© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2539.t1 |
| Gene name | |
| Location | scaffold_03:277590..279329 |
| Strand | - |
| Gene length (bp) | 1739 |
| Transcript length (bp) | 1449 |
| Coding sequence length (bp) | 1449 |
| Protein length (aa) | 483 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.9E-18 | 93 | 166 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.2E-20 | 187 | 257 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.9E-16 | 314 | 377 |
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.5E-04 | 84 | 176 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 21.51 | 11.07 | 31.94 |
| 5d_25C | Five days - 25 degrees Celsius | 20.62 | 10.50 | 30.75 |
| 7d_25C | Seven days - 25 degrees Celsius | 18.68 | 9.26 | 28.10 |
| 10d_25C | Ten days - 25 degrees Celsius | 20.42 | 10.42 | 30.43 |
| 7d_15C | Seven days - 15 degrees Celsius | 16.49 | 7.88 | 25.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 45.56 | 26.54 | 64.59 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.922076 | no |
| 3d_25C | 7d_25C | 0.689648 | no |
| 3d_25C | 7d_15C | 0.401600 | no |
| 3d_25C | 7d_30C | 0.001278 | yes |
| 3d_25C | 10d_25C | 0.899619 | no |
| 5d_25C | 7d_25C | 0.791445 | no |
| 5d_25C | 7d_15C | 0.490428 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.983643 | no |
| 7d_25C | 7d_15C | 0.740856 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.815685 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.512158 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2539.t1 MAENAQASTPSSLPPAPQPAVGQAQQYDAPQGNGQGNQSHMPPPPRPPVIIPQNTNPIPTAMTSPMSGVDMMSPT SAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNGQFTTKGHNYGFVEFDDPGAAER AMQTLNGRRIHQSEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRS RGYGFVAFRDRAEADKALNSMDGEWLGSRAIRCNWANQKGQPSISQQQALVAMGMTPTTPFGHHHFPTHGIQSYD MVAQQTPQWQTTCYVGNLTPYTTQNDLVPLFQNFGYVLETRLQADRGFAFVKMDSHENAASAICQLNGYNVNGRP LKCSWGKDRPPTGQFDNFSPQQGNAAPFNNSPAGFFPQYGGPANPMNQGPAPAGRGWDQQPNNFNGPAMAGQGYA QAGNAGGYGRGQAMSPSGNWDQSTNFNGGYQA* |
| Coding | >Pro_DTO377G3_2|g2539.t1 ATGGCTGAAAACGCTCAAGCCTCGACCCCCTCGTCTCTTCCCCCCGCGCCTCAACCCGCTGTCGGTCAAGCCCAA CAGTACGATGCTCCTCAGGGCAATGGCCAGGGCAACCAGTCCCATATGCCCCCGCCCCCGCGCCCCCCGGTGATA ATTCCCCAGAATACCAATCCGATTCCCACCGCCATGACCTCTCCCATGTCCGGAGTTGATATGATGTCCCCCACA AGCGCTGGTGGATATGTCCGCCGAGCGGCTCCTGAACCAAACAAGAGAGCCCTGTATGTGGGTGGGCTGGACCCG AGGGTCACTGAGGACATCCTCAAGCAGATCTTTGAAACCACTGGCCACGTGGTCAGCGTGAAGATCATTCCCGAC AAGAATGGGCAATTCACCACCAAGGGCCACAACTACGGTTTCGTGGAGTTCGATGACCCAGGTGCGGCCGAGAGG GCTATGCAAACCCTGAATGGTCGCAGAATCCACCAATCGGAAATCCGTGTCAACTGGGCGTACCAGTCCAACACT ACCAGCAAGGAAGATACTTCTAACCACTTCCATATCTTCGTCGGCGACTTGAGCAATGAAGTCAACGATGAAGTC CTGACTCAAGCATTCTCTGCTTTTGGTTCAGTATCCGAAGCACGTGTGATGTGGGACATGAAGACTGGTCGCTCC CGTGGATACGGCTTCGTTGCTTTCCGCGACCGCGCAGAGGCAGACAAGGCCCTCAACTCAATGGATGGTGAATGG CTCGGTTCTCGTGCTATCCGTTGCAACTGGGCCAACCAGAAGGGTCAACCTTCAATCTCCCAGCAGCAGGCACTG GTTGCTATGGGCATGACGCCTACCACTCCTTTCGGACACCACCACTTCCCAACCCACGGCATTCAGAGCTACGAT ATGGTTGCTCAGCAGACTCCCCAGTGGCAGACTACTTGCTACGTAGGCAATCTCACACCTTATACCACCCAGAAT GACTTGGTTCCCCTGTTCCAAAACTTCGGCTATGTCCTTGAAACTCGCCTCCAGGCCGATCGTGGCTTTGCATTC GTGAAGATGGATTCGCATGAAAATGCAGCCTCTGCGATATGCCAGCTGAACGGCTACAACGTCAACGGCCGTCCT CTGAAGTGCAGTTGGGGTAAGGATCGTCCTCCCACCGGCCAATTCGACAACTTTTCTCCCCAGCAGGGCAACGCC GCTCCCTTCAACAACAGCCCTGCCGGTTTCTTCCCCCAATACGGTGGTCCCGCGAACCCCATGAATCAAGGTCCT GCCCCTGCTGGTCGAGGCTGGGATCAACAACCCAACAATTTCAATGGACCTGCTATGGCTGGCCAGGGCTACGCC CAGGCAGGTAATGCCGGGGGCTACGGCCGTGGCCAAGCCATGTCCCCGTCCGGCAACTGGGACCAATCCACCAAC TTCAACGGAGGCTACCAGGCGTAG |
| Transcript | >Pro_DTO377G3_2|g2539.t1 ATGGCTGAAAACGCTCAAGCCTCGACCCCCTCGTCTCTTCCCCCCGCGCCTCAACCCGCTGTCGGTCAAGCCCAA CAGTACGATGCTCCTCAGGGCAATGGCCAGGGCAACCAGTCCCATATGCCCCCGCCCCCGCGCCCCCCGGTGATA ATTCCCCAGAATACCAATCCGATTCCCACCGCCATGACCTCTCCCATGTCCGGAGTTGATATGATGTCCCCCACA AGCGCTGGTGGATATGTCCGCCGAGCGGCTCCTGAACCAAACAAGAGAGCCCTGTATGTGGGTGGGCTGGACCCG AGGGTCACTGAGGACATCCTCAAGCAGATCTTTGAAACCACTGGCCACGTGGTCAGCGTGAAGATCATTCCCGAC AAGAATGGGCAATTCACCACCAAGGGCCACAACTACGGTTTCGTGGAGTTCGATGACCCAGGTGCGGCCGAGAGG GCTATGCAAACCCTGAATGGTCGCAGAATCCACCAATCGGAAATCCGTGTCAACTGGGCGTACCAGTCCAACACT ACCAGCAAGGAAGATACTTCTAACCACTTCCATATCTTCGTCGGCGACTTGAGCAATGAAGTCAACGATGAAGTC CTGACTCAAGCATTCTCTGCTTTTGGTTCAGTATCCGAAGCACGTGTGATGTGGGACATGAAGACTGGTCGCTCC CGTGGATACGGCTTCGTTGCTTTCCGCGACCGCGCAGAGGCAGACAAGGCCCTCAACTCAATGGATGGTGAATGG CTCGGTTCTCGTGCTATCCGTTGCAACTGGGCCAACCAGAAGGGTCAACCTTCAATCTCCCAGCAGCAGGCACTG GTTGCTATGGGCATGACGCCTACCACTCCTTTCGGACACCACCACTTCCCAACCCACGGCATTCAGAGCTACGAT ATGGTTGCTCAGCAGACTCCCCAGTGGCAGACTACTTGCTACGTAGGCAATCTCACACCTTATACCACCCAGAAT GACTTGGTTCCCCTGTTCCAAAACTTCGGCTATGTCCTTGAAACTCGCCTCCAGGCCGATCGTGGCTTTGCATTC GTGAAGATGGATTCGCATGAAAATGCAGCCTCTGCGATATGCCAGCTGAACGGCTACAACGTCAACGGCCGTCCT CTGAAGTGCAGTTGGGGTAAGGATCGTCCTCCCACCGGCCAATTCGACAACTTTTCTCCCCAGCAGGGCAACGCC GCTCCCTTCAACAACAGCCCTGCCGGTTTCTTCCCCCAATACGGTGGTCCCGCGAACCCCATGAATCAAGGTCCT GCCCCTGCTGGTCGAGGCTGGGATCAACAACCCAACAATTTCAATGGACCTGCTATGGCTGGCCAGGGCTACGCC CAGGCAGGTAATGCCGGGGGCTACGGCCGTGGCCAAGCCATGTCCCCGTCCGGCAACTGGGACCAATCCACCAAC TTCAACGGAGGCTACCAGGCGTAG |
| Gene | >Pro_DTO377G3_2|g2539.t1 ATGGCTGAAAACGCTCAAGCCTCGACCCCCTCGTCTCTTCCCCCCGCGCCTCAACCCGCTGTCGGTCAAGCCCAA CAGTACGATGCTCCTCAGGGCAATGGCCAGGGCAACCAGTCCCATATGCCCCCGCCCCCGCGCCCCCCGGTGATA ATTCCCCAGAATACCAATCCGATTCCCACCGCCATGACCTCTCCCATGTCCGGAGTTGATATGATGTCCCCCACA AGCGCTGGTGGATATGTCCGCCGAGCGGCTCCTGAACCAAACAAGAGAGCCCTGTATGTGGGTGGGCTGGACCCG AGGGTCACTGAGGACATCCTCAAGCAGATCTTTGAAACCACTGGCCACGTGGTCAGCGTGAAGATCATTCCCGAC AAGAATGTGAGTTCTCCTGACAGACAGCCCCCCTGCATATCCGCCCCCTGAGTTGTTGGAAATGCTCTCTGGAGC TCTTATCTGGGATACCATTGCTAGTCCTTGATGGAATACTGGTTGCTGACTGTTTTACTCATTCCAGGGGCAATT CACCACCAAGGGCCACAACTACGGTTTCGTGGAGTTCGATGACCCAGGTGCGGCCGAGAGGGCTATGCAAACCCT GAATGGTCGCAGAATCCACCAATCGGTAAGTTTCCTTTCGTTCCTGGTATTCTGTGGCTGTATCTAATTGCCTCA GGAAATCCGTGTCAACTGGGCGTACCAGTCCAACACTACCAGCAAGGAAGATACTTCTAACCACTTCCATATCTT CGTCGGCGACTTGAGCAATGAAGTCAACGATGAAGTCCTGACTCAAGCATTCTCTGCTTTTGGTTCAGTATCCGA AGCACGTGTGATGTGGGACATGAAGACTGGTCGCTCCCGTGGATACGGCTTCGTTGCTTTCCGCGACCGCGCAGA GGCAGACAAGGCCCTCAACTCAATGGATGGTGAATGGCTCGGTTCTCGTGCTATCCGTTGCAACTGGGCCAACCA GAAGGGTCAACCTTCAATCTCCCAGCAGCAGGCACTGGTTGCTATGGGCATGACGCCTACCACTCCTTTCGGACA CCACCACTTCCCAACCCACGGCATTCAGAGCTACGATATGGTTGCTCAGCAGACTCCCCAGTGGCAGACTACTTG CTACGTAGGCAATCTCACACCTTATACCACCCAGAATGACTTGGTTCCCCTGTTCCAAAACTTCGGCTATGTCCT TGAAACTCGCCTCCAGGCCGATCGTGGCTTTGCATTCGTGAAGATGGATTCGCATGAAAATGCAGCCTCTGCGAT ATGCCAGCTGAACGGCTACAACGTCAACGGCCGTCCTCTGAAGTGCAGTGTAAGTTATTGCTATTCCTGTGATTT CCCGGCTTATTTACTCACTATCGCAGTGGGGTAAGGATCGTCCTCCCACCGGCCAATTCGACAACTTTTCTCCCC AGCAGGGCAACGCCGCTCCCTTCAACAACAGCCCTGCCGGTTTCTTCCCCCAATACGGTGGTCCCGCGAACCCCA TGAATCAAGGTGAGCCTAGTATTCGTCGTATCTCTCGGCACTCGCTTACTGGTGTAATAGGTCCTGCCCCTGCTG GTCGAGGCTGGGATCAACAACCCAACAATTTCAATGGACCTGCTATGGCTGGCCAGGGCTACGCCCAGGCAGGTA ATGCCGGGGGCTACGGCCGTGGCCAAGCCATGTCCCCGTCCGGCAACTGGGACCAATCCACCAACTTCAACGGAG GCTACCAGGCGTAG |