© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g254.t1 |
| Gene name | |
| Location | scaffold_01:661971..663625 |
| Strand | - |
| Gene length (bp) | 1654 |
| Transcript length (bp) | 1533 |
| Coding sequence length (bp) | 1533 |
| Protein length (aa) | 511 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00320 | GATA | GATA zinc finger | 2.7E-13 | 73 | 104 |
| PF00320 | GATA | GATA zinc finger | 2.2E-14 | 216 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0043565 | sequence-specific DNA binding | Yes |
| GO:0065007 | biological regulation | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0003677 | DNA binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0050789 | regulation of biological process | No |
| GO:0005488 | binding | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0003674 | molecular_function | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| GATA type zinc finger |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 41.12 | 24.15 | 58.10 |
| 5d_25C | Five days - 25 degrees Celsius | 56.20 | 33.74 | 78.67 |
| 7d_25C | Seven days - 25 degrees Celsius | 64.43 | 39.16 | 89.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 75.17 | 45.76 | 104.58 |
| 7d_15C | Seven days - 15 degrees Celsius | 74.97 | 45.51 | 104.43 |
| 7d_30C | Seven days - 30 degrees Celsius | 53.53 | 32.12 | 74.94 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.176561 | no |
| 3d_25C | 7d_25C | 0.038184 | yes |
| 3d_25C | 7d_15C | 0.005235 | yes |
| 3d_25C | 7d_30C | 0.273843 | no |
| 3d_25C | 10d_25C | 0.004045 | yes |
| 5d_25C | 7d_25C | 0.632239 | no |
| 5d_25C | 7d_15C | 0.216420 | no |
| 5d_25C | 7d_30C | 0.885880 | no |
| 5d_25C | 10d_25C | 0.212206 | no |
| 7d_25C | 7d_15C | 0.572088 | no |
| 7d_25C | 7d_30C | 0.475837 | no |
| 7d_25C | 10d_25C | 0.564691 | no |
| 7d_15C | 7d_30C | 0.132031 | no |
| 7d_15C | 10d_25C | 0.993865 | no |
| 7d_30C | 10d_25C | 0.125142 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g254.t1 MRQPSAEDLDAAQQLISSAQAGREHLADHYRDDGMGQGSGQSGSNQWIGHNEIPSEKTSPGSQKDTTFLGHSCSN CGTKSTPLWRRSPTGAMICNACGLYLKARNVARPTKRNRMQSEGAEKPPPPMRSHCGGSSEGGCKGSCPGGGSCN GTGGAEGCDGCPAYNNRIYKSAPRGAAAIQSSWGRNPAQDLEPVTQEEPPVKAPASADGTNTLVACQNCGTTVTP LWRRDEQGHPICNACGLYYKLHGCYRPTNMKKSIIKRRKRVVPALRDQSPTAATLSSNGSSASPEASPAALAHGH DDHYRYMSSEPTDHYPMMPGKSEDAPRVLHFAPPPVDFTGYNVSSVPLAHGLSISHGLPKPLGVERLGHSPAPQY GRRSASPNSINLPKKRTLAETATEALPAPSTLEAGSNQLPPIMSSANPTPPGRLSSISSILNQSDVRGEPRSDTN LGRPPPIHHSISPSPHPSQPLPGIASLGDSVDRRARLEREAEQMREMLRAKERELAEMRR* |
| Coding | >Pro_DTO377G3_2|g254.t1 ATGCGACAACCGTCCGCGGAGGATTTGGATGCTGCGCAGCAGTTGATCTCCTCAGCACAAGCAGGTCGTGAACAT CTAGCAGATCACTACCGGGACGATGGCATGGGGCAAGGATCGGGTCAATCTGGATCAAATCAATGGATTGGACAC AACGAAATCCCGAGCGAGAAAACATCCCCCGGCAGCCAAAAAGACACAACTTTTCTAGGGCATTCATGCAGTAAT TGCGGCACAAAAAGTACTCCTCTTTGGCGTCGTTCTCCCACGGGAGCCATGATCTGCAACGCCTGCGGTCTCTAC CTCAAAGCTCGCAATGTCGCTCGCCCCACGAAACGAAATCGGATGCAATCAGAAGGTGCCGAGAAGCCACCGCCT CCTATGCGGTCTCACTGTGGCGGTTCCTCGGAAGGAGGTTGCAAGGGGTCATGCCCTGGCGGTGGGAGTTGTAAT GGCACCGGTGGCGCAGAAGGATGCGATGGATGCCCGGCATACAACAACCGGATATACAAGTCCGCCCCCCGGGGA GCGGCTGCCATCCAATCTTCGTGGGGCCGTAACCCAGCACAAGACCTTGAGCCTGTGACGCAAGAGGAGCCACCG GTGAAGGCCCCTGCTTCTGCCGATGGCACTAATACATTGGTTGCTTGTCAAAATTGCGGCACGACTGTGACTCCT CTGTGGAGGCGCGATGAACAGGGCCACCCTATTTGCAACGCTTGTGGATTGTATTATAAGCTCCATGGATGCTAT CGCCCCACCAACATGAAAAAGTCCATCATCAAACGTCGCAAACGGGTTGTTCCCGCCCTACGAGATCAGTCTCCC ACCGCTGCTACCCTTTCCTCCAATGGCTCATCGGCATCCCCGGAGGCATCGCCTGCCGCCCTGGCGCATGGCCAT GATGATCACTATCGATATATGAGCAGCGAGCCTACGGATCACTACCCGATGATGCCTGGAAAATCCGAAGACGCA CCTCGAGTTTTACATTTTGCGCCACCGCCGGTTGATTTCACTGGTTACAATGTTTCATCCGTGCCTCTTGCACAT GGTCTCTCCATCTCTCACGGCCTACCTAAACCTTTGGGGGTGGAGCGGCTGGGGCATTCGCCCGCGCCTCAGTAC GGGCGACGGTCCGCCTCTCCAAATTCCATCAACCTCCCCAAGAAACGAACATTGGCCGAGACTGCGACAGAGGCT CTACCCGCTCCATCTACATTGGAAGCAGGATCCAACCAACTGCCTCCGATTATGTCTTCGGCCAATCCTACTCCC CCCGGTCGTCTCAGCTCTATCTCGTCTATTCTGAACCAATCAGATGTTCGGGGCGAGCCTCGCTCGGATACCAAT CTGGGACGTCCACCTCCTATTCACCATTCTATCTCCCCTTCACCTCACCCGTCACAGCCTTTGCCTGGAATTGCA TCTCTTGGAGACTCGGTTGATCGCCGTGCCCGACTTGAACGCGAAGCTGAGCAGATGCGCGAGATGCTCAGAGCA AAGGAGCGCGAGCTGGCAGAGATGAGACGATAG |
| Transcript | >Pro_DTO377G3_2|g254.t1 ATGCGACAACCGTCCGCGGAGGATTTGGATGCTGCGCAGCAGTTGATCTCCTCAGCACAAGCAGGTCGTGAACAT CTAGCAGATCACTACCGGGACGATGGCATGGGGCAAGGATCGGGTCAATCTGGATCAAATCAATGGATTGGACAC AACGAAATCCCGAGCGAGAAAACATCCCCCGGCAGCCAAAAAGACACAACTTTTCTAGGGCATTCATGCAGTAAT TGCGGCACAAAAAGTACTCCTCTTTGGCGTCGTTCTCCCACGGGAGCCATGATCTGCAACGCCTGCGGTCTCTAC CTCAAAGCTCGCAATGTCGCTCGCCCCACGAAACGAAATCGGATGCAATCAGAAGGTGCCGAGAAGCCACCGCCT CCTATGCGGTCTCACTGTGGCGGTTCCTCGGAAGGAGGTTGCAAGGGGTCATGCCCTGGCGGTGGGAGTTGTAAT GGCACCGGTGGCGCAGAAGGATGCGATGGATGCCCGGCATACAACAACCGGATATACAAGTCCGCCCCCCGGGGA GCGGCTGCCATCCAATCTTCGTGGGGCCGTAACCCAGCACAAGACCTTGAGCCTGTGACGCAAGAGGAGCCACCG GTGAAGGCCCCTGCTTCTGCCGATGGCACTAATACATTGGTTGCTTGTCAAAATTGCGGCACGACTGTGACTCCT CTGTGGAGGCGCGATGAACAGGGCCACCCTATTTGCAACGCTTGTGGATTGTATTATAAGCTCCATGGATGCTAT CGCCCCACCAACATGAAAAAGTCCATCATCAAACGTCGCAAACGGGTTGTTCCCGCCCTACGAGATCAGTCTCCC ACCGCTGCTACCCTTTCCTCCAATGGCTCATCGGCATCCCCGGAGGCATCGCCTGCCGCCCTGGCGCATGGCCAT GATGATCACTATCGATATATGAGCAGCGAGCCTACGGATCACTACCCGATGATGCCTGGAAAATCCGAAGACGCA CCTCGAGTTTTACATTTTGCGCCACCGCCGGTTGATTTCACTGGTTACAATGTTTCATCCGTGCCTCTTGCACAT GGTCTCTCCATCTCTCACGGCCTACCTAAACCTTTGGGGGTGGAGCGGCTGGGGCATTCGCCCGCGCCTCAGTAC GGGCGACGGTCCGCCTCTCCAAATTCCATCAACCTCCCCAAGAAACGAACATTGGCCGAGACTGCGACAGAGGCT CTACCCGCTCCATCTACATTGGAAGCAGGATCCAACCAACTGCCTCCGATTATGTCTTCGGCCAATCCTACTCCC CCCGGTCGTCTCAGCTCTATCTCGTCTATTCTGAACCAATCAGATGTTCGGGGCGAGCCTCGCTCGGATACCAAT CTGGGACGTCCACCTCCTATTCACCATTCTATCTCCCCTTCACCTCACCCGTCACAGCCTTTGCCTGGAATTGCA TCTCTTGGAGACTCGGTTGATCGCCGTGCCCGACTTGAACGCGAAGCTGAGCAGATGCGCGAGATGCTCAGAGCA AAGGAGCGCGAGCTGGCAGAGATGAGACGATAG |
| Gene | >Pro_DTO377G3_2|g254.t1 ATGCGACAACCGTCCGCGGAGGATTTGGATGCTGCGCAGCAGTTGATCTCCTCAGCACAAGCAGGTCGTGAACAT CTAGCAGATCACTACCGGGACGATGGCATGGGGCAAGGATCGGGTCAATCTGGATCAAATCAATGGATTGGACAC AACGAAATCCCGAGCGAGAAAACATCCCCCGGCAGCCAAAAAGACACAACTTTTCTAGGGCATTCATGCAGGTGA GTTTCGACTGGGCCTCGGTTGATACTTAGGCTATAAAGACTGACCCCGTCTCTTTTATTCAGTAATTGCGGCACA AAAAGTACTCCTCTTTGGCGTCGTTCTCCCACGGGAGCCATGATCTGCAACGCCTGCGGTCTCTACCTCAAAGCT CGCAATGTCGCTCGCCCCACGAAACGAAATCGGATGCAATCAGAAGGTGCCGAGAAGCCACCGCCTCCTATGCGG TCTCACTGTGGCGGTTCCTCGGAAGGAGGTTGCAAGGGGTCATGCCCTGGCGGTGGGAGTTGTAATGGCACCGGT GGCGCAGAAGGATGCGATGGATGCCCGGCATACAACAACCGGATATACAAGTCCGCCCCCCGGGGAGCGGCTGCC ATCCAATCTTCGTGGGGCCGTAACCCAGCACAAGACCTTGAGCCTGTGACGCAAGAGGAGCCACCGGTGAAGGCC CCTGCTTCTGCCGATGGCACTAATACATTGGTTGCTTGTCAAAATTGCGGCACGACTGTGACTCCTCTGTGGAGG CGCGATGAACAGGGCCACCCTATTTGCAACGCTTGTGGTAAGTTTGAGTTTCCATATAGACTTGATGATCTGATT TCTCTAACACAAGACAGGATTGTATTATAAGCTCCATGGATGCTATCGCCCCACCAACATGAAAAAGTCCATCAT CAAACGTCGCAAACGGGTTGTTCCCGCCCTACGAGATCAGTCTCCCACCGCTGCTACCCTTTCCTCCAATGGCTC ATCGGCATCCCCGGAGGCATCGCCTGCCGCCCTGGCGCATGGCCATGATGATCACTATCGATATATGAGCAGCGA GCCTACGGATCACTACCCGATGATGCCTGGAAAATCCGAAGACGCACCTCGAGTTTTACATTTTGCGCCACCGCC GGTTGATTTCACTGGTTACAATGTTTCATCCGTGCCTCTTGCACATGGTCTCTCCATCTCTCACGGCCTACCTAA ACCTTTGGGGGTGGAGCGGCTGGGGCATTCGCCCGCGCCTCAGTACGGGCGACGGTCCGCCTCTCCAAATTCCAT CAACCTCCCCAAGAAACGAACATTGGCCGAGACTGCGACAGAGGCTCTACCCGCTCCATCTACATTGGAAGCAGG ATCCAACCAACTGCCTCCGATTATGTCTTCGGCCAATCCTACTCCCCCCGGTCGTCTCAGCTCTATCTCGTCTAT TCTGAACCAATCAGATGTTCGGGGCGAGCCTCGCTCGGATACCAATCTGGGACGTCCACCTCCTATTCACCATTC TATCTCCCCTTCACCTCACCCGTCACAGCCTTTGCCTGGAATTGCATCTCTTGGAGACTCGGTTGATCGCCGTGC CCGACTTGAACGCGAAGCTGAGCAGATGCGCGAGATGCTCAGAGCAAAGGAGCGCGAGCTGGCAGAGATGAGACG ATAG |