7d_15C | 10d_25C | 0.002297 | yes |
| 7d_30C | 10d_25C | 0.994184 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2548.t1 MAGSTLAIRKMAPSMQLSSMTRRSMSTQLALRAKPMRSTKLIQSVSRITRRGYADAASKPTPSPAPKPKKRFRAL RWAWRLTWLSAIGLTGAVAYSIFDLRQPPDQAPPDPSKKTLVILGTGWGSVSLLKKLDTENYNVIVVSPRNYFLF TPLLPSCTTGLIEHRSIMEPIRNILRHKKASVQFYEAEATKIDYEKRIVYISDDSEVKGDISHTEVPFDMLVIGV GAENATFGIPGVRENSCFLKEVGDAQKIRKRIMDCIETACFKDQTEDEVKRLLHMVVVGGGPTGVEFAGELQDFF NDDLRKWIPEIKDNFHVTLVEALPNVLPMFSKQLIDYTESTFKEEEISIRTKTMVKQVTDKYIQAEVTRPDGTKE LETIPYGLLVWATGNAIRSVVRDLMSQIPAQAESRRGLAVNEYLVVNGTDNVWAVGDCAIANYAPTAQVAGQEGA FLGRLFNTMAKTEALQQELETLSERQSHAKGDEERNLIFDEIRERQKQLRRNKQIGPFQYSHQGSLAYIGKERAV ADISWLSGNIASGGTMTYLFWRSAYLSMCFSTRNRVLVCLDWVKARLFGRDVSRE* |
| Coding | >Pro_DTO377G3_2|g2548.t1 ATGGCTGGCAGCACGCTAGCAATTCGCAAGATGGCTCCGTCCATGCAGCTGTCGTCCATGACGCGCAGATCGATG TCCACGCAGCTGGCCCTTCGCGCAAAGCCGATGCGGTCGACCAAACTTATCCAGTCTGTGTCGCGCATCACTCGT CGTGGCTACGCCGATGCTGCCTCGAAGCCTACCCCTTCACCCGCCCCGAAGCCTAAGAAGCGTTTCAGAGCTCTG CGTTGGGCCTGGCGGTTGACTTGGCTCTCCGCCATCGGTCTAACCGGTGCTGTCGCATACAGCATCTTCGACCTC CGCCAACCCCCGGACCAGGCCCCTCCTGACCCATCAAAGAAGACTCTGGTCATTCTTGGAACTGGCTGGGGCTCC GTTTCCCTCCTGAAGAAGCTTGACACCGAGAACTACAATGTTATCGTCGTCTCTCCCCGTAATTACTTCCTCTTC ACTCCCTTGCTGCCCTCATGTACCACCGGTTTGATTGAGCACCGCTCGATCATGGAGCCTATTCGAAATATCCTG CGCCACAAGAAGGCCAGTGTTCAGTTCTACGAGGCCGAGGCAACCAAGATCGACTACGAGAAGCGGATTGTGTAT ATCAGTGATGATTCGGAAGTTAAGGGTGATATCTCGCACACCGAAGTTCCCTTCGACATGCTCGTGATCGGTGTT GGCGCCGAGAACGCGACTTTCGGTATTCCCGGTGTTCGTGAGAACTCCTGCTTCCTGAAGGAAGTTGGTGATGCC CAAAAAATTCGTAAGCGTATTATGGACTGTATCGAGACTGCCTGTTTCAAGGATCAGACCGAGGACGAGGTCAAG CGTCTGCTGCACATGGTTGTGGTGGGCGGTGGCCCCACTGGTGTTGAATTCGCCGGTGAACTCCAGGACTTCTTC AATGATGACTTGAGGAAGTGGATTCCCGAAATCAAGGACAACTTCCACGTCACTCTCGTCGAGGCTCTACCCAAT GTTCTGCCCATGTTCTCAAAGCAACTGATTGACTATACCGAATCCACCTTCAAGGAGGAGGAGATCTCCATCCGC ACCAAGACCATGGTGAAGCAGGTTACCGACAAGTACATCCAGGCCGAGGTGACCAGGCCCGACGGTACCAAGGAA CTTGAGACTATCCCTTACGGTCTTCTCGTCTGGGCCACCGGTAATGCTATCCGCAGCGTCGTCCGCGACCTCATG TCCCAGATCCCTGCTCAGGCCGAGTCCCGCCGCGGTCTCGCTGTCAACGAATACCTCGTCGTGAACGGTACCGAC AATGTCTGGGCCGTCGGCGACTGCGCCATTGCCAACTACGCCCCGACCGCCCAGGTTGCCGGCCAGGAAGGTGCT TTCTTGGGCCGCCTCTTCAACACCATGGCCAAGACCGAGGCTCTCCAGCAAGAGTTGGAGACCCTGTCAGAGCGC CAGTCCCACGCCAAGGGCGACGAGGAGCGCAACCTGATTTTCGACGAGATCCGTGAGCGCCAGAAGCAGCTCCGC CGCAACAAGCAGATCGGTCCCTTCCAGTACTCGCACCAGGGCTCCTTGGCCTACATCGGTAAGGAGCGTGCCGTG GCCGATATCAGCTGGCTGAGCGGCAACATCGCCAGCGGTGGTACTATGACCTACCTGTTCTGGCGCAGTGCCTAC CTGAGCATGTGCTTCAGCACTCGCAACCGTGTCCTTGTCTGCCTCGACTGGGTCAAGGCTCGTCTCTTTGGTCGT GATGTCTCGCGGGAGTAG |
| Transcript | >Pro_DTO377G3_2|g2548.t1 ATGGCTGGCAGCACGCTAGCAATTCGCAAGATGGCTCCGTCCATGCAGCTGTCGTCCATGACGCGCAGATCGATG TCCACGCAGCTGGCCCTTCGCGCAAAGCCGATGCGGTCGACCAAACTTATCCAGTCTGTGTCGCGCATCACTCGT CGTGGCTACGCCGATGCTGCCTCGAAGCCTACCCCTTCACCCGCCCCGAAGCCTAAGAAGCGTTTCAGAGCTCTG CGTTGGGCCTGGCGGTTGACTTGGCTCTCCGCCATCGGTCTAACCGGTGCTGTCGCATACAGCATCTTCGACCTC CGCCAACCCCCGGACCAGGCCCCTCCTGACCCATCAAAGAAGACTCTGGTCATTCTTGGAACTGGCTGGGGCTCC GTTTCCCTCCTGAAGAAGCTTGACACCGAGAACTACAATGTTATCGTCGTCTCTCCCCGTAATTACTTCCTCTTC ACTCCCTTGCTGCCCTCATGTACCACCGGTTTGATTGAGCACCGCTCGATCATGGAGCCTATTCGAAATATCCTG CGCCACAAGAAGGCCAGTGTTCAGTTCTACGAGGCCGAGGCAACCAAGATCGACTACGAGAAGCGGATTGTGTAT ATCAGTGATGATTCGGAAGTTAAGGGTGATATCTCGCACACCGAAGTTCCCTTCGACATGCTCGTGATCGGTGTT GGCGCCGAGAACGCGACTTTCGGTATTCCCGGTGTTCGTGAGAACTCCTGCTTCCTGAAGGAAGTTGGTGATGCC CAAAAAATTCGTAAGCGTATTATGGACTGTATCGAGACTGCCTGTTTCAAGGATCAGACCGAGGACGAGGTCAAG CGTCTGCTGCACATGGTTGTGGTGGGCGGTGGCCCCACTGGTGTTGAATTCGCCGGTGAACTCCAGGACTTCTTC AATGATGACTTGAGGAAGTGGATTCCCGAAATCAAGGACAACTTCCACGTCACTCTCGTCGAGGCTCTACCCAAT GTTCTGCCCATGTTCTCAAAGCAACTGATTGACTATACCGAATCCACCTTCAAGGAGGAGGAGATCTCCATCCGC ACCAAGACCATGGTGAAGCAGGTTACCGACAAGTACATCCAGGCCGAGGTGACCAGGCCCGACGGTACCAAGGAA CTTGAGACTATCCCTTACGGTCTTCTCGTCTGGGCCACCGGTAATGCTATCCGCAGCGTCGTCCGCGACCTCATG TCCCAGATCCCTGCTCAGGCCGAGTCCCGCCGCGGTCTCGCTGTCAACGAATACCTCGTCGTGAACGGTACCGAC AATGTCTGGGCCGTCGGCGACTGCGCCATTGCCAACTACGCCCCGACCGCCCAGGTTGCCGGCCAGGAAGGTGCT TTCTTGGGCCGCCTCTTCAACACCATGGCCAAGACCGAGGCTCTCCAGCAAGAGTTGGAGACCCTGTCAGAGCGC CAGTCCCACGCCAAGGGCGACGAGGAGCGCAACCTGATTTTCGACGAGATCCGTGAGCGCCAGAAGCAGCTCCGC CGCAACAAGCAGATCGGTCCCTTCCAGTACTCGCACCAGGGCTCCTTGGCCTACATCGGTAAGGAGCGTGCCGTG GCCGATATCAGCTGGCTGAGCGGCAACATCGCCAGCGGTGGTACTATGACCTACCTGTTCTGGCGCAGTGCCTAC CTGAGCATGTGCTTCAGCACTCGCAACCGTGTCCTTGTCTGCCTCGACTGGGTCAAGGCTCGTCTCTTTGGTCGT GATGTCTCGCGGGAGTAG |
| Gene | >Pro_DTO377G3_2|g2548.t1 ATGGCTGGCAGCACGCTAGCAATTCGCAAGATGGCTCCGTCCATGCAGCTGTCGTCCATGACGCGCAGATCGATG TCCACGCAGCTGGCCCTTCGCGCAAAGCCGATGCGGTCGACCAAACTTATCCAGTCTGTGTCGCGCATCACTCGT CGTGGCTACGCCGATGCTGCCTCGAAGCCTACCCCTTCACCCGCCCCGAAGCCTAAGAAGCGTTTCAGAGCTCTG CGTTGGGCCTGGCGGTTGACTTGGCTCTCCGCCATCGGTCTAACCGGTGCTGTCGCATACAGCATCTTCGACCTC CGCCAACCCCCGGACCAGGCCCCTCCTGACCCATCAAAGAAGACTCTGGTCATTCTTGGTATGTATCGGTCGCGA TTGTACCCCTACAGCCGACGTGTCGCTAACGCGACTGTGCTCGTTCAGGAACTGGCTGGGGCTCCGTTTCCCTCC TGAAGAAGCTTGACACCGAGAACTACAATGTTATCGTCGTCTCTCCCCGTAATTACTTCCTCTTCACTCCCTTGC TGCCCTCATGTACCACCGGTTTGATTGAGCACCGCTCGATCATGGAGCCTATTCGAAATATCCTGCGCCACAAGA AGGCCAGTGTTCAGTTCTACGAGGCCGAGGCAACCAAGATCGACTACGAGAAGCGGATTGTGTATATCAGTGATG ATTCGGAAGTTAAGGGTGATATCTCGCACACCGAAGTTCCCTTCGACATGCTCGTGATCGGTGTTGGCGCCGAGA ACGCGACTTTCGGTAGGATTCACTCTCGCATCTGAAACGATGCATTTTGGACTAATATCGTAACCTATAGGTATT CCCGGTGTTCGTGAGAACTCCTGCTTCCTGAAGGAAGTTGGTGATGCCCAAAAAATTCGTAAGCGTATTATGGAC TGTATCGAGACTGCCTGTTTCAAGGATCAGACCGAGGACGAGGTCAAGCGTCTGCTGCACATGGTTGTGGTGGGC GGTGGCCCCACTGGTGTTGAATTCGCCGGTGAACTCCAGGACTTCTTCAATGATGACTTGAGGAAGTGGATTCCC GAAATCAAGGACAACTTCCACGTCACTCTCGTCGAGGCTCTACCCAATGTTCTGCCCATGTTCTCAAAGCAACTG ATTGACTATACCGAATCCACCTTCAAGGAGGAGGAGATCTCCATCCGCACCAAGACCATGGTGAAGCAGGTTACC GACAAGTACATCCAGGCCGAGGTGACCAGGCCCGACGGTACCAAGGAACTTGAGACTATCCCTTACGGTCTTCTC GTCTGGGCCACCGGTAATGCTATCCGCAGCGTCGTCCGCGACCTCATGTCCCAGATCCCTGCTCAGGCCGAGTCC CGCCGCGGTCTCGCTGTCAACGAATACCTCGTCGTGAACGGTACCGACAATGTCTGGGCCGTCGGCGACTGCGCC ATTGCCAACTACGCCCCGACCGCCCAGGTTGCCGGCCAGGAAGGTGCTTTCTTGGGCCGCCTCTTCAACACCATG GCCAAGACCGAGGCTCTCCAGCAAGAGTTGGAGACCCTGTCAGAGCGCCAGTCCCACGCCAAGGGCGACGAGGAG CGCAACCTGATTTTCGACGAGATCCGTGAGCGCCAGAAGCAGCTCCGCCGCAACAAGCAGATCGGTCCCTTCCAG TACTCGCACCAGGGCTCCTTGGCCTACATCGGTAAGGAGCGTGCCGTGGCCGATATCAGCTGGCTGAGCGGCAAC ATCGCCAGCGGTGGTACTATGACCTACCTGTTCTGGCGCAGTGCCTACCTGAGCATGTGCTTCAGCAGTAAGTTC TAAGCTCTATCCAACACTGATTGAAAGTCATCATTAACATATAATCTAGCTCGCAACCGTGTCCTTGTCTGCCTC GACTGGGTCAAGGCTCGTCTCTTTGGTCGTGATGTCTCGCGGGAGTAG |