© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2533.t1 |
| Gene name | |
| Location | scaffold_03:267218..267598 |
| Strand | + |
| Gene length (bp) | 380 |
| Transcript length (bp) | 267 |
| Coding sequence length (bp) | 267 |
| Protein length (aa) | 89 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 22 | 17 |
| 2 | 32 | 50 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 873.14 | 515.30 | 1230.97 |
| 5d_25C | Five days - 25 degrees Celsius | 890.76 | 530.81 | 1250.71 |
| 7d_25C | Seven days - 25 degrees Celsius | 957.47 | 564.89 | 1350.04 |
| 10d_25C | Ten days - 25 degrees Celsius | 1218.79 | 741.46 | 1696.12 |
| 7d_15C | Seven days - 15 degrees Celsius | 1143.98 | 692.75 | 1595.22 |
| 7d_30C | Seven days - 30 degrees Celsius | 850.35 | 499.00 | 1201.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.957296 | no |
| 3d_25C | 7d_25C | 0.770831 | no |
| 3d_25C | 7d_15C | 0.255101 | no |
| 3d_25C | 7d_30C | 0.942488 | no |
| 3d_25C | 10d_25C | 0.142716 | no |
| 5d_25C | 7d_25C | 0.826039 | no |
| 5d_25C | 7d_15C | 0.293447 | no |
| 5d_25C | 7d_30C | 0.893696 | no |
| 5d_25C | 10d_25C | 0.165913 | no |
| 7d_25C | 7d_15C | 0.496797 | no |
| 7d_25C | 7d_30C | 0.687148 | no |
| 7d_25C | 10d_25C | 0.321637 | no |
| 7d_15C | 7d_30C | 0.203093 | no |
| 7d_15C | 10d_25C | 0.840083 | no |
| 7d_30C | 10d_25C | 0.107312 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2533.t1 MVHKVLFWGGFGIAVRLWQLGIEMRPILAKESLWVYPLFAGVGGSFGYWLQGVESRQLKMLAQRREAILEKRRRR DAKPEGGVLAAAS* |
| Coding | >Pro_DTO377G3_2|g2533.t1 ATGGTTCACAAAGTACTCTTCTGGGGCGGCTTCGGCATTGCCGTCCGCCTTTGGCAACTCGGTATCGAGATGCGT CCGATCCTTGCCAAGGAATCCCTCTGGGTCTATCCTCTCTTCGCCGGTGTTGGTGGAAGCTTTGGTTACTGGCTT CAGGGTGTTGAGAGCAGACAATTGAAGATGCTTGCACAGCGCCGTGAGGCCATTCTCGAGAAGCGTCGGCGGCGG GATGCGAAGCCCGAGGGTGGTGTCCTGGCTGCTGCATCATAA |
| Transcript | >Pro_DTO377G3_2|g2533.t1 ATGGTTCACAAAGTACTCTTCTGGGGCGGCTTCGGCATTGCCGTCCGCCTTTGGCAACTCGGTATCGAGATGCGT CCGATCCTTGCCAAGGAATCCCTCTGGGTCTATCCTCTCTTCGCCGGTGTTGGTGGAAGCTTTGGTTACTGGCTT CAGGGTGTTGAGAGCAGACAATTGAAGATGCTTGCACAGCGCCGTGAGGCCATTCTCGAGAAGCGTCGGCGGCGG GATGCGAAGCCCGAGGGTGGTGTCCTGGCTGCTGCATCATAA |
| Gene | >Pro_DTO377G3_2|g2533.t1 ATGGTTCACAAAGTACTCTTCTGGGGCGGCTTCGGTACGTCACATCTCCTTCCCCAGCTTTCAATCTATCACAAG AGCACGCTGCTTGGTAGCACGATTGTTCAAGTTATTTATATGCCATTGGAACTAACCGTGTTGATCCGACAGGCA TTGCCGTCCGCCTTTGGCAACTCGGTATCGAGATGCGTCCGATCCTTGCCAAGGAATCCCTCTGGGTCTATCCTC TCTTCGCCGGTGTTGGTGGAAGCTTTGGTTACTGGCTTCAGGGTGTTGAGAGCAGACAATTGAAGATGCTTGCAC AGCGCCGTGAGGCCATTCTCGAGAAGCGTCGGCGGCGGGATGCGAAGCCCGAGGGTGGTGTCCTGGCTGCTGCAT CATAA |