Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2528.t1
Gene name
Locationscaffold_03:257048..258618
Strand-
Gene length (bp)1570
Transcript length (bp)1323
Coding sequence length (bp)1323
Protein length (aa) 441

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00009 GTP_EFTU Elongation factor Tu GTP binding domain 2.6E-55 49 242
PF03143 GTP_EFTU_D3 Elongation factor Tu C-terminal domain 1.2E-25 343 438
PF03144 GTP_EFTU_D2 Elongation factor Tu domain 2 1.9E-17 266 337
PF01926 MMR_HSR1 50S ribosome-binding GTPase 2.0E-05 54 173

GO

GO Term Description Terminal node
GO:0005525 GTP binding Yes
GO:0003924 GTPase activity Yes
GO:0036094 small molecule binding No
GO:0003824 catalytic activity No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0043167 ion binding No
GO:0017076 purine nucleotide binding No
GO:0097367 carbohydrate derivative binding No
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides No
GO:0016462 pyrophosphatase activity No
GO:0000166 nucleotide binding No
GO:0005488 binding No
GO:0017111 nucleoside-triphosphatase activity No
GO:0003674 molecular_function No
GO:0032561 guanyl ribonucleotide binding No
GO:0019001 guanyl nucleotide binding No
GO:0097159 organic cyclic compound binding No
GO:0032553 ribonucleotide binding No
GO:0032555 purine ribonucleotide binding No
GO:0016787 hydrolase activity No
GO:1901363 heterocyclic compound binding No
GO:0043168 anion binding No
GO:0016817 hydrolase activity, acting on acid anhydrides No
GO:1901265 nucleoside phosphate binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 254.18 153.06 355.30
5d_25C Five days - 25 degrees Celsius 432.43 249.58 615.28
7d_25C Seven days - 25 degrees Celsius 494.94 282.46 707.42
10d_25C Ten days - 25 degrees Celsius 725.55 398.34 1052.77
7d_15C Seven days - 15 degrees Celsius 171.39 104.74 238.03
7d_30C Seven days - 30 degrees Celsius 590.79 331.62 849.96

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.008469 yes
3d_25C 7d_25C 0.002297 yes
3d_25C 7d_15C 0.065316 no
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.649346 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.215023 no
5d_25C 10d_25C 0.022165 yes
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.541421 no
7d_25C 10d_25C 0.120223 no
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.476807 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2528.t1
MSSISRSLNLLARTSRSSLLRPTTVNPVHHVFSNKVTGRGLATAFERNKPHVNIGTIGHVDHGKTTLTAAITKHQ
ASKGLANFLDYASIDKAPEERKRGITISTAHIEFATEDRHYAHVDCPGHADYIKNMITGAANMDGAIVVVAASDG
QMPQTREHLLLARQVGVQKIVVFVNKVDAVEDPEMLELVELEMRELLSSYGFEGEETPIVFGSALCALENRRPEI
GTEQIEKLMHAVDTWIPTPERDMDKPFLMSVEEVFSIPGRGTVVSGRVERGLLKKDTEVEIVGATDSGNPIKTKV
TDIETFKKSCDESRAGDNSGLLLRGVRREDIRRGMVVAAPNSTKANNKFLVSMYVLTEAEGGRRTGFGANYRPQV
YIRTADEAGDLSFPDGDMARRVQPGDNVEMILKTHHPVAAEPGQRFNIREGGRTVATGLITRVVE*
Coding >Pro_DTO377G3_2|g2528.t1
ATGTCGAGCATCTCTCGTTCATTGAACCTCCTGGCGCGCACTAGCCGGTCCTCCCTGCTGCGTCCGACTACCGTC
AACCCCGTCCACCATGTCTTCAGCAACAAGGTGACCGGCCGTGGGTTGGCCACTGCTTTCGAGCGTAACAAGCCC
CACGTTAACATTGGTACTATTGGCCACGTCGATCACGGCAAGACCACCCTGACTGCCGCTATCACCAAGCACCAG
GCCTCTAAGGGTCTTGCCAACTTCCTCGACTATGCCTCCATTGACAAGGCCCCTGAGGAGCGCAAGCGTGGTATT
ACCATCTCGACTGCCCACATTGAATTTGCGACTGAGGACCGTCACTACGCCCATGTCGACTGCCCCGGTCACGCC
GATTATATTAAGAACATGATTACCGGTGCTGCCAACATGGATGGTGCCATTGTCGTCGTTGCTGCGTCCGATGGT
CAGATGCCCCAGACCCGTGAGCACTTGCTGCTTGCCCGCCAGGTTGGTGTTCAGAAGATTGTTGTGTTCGTTAAC
AAGGTCGACGCTGTCGAGGACCCTGAGATGCTTGAGCTCGTCGAGCTCGAGATGCGTGAGCTCCTCTCCTCTTAC
GGATTCGAGGGTGAGGAGACTCCTATCGTCTTCGGCTCTGCCCTCTGCGCTCTGGAGAATCGCCGCCCCGAAATT
GGTACTGAGCAGATTGAGAAGCTCATGCATGCCGTCGACACCTGGATCCCTACCCCCGAGCGTGATATGGATAAG
CCTTTCCTTATGTCCGTTGAGGAAGTCTTCTCTATTCCTGGCCGTGGTACTGTTGTCTCTGGCCGTGTCGAACGT
GGTCTCCTGAAGAAGGATACTGAGGTTGAAATCGTCGGTGCAACCGACTCCGGCAACCCCATCAAGACCAAGGTT
ACGGATATTGAGACCTTCAAAAAGTCCTGTGACGAGTCCCGTGCTGGTGACAACTCCGGTCTCCTGCTCCGTGGT
GTCCGTCGTGAGGACATCCGCCGCGGCATGGTCGTTGCTGCCCCTAACAGCACCAAGGCTAACAACAAGTTCCTC
GTGTCCATGTACGTTCTGACCGAGGCCGAGGGTGGTCGCCGTACTGGTTTCGGTGCCAACTACCGGCCCCAGGTC
TACATCCGTACTGCTGATGAGGCTGGTGATCTCAGCTTCCCTGATGGCGACATGGCCAGACGTGTCCAACCCGGT
GACAACGTCGAGATGATCCTCAAGACCCACCACCCTGTTGCTGCGGAGCCCGGTCAGCGTTTCAACATCCGCGAG
GGAGGCCGCACCGTTGCCACTGGTCTGATCACCCGTGTCGTCGAGTAA
Transcript >Pro_DTO377G3_2|g2528.t1
ATGTCGAGCATCTCTCGTTCATTGAACCTCCTGGCGCGCACTAGCCGGTCCTCCCTGCTGCGTCCGACTACCGTC
AACCCCGTCCACCATGTCTTCAGCAACAAGGTGACCGGCCGTGGGTTGGCCACTGCTTTCGAGCGTAACAAGCCC
CACGTTAACATTGGTACTATTGGCCACGTCGATCACGGCAAGACCACCCTGACTGCCGCTATCACCAAGCACCAG
GCCTCTAAGGGTCTTGCCAACTTCCTCGACTATGCCTCCATTGACAAGGCCCCTGAGGAGCGCAAGCGTGGTATT
ACCATCTCGACTGCCCACATTGAATTTGCGACTGAGGACCGTCACTACGCCCATGTCGACTGCCCCGGTCACGCC
GATTATATTAAGAACATGATTACCGGTGCTGCCAACATGGATGGTGCCATTGTCGTCGTTGCTGCGTCCGATGGT
CAGATGCCCCAGACCCGTGAGCACTTGCTGCTTGCCCGCCAGGTTGGTGTTCAGAAGATTGTTGTGTTCGTTAAC
AAGGTCGACGCTGTCGAGGACCCTGAGATGCTTGAGCTCGTCGAGCTCGAGATGCGTGAGCTCCTCTCCTCTTAC
GGATTCGAGGGTGAGGAGACTCCTATCGTCTTCGGCTCTGCCCTCTGCGCTCTGGAGAATCGCCGCCCCGAAATT
GGTACTGAGCAGATTGAGAAGCTCATGCATGCCGTCGACACCTGGATCCCTACCCCCGAGCGTGATATGGATAAG
CCTTTCCTTATGTCCGTTGAGGAAGTCTTCTCTATTCCTGGCCGTGGTACTGTTGTCTCTGGCCGTGTCGAACGT
GGTCTCCTGAAGAAGGATACTGAGGTTGAAATCGTCGGTGCAACCGACTCCGGCAACCCCATCAAGACCAAGGTT
ACGGATATTGAGACCTTCAAAAAGTCCTGTGACGAGTCCCGTGCTGGTGACAACTCCGGTCTCCTGCTCCGTGGT
GTCCGTCGTGAGGACATCCGCCGCGGCATGGTCGTTGCTGCCCCTAACAGCACCAAGGCTAACAACAAGTTCCTC
GTGTCCATGTACGTTCTGACCGAGGCCGAGGGTGGTCGCCGTACTGGTTTCGGTGCCAACTACCGGCCCCAGGTC
TACATCCGTACTGCTGATGAGGCTGGTGATCTCAGCTTCCCTGATGGCGACATGGCCAGACGTGTCCAACCCGGT
GACAACGTCGAGATGATCCTCAAGACCCACCACCCTGTTGCTGCGGAGCCCGGTCAGCGTTTCAACATCCGCGAG
GGAGGCCGCACCGTTGCCACTGGTCTGATCACCCGTGTCGTCGAGTAA
Gene >Pro_DTO377G3_2|g2528.t1
ATGTCGAGCATCTCTCGTTCATTGAACCTCCTGGCGCGCACTAGCCGGTCCTCCCTGCTGCGTCCGACTACCGTC
AACCCCGTCCACCATGTCTTCAGCAACAAGGTGACCGGCCGTGGGTTGGCCACTGCTTTCGAGCGTAACAAGCCC
CACGTTAACATTGGTATGATCCTGTCGTTGGCGCATAATCCATCTCCACGCTAAAAGGTTGTTGCTTAGGTACTA
TTGGCCACGTCGATCACGGCAAGGTAAGCTATTCGCAACTTGTTCCGACATTTCCGCCATCTTCGAACATGAGAT
TTAACCCGTCCGCCCATAGACCACCCTGACTGCCGCTATCACCAAGCACCAGGCCTCTAAGGGTCTTGCCAACTT
CCTCGACTATGCCTCCATTGACAAGGCCCCTGAGGAGCGCAAGCGTGGTATTACCATCTCGACTGCCCACATTGA
ATTTGCGACTGAGGACCGTCACTACGCCCATGTCGACTGCCCCGGTCACGCCGATTATATTAAGAACATGATTAC
CGGTGCTGCCAACATGGATGGTGCCATTGTCGTCGTTGCTGCGTCCGATGGTCAGATGTACGTCCCCCGGTCTAA
AAACCTAGTTTGATGAGTGTGCTGACGCAAATCACGCATTAGGCCCCAGACCCGTGAGCACTTGCTGCTTGCCCG
CCAGGTTGGTGTTCAGAAGATTGTTGTGTTCGTTAACAAGGTCGACGCTGTCGAGGACCCTGAGATGCTTGAGCT
CGTCGAGCTCGAGATGCGTGAGCTCCTCTCCTCTTACGGATTCGAGGGTGAGGAGACTCCTATCGTCTTCGGCTC
TGCCCTCTGCGCTCTGGAGAATCGCCGCCCCGAAATTGGTACTGAGCAGATTGAGAAGCTCATGCATGCCGTCGA
CACCTGGATCCCTACCCCCGAGCGTGATATGGATAAGCCTTTCCTTATGTCCGTTGAGGAAGTCTTCTCTATTCC
TGGCCGTGGTACTGTTGTCTCTGGCCGTGTCGAACGTGGTCTCCTGAAGAAGGATACTGAGGTTGAAATCGTCGG
TGCAACCGACTCCGGCAACCCCATCAAGACCAAGGTTACGGATATTGAGACCTTCAAAAAGTCCTGTGACGAGTC
CCGTGCTGGTGACAACTCCGGTCTCCTGCTCCGTGGTGTCCGTCGTGAGGACATCCGCCGCGGCATGGTCGTTGC
TGCCCCTAACAGCACCAAGGCTAACAACAAGTTCCTCGTGTCCATGTACGTTCTGACCGAGGCCGAGGGTGGTCG
CCGTACTGGTTTCGGTGCCAACTACCGGCCCCAGGTCTACATCCGTACTGCTGGTAAGTTCAATTTCCACTGATA
TGATATCAAATCGATAAGGGATGCTAACTATGCTCTAGATGAGGCTGGTGATCTCAGCTTCCCTGATGGCGACAT
GGCCAGACGTGTCCAACCCGGTGACAACGTCGAGATGATCCTCAAGACCCACCACCCTGTTGCTGCGGAGCCCGG
TCAGCGTTTCAACATCCGCGAGGGAGGCCGCACCGTTGCCACTGGTCTGATCACCCGTGTCGTCGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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