Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2528.t1
Gene name
Locationscaffold_03:257048..258618
Strand-
Gene length (bp)1570
Transcript length (bp)1323
Coding sequence length (bp)1323
Protein length (aa) 441

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00009 GTP_EFTU Elongation factor Tu GTP binding domain 2.6E-55 49 242
PF03143 GTP_EFTU_D3 Elongation factor Tu C-terminal domain 1.2E-25 343 438
PF03144 GTP_EFTU_D2 Elongation factor Tu domain 2 1.9E-17 266 337
PF01926 MMR_HSR1 50S ribosome-binding GTPase 2.0E-05 54 173

GO

GO Term Description Terminal node
GO:0005525 GTP binding Yes
GO:0003924 GTPase activity Yes
GO:0036094 small molecule binding No
GO:0003824 catalytic activity No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0043167 ion binding No
GO:0017076 purine nucleotide binding No
GO:0097367 carbohydrate derivative binding No
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides No
GO:0016462 pyrophosphatase activity No
GO:0000166 nucleotide binding No
GO:0005488 binding No
GO:0017111 nucleoside-triphosphatase activity No
GO:0003674 molecular_function No
GO:0032561 guanyl ribonucleotide binding No
GO:0019001 guanyl nucleotide binding No
GO:0097159 organic cyclic compound binding No
GO:0032553 ribonucleotide binding No
GO:0032555 purine ribonucleotide binding No
GO:0016787 hydrolase activity No
GO:1901363 heterocyclic compound binding No
GO:0043168 anion binding No
GO:0016817 hydrolase activity, acting on acid anhydrides No
GO:1901265 nucleoside phosphate binding No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 254.18 153.06 355.30
5d_25C Five days - 25 degrees Celsius 432.43 249.58 615.28
7d_25C Seven days - 25 degrees Celsius 494.94 282.46 707.42
10d_25C Ten days - 25 degrees Celsius 725.55 398.34 1052.77
7d_15C Seven days - 15 degrees Celsius 171.39 104.74 238.03
7d_30C Seven days - 30 degrees Celsius 590.79 331.62 849.96

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.008469 yes
3d_25C 7d_25C 0.002297 yes
3d_25C 7d_15C 0.065316 no
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.649346 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.215023 no
5d_25C 10d_25C 0.022165 yes
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.541421 no
7d_25C 10d_25C 0.120223 no
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.476807 no

Orthologs

Orthofinder run ID2
Orthogroup3640
Change Orthofinder run
Species Protein ID
Penicillium roqueforti DTO002I6 Pro_DTO002I6_2|g4128.t1
Penicillium roqueforti DTO003C3 Pro_DTO003C3_2|g8084.t1
Penicillium roqueforti DTO003H1 (CBS 147308) Pro_DTO003H1_2|g8179.t1
Penicillium roqueforti DTO006G1 Pro_DTO006G1_2|g4002.t1
Penicillium roqueforti DTO006G7 Pro_DTO006G7_3|g5040.t1
Penicillium roqueforti DTO012A1 Pro_DTO012A1_2|g1009.t1
Penicillium roqueforti DTO012A2 (CBS 147309) Pro_DTO012A2_2|g5699.t1
Penicillium roqueforti DTO012A6 (CBS 147310) Pro_DTO012A6_2|g3242.t1
Penicillium roqueforti DTO012A7 Pro_DTO012A7_2|g2579.t1
Penicillium roqueforti DTO012A8 Pro_DTO012A8_2|g5109.t1
Penicillium roqueforti DTO012A9 Pro_DTO012A9_2|g2168.t1
Penicillium roqueforti DTO013E5 Pro_DTO013E5_2|g750.t1
Penicillium roqueforti DTO013F2 Pro_DTO013F2_2|g616.t1
Penicillium roqueforti DTO013F5 (CBS 147311) Pro_DTO013F5_2|g3477.t1
Penicillium roqueforti DTO027I6 Pro_DTO027I6_2|g1754.t1
Penicillium roqueforti DTO032C6 Pro_DTO032C6_2|g5220.t1
Penicillium roqueforti DTO039G3 Pro_DTO039G3_2|g1172.t1
Penicillium roqueforti DTO046C5 Pro_DTO046C5_2|g2191.t1
Penicillium roqueforti DTO070G2 (CBS 147317) Pro_DTO070G2_2|g2596.t1
Penicillium roqueforti DTO081F9 (CBS 147318) Pro_DTO081F9_2|g3862.t1
Penicillium roqueforti DTO101D6 (CBS 147325) Pro_DTO101D6_2|g8020.t1
Penicillium roqueforti DTO102I9 (CBS 147326) Pro_DTO102I9_2|g2237.t1
Penicillium roqueforti DTO126G2 (CBS 147330) Pro_DTO126G2_2|g790.t1
Penicillium roqueforti DTO127F7 (CBS 147331) Pro_DTO127F7_2|g130.t1
Penicillium roqueforti DTO127F9 (CBS 147332) Pro_DTO127F9_2|g7740.t1
Penicillium roqueforti DTO130C1 (CBS 147333) Pro_DTO130C1_2|g2598.t1
Penicillium roqueforti DTO163C3 (CBS 147337) Pro_DTO163C3_2|g1319.t1
Penicillium roqueforti DTO163F5 (CBS 147338) Pro_DTO163F5_2|g6714.t1
Penicillium roqueforti DTO163G4 (CBS 147339) Pro_DTO163G4_2|g5544.t1
Penicillium roqueforti DTO265D5 (CBS 147372) Pro_DTO265D5_2|g1947.t1
Penicillium roqueforti DTO369A1 (CBS 147354) Pro_DTO369A1_2|g3208.t1
Penicillium roqueforti DTO375B1 (CBS 147355) Pro_DTO375B1_2|g4590.t1
Penicillium roqueforti DTO377G2 (LCP 96.3914a) Pro_DTO377G2_2|g831.t1
Penicillium roqueforti LCP96 04111 Pro_DTO377G3_2|g2528.t1 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2528.t1
MSSISRSLNLLARTSRSSLLRPTTVNPVHHVFSNKVTGRGLATAFERNKPHVNIGTIGHVDHGKTTLTAAITKHQ
ASKGLANFLDYASIDKAPEERKRGITISTAHIEFATEDRHYAHVDCPGHADYIKNMITGAANMDGAIVVVAASDG
QMPQTREHLLLARQVGVQKIVVFVNKVDAVEDPEMLELVELEMRELLSSYGFEGEETPIVFGSALCALENRRPEI
GTEQIEKLMHAVDTWIPTPERDMDKPFLMSVEEVFSIPGRGTVVSGRVERGLLKKDTEVEIVGATDSGNPIKTKV
TDIETFKKSCDESRAGDNSGLLLRGVRREDIRRGMVVAAPNSTKANNKFLVSMYVLTEAEGGRRTGFGANYRPQV
YIRTADEAGDLSFPDGDMARRVQPGDNVEMILKTHHPVAAEPGQRFNIREGGRTVATGLITRVVE*
Coding >Pro_DTO377G3_2|g2528.t1
ATGTCGAGCATCTCTCGTTCATTGAACCTCCTGGCGCGCACTAGCCGGTCCTCCCTGCTGCGTCCGACTACCGTC
AACCCCGTCCACCATGTCTTCAGCAACAAGGTGACCGGCCGTGGGTTGGCCACTGCTTTCGAGCGTAACAAGCCC
CACGTTAACATTGGTACTATTGGCCACGTCGATCACGGCAAGACCACCCTGACTGCCGCTATCACCAAGCACCAG
GCCTCTAAGGGTCTTGCCAACTTCCTCGACTATGCCTCCATTGACAAGGCCCCTGAGGAGCGCAAGCGTGGTATT
ACCATCTCGACTGCCCACATTGAATTTGCGACTGAGGACCGTCACTACGCCCATGTCGACTGCCCCGGTCACGCC
GATTATATTAAGAACATGATTACCGGTGCTGCCAACATGGATGGTGCCATTGTCGTCGTTGCTGCGTCCGATGGT
CAGATGCCCCAGACCCGTGAGCACTTGCTGCTTGCCCGCCAGGTTGGTGTTCAGAAGATTGTTGTGTTCGTTAAC
AAGGTCGACGCTGTCGAGGACCCTGAGATGCTTGAGCTCGTCGAGCTCGAGATGCGTGAGCTCCTCTCCTCTTAC
GGATTCGAGGGTGAGGAGACTCCTATCGTCTTCGGCTCTGCCCTCTGCGCTCTGGAGAATCGCCGCCCCGAAATT
GGTACTGAGCAGATTGAGAAGCTCATGCATGCCGTCGACACCTGGATCCCTACCCCCGAGCGTGATATGGATAAG
CCTTTCCTTATGTCCGTTGAGGAAGTCTTCTCTATTCCTGGCCGTGGTACTGTTGTCTCTGGCCGTGTCGAACGT
GGTCTCCTGAAGAAGGATACTGAGGTTGAAATCGTCGGTGCAACCGACTCCGGCAACCCCATCAAGACCAAGGTT
ACGGATATTGAGACCTTCAAAAAGTCCTGTGACGAGTCCCGTGCTGGTGACAACTCCGGTCTCCTGCTCCGTGGT
GTCCGTCGTGAGGACATCCGCCGCGGCATGGTCGTTGCTGCCCCTAACAGCACCAAGGCTAACAACAAGTTCCTC
GTGTCCATGTACGTTCTGACCGAGGCCGAGGGTGGTCGCCGTACTGGTTTCGGTGCCAACTACCGGCCCCAGGTC
TACATCCGTACTGCTGATGAGGCTGGTGATCTCAGCTTCCCTGATGGCGACATGGCCAGACGTGTCCAACCCGGT
GACAACGTCGAGATGATCCTCAAGACCCACCACCCTGTTGCTGCGGAGCCCGGTCAGCGTTTCAACATCCGCGAG
GGAGGCCGCACCGTTGCCACTGGTCTGATCACCCGTGTCGTCGAGTAA
Transcript >Pro_DTO377G3_2|g2528.t1
ATGTCGAGCATCTCTCGTTCATTGAACCTCCTGGCGCGCACTAGCCGGTCCTCCCTGCTGCGTCCGACTACCGTC
AACCCCGTCCACCATGTCTTCAGCAACAAGGTGACCGGCCGTGGGTTGGCCACTGCTTTCGAGCGTAACAAGCCC
CACGTTAACATTGGTACTATTGGCCACGTCGATCACGGCAAGACCACCCTGACTGCCGCTATCACCAAGCACCAG
GCCTCTAAGGGTCTTGCCAACTTCCTCGACTATGCCTCCATTGACAAGGCCCCTGAGGAGCGCAAGCGTGGTATT
ACCATCTCGACTGCCCACATTGAATTTGCGACTGAGGACCGTCACTACGCCCATGTCGACTGCCCCGGTCACGCC
GATTATATTAAGAACATGATTACCGGTGCTGCCAACATGGATGGTGCCATTGTCGTCGTTGCTGCGTCCGATGGT
CAGATGCCCCAGACCCGTGAGCACTTGCTGCTTGCCCGCCAGGTTGGTGTTCAGAAGATTGTTGTGTTCGTTAAC
AAGGTCGACGCTGTCGAGGACCCTGAGATGCTTGAGCTCGTCGAGCTCGAGATGCGTGAGCTCCTCTCCTCTTAC
GGATTCGAGGGTGAGGAGACTCCTATCGTCTTCGGCTCTGCCCTCTGCGCTCTGGAGAATCGCCGCCCCGAAATT
GGTACTGAGCAGATTGAGAAGCTCATGCATGCCGTCGACACCTGGATCCCTACCCCCGAGCGTGATATGGATAAG
CCTTTCCTTATGTCCGTTGAGGAAGTCTTCTCTATTCCTGGCCGTGGTACTGTTGTCTCTGGCCGTGTCGAACGT
GGTCTCCTGAAGAAGGATACTGAGGTTGAAATCGTCGGTGCAACCGACTCCGGCAACCCCATCAAGACCAAGGTT
ACGGATATTGAGACCTTCAAAAAGTCCTGTGACGAGTCCCGTGCTGGTGACAACTCCGGTCTCCTGCTCCGTGGT
GTCCGTCGTGAGGACATCCGCCGCGGCATGGTCGTTGCTGCCCCTAACAGCACCAAGGCTAACAACAAGTTCCTC
GTGTCCATGTACGTTCTGACCGAGGCCGAGGGTGGTCGCCGTACTGGTTTCGGTGCCAACTACCGGCCCCAGGTC
TACATCCGTACTGCTGATGAGGCTGGTGATCTCAGCTTCCCTGATGGCGACATGGCCAGACGTGTCCAACCCGGT
GACAACGTCGAGATGATCCTCAAGACCCACCACCCTGTTGCTGCGGAGCCCGGTCAGCGTTTCAACATCCGCGAG
GGAGGCCGCACCGTTGCCACTGGTCTGATCACCCGTGTCGTCGAGTAA
Gene >Pro_DTO377G3_2|g2528.t1
ATGTCGAGCATCTCTCGTTCATTGAACCTCCTGGCGCGCACTAGCCGGTCCTCCCTGCTGCGTCCGACTACCGTC
AACCCCGTCCACCATGTCTTCAGCAACAAGGTGACCGGCCGTGGGTTGGCCACTGCTTTCGAGCGTAACAAGCCC
CACGTTAACATTGGTATGATCCTGTCGTTGGCGCATAATCCATCTCCACGCTAAAAGGTTGTTGCTTAGGTACTA
TTGGCCACGTCGATCACGGCAAGGTAAGCTATTCGCAACTTGTTCCGACATTTCCGCCATCTTCGAACATGAGAT
TTAACCCGTCCGCCCATAGACCACCCTGACTGCCGCTATCACCAAGCACCAGGCCTCTAAGGGTCTTGCCAACTT
CCTCGACTATGCCTCCATTGACAAGGCCCCTGAGGAGCGCAAGCGTGGTATTACCATCTCGACTGCCCACATTGA
ATTTGCGACTGAGGACCGTCACTACGCCCATGTCGACTGCCCCGGTCACGCCGATTATATTAAGAACATGATTAC
CGGTGCTGCCAACATGGATGGTGCCATTGTCGTCGTTGCTGCGTCCGATGGTCAGATGTACGTCCCCCGGTCTAA
AAACCTAGTTTGATGAGTGTGCTGACGCAAATCACGCATTAGGCCCCAGACCCGTGAGCACTTGCTGCTTGCCCG
CCAGGTTGGTGTTCAGAAGATTGTTGTGTTCGTTAACAAGGTCGACGCTGTCGAGGACCCTGAGATGCTTGAGCT
CGTCGAGCTCGAGATGCGTGAGCTCCTCTCCTCTTACGGATTCGAGGGTGAGGAGACTCCTATCGTCTTCGGCTC
TGCCCTCTGCGCTCTGGAGAATCGCCGCCCCGAAATTGGTACTGAGCAGATTGAGAAGCTCATGCATGCCGTCGA
CACCTGGATCCCTACCCCCGAGCGTGATATGGATAAGCCTTTCCTTATGTCCGTTGAGGAAGTCTTCTCTATTCC
TGGCCGTGGTACTGTTGTCTCTGGCCGTGTCGAACGTGGTCTCCTGAAGAAGGATACTGAGGTTGAAATCGTCGG
TGCAACCGACTCCGGCAACCCCATCAAGACCAAGGTTACGGATATTGAGACCTTCAAAAAGTCCTGTGACGAGTC
CCGTGCTGGTGACAACTCCGGTCTCCTGCTCCGTGGTGTCCGTCGTGAGGACATCCGCCGCGGCATGGTCGTTGC
TGCCCCTAACAGCACCAAGGCTAACAACAAGTTCCTCGTGTCCATGTACGTTCTGACCGAGGCCGAGGGTGGTCG
CCGTACTGGTTTCGGTGCCAACTACCGGCCCCAGGTCTACATCCGTACTGCTGGTAAGTTCAATTTCCACTGATA
TGATATCAAATCGATAAGGGATGCTAACTATGCTCTAGATGAGGCTGGTGATCTCAGCTTCCCTGATGGCGACAT
GGCCAGACGTGTCCAACCCGGTGACAACGTCGAGATGATCCTCAAGACCCACCACCCTGTTGCTGCGGAGCCCGG
TCAGCGTTTCAACATCCGCGAGGGAGGCCGCACCGTTGCCACTGGTCTGATCACCCGTGTCGTCGAGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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