© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2528.t1 |
| Gene name | |
| Location | scaffold_03:257048..258618 |
| Strand | - |
| Gene length (bp) | 1570 |
| Transcript length (bp) | 1323 |
| Coding sequence length (bp) | 1323 |
| Protein length (aa) | 441 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00009 | GTP_EFTU | Elongation factor Tu GTP binding domain | 2.6E-55 | 49 | 242 |
| PF03143 | GTP_EFTU_D3 | Elongation factor Tu C-terminal domain | 1.2E-25 | 343 | 438 |
| PF03144 | GTP_EFTU_D2 | Elongation factor Tu domain 2 | 1.9E-17 | 266 | 337 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 2.0E-05 | 54 | 173 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0003924 | GTPase activity | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043167 | ion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 254.18 | 153.06 | 355.30 |
| 5d_25C | Five days - 25 degrees Celsius | 432.43 | 249.58 | 615.28 |
| 7d_25C | Seven days - 25 degrees Celsius | 494.94 | 282.46 | 707.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 725.55 | 398.34 | 1052.77 |
| 7d_15C | Seven days - 15 degrees Celsius | 171.39 | 104.74 | 238.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 590.79 | 331.62 | 849.96 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.008469 | yes |
| 3d_25C | 7d_25C | 0.002297 | yes |
| 3d_25C | 7d_15C | 0.065316 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.649346 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.215023 | no |
| 5d_25C | 10d_25C | 0.022165 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.541421 | no |
| 7d_25C | 10d_25C | 0.120223 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.476807 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2528.t1 MSSISRSLNLLARTSRSSLLRPTTVNPVHHVFSNKVTGRGLATAFERNKPHVNIGTIGHVDHGKTTLTAAITKHQ ASKGLANFLDYASIDKAPEERKRGITISTAHIEFATEDRHYAHVDCPGHADYIKNMITGAANMDGAIVVVAASDG QMPQTREHLLLARQVGVQKIVVFVNKVDAVEDPEMLELVELEMRELLSSYGFEGEETPIVFGSALCALENRRPEI GTEQIEKLMHAVDTWIPTPERDMDKPFLMSVEEVFSIPGRGTVVSGRVERGLLKKDTEVEIVGATDSGNPIKTKV TDIETFKKSCDESRAGDNSGLLLRGVRREDIRRGMVVAAPNSTKANNKFLVSMYVLTEAEGGRRTGFGANYRPQV YIRTADEAGDLSFPDGDMARRVQPGDNVEMILKTHHPVAAEPGQRFNIREGGRTVATGLITRVVE* |
| Coding | >Pro_DTO377G3_2|g2528.t1 ATGTCGAGCATCTCTCGTTCATTGAACCTCCTGGCGCGCACTAGCCGGTCCTCCCTGCTGCGTCCGACTACCGTC AACCCCGTCCACCATGTCTTCAGCAACAAGGTGACCGGCCGTGGGTTGGCCACTGCTTTCGAGCGTAACAAGCCC CACGTTAACATTGGTACTATTGGCCACGTCGATCACGGCAAGACCACCCTGACTGCCGCTATCACCAAGCACCAG GCCTCTAAGGGTCTTGCCAACTTCCTCGACTATGCCTCCATTGACAAGGCCCCTGAGGAGCGCAAGCGTGGTATT ACCATCTCGACTGCCCACATTGAATTTGCGACTGAGGACCGTCACTACGCCCATGTCGACTGCCCCGGTCACGCC GATTATATTAAGAACATGATTACCGGTGCTGCCAACATGGATGGTGCCATTGTCGTCGTTGCTGCGTCCGATGGT CAGATGCCCCAGACCCGTGAGCACTTGCTGCTTGCCCGCCAGGTTGGTGTTCAGAAGATTGTTGTGTTCGTTAAC AAGGTCGACGCTGTCGAGGACCCTGAGATGCTTGAGCTCGTCGAGCTCGAGATGCGTGAGCTCCTCTCCTCTTAC GGATTCGAGGGTGAGGAGACTCCTATCGTCTTCGGCTCTGCCCTCTGCGCTCTGGAGAATCGCCGCCCCGAAATT GGTACTGAGCAGATTGAGAAGCTCATGCATGCCGTCGACACCTGGATCCCTACCCCCGAGCGTGATATGGATAAG CCTTTCCTTATGTCCGTTGAGGAAGTCTTCTCTATTCCTGGCCGTGGTACTGTTGTCTCTGGCCGTGTCGAACGT GGTCTCCTGAAGAAGGATACTGAGGTTGAAATCGTCGGTGCAACCGACTCCGGCAACCCCATCAAGACCAAGGTT ACGGATATTGAGACCTTCAAAAAGTCCTGTGACGAGTCCCGTGCTGGTGACAACTCCGGTCTCCTGCTCCGTGGT GTCCGTCGTGAGGACATCCGCCGCGGCATGGTCGTTGCTGCCCCTAACAGCACCAAGGCTAACAACAAGTTCCTC GTGTCCATGTACGTTCTGACCGAGGCCGAGGGTGGTCGCCGTACTGGTTTCGGTGCCAACTACCGGCCCCAGGTC TACATCCGTACTGCTGATGAGGCTGGTGATCTCAGCTTCCCTGATGGCGACATGGCCAGACGTGTCCAACCCGGT GACAACGTCGAGATGATCCTCAAGACCCACCACCCTGTTGCTGCGGAGCCCGGTCAGCGTTTCAACATCCGCGAG GGAGGCCGCACCGTTGCCACTGGTCTGATCACCCGTGTCGTCGAGTAA |
| Transcript | >Pro_DTO377G3_2|g2528.t1 ATGTCGAGCATCTCTCGTTCATTGAACCTCCTGGCGCGCACTAGCCGGTCCTCCCTGCTGCGTCCGACTACCGTC AACCCCGTCCACCATGTCTTCAGCAACAAGGTGACCGGCCGTGGGTTGGCCACTGCTTTCGAGCGTAACAAGCCC CACGTTAACATTGGTACTATTGGCCACGTCGATCACGGCAAGACCACCCTGACTGCCGCTATCACCAAGCACCAG GCCTCTAAGGGTCTTGCCAACTTCCTCGACTATGCCTCCATTGACAAGGCCCCTGAGGAGCGCAAGCGTGGTATT ACCATCTCGACTGCCCACATTGAATTTGCGACTGAGGACCGTCACTACGCCCATGTCGACTGCCCCGGTCACGCC GATTATATTAAGAACATGATTACCGGTGCTGCCAACATGGATGGTGCCATTGTCGTCGTTGCTGCGTCCGATGGT CAGATGCCCCAGACCCGTGAGCACTTGCTGCTTGCCCGCCAGGTTGGTGTTCAGAAGATTGTTGTGTTCGTTAAC AAGGTCGACGCTGTCGAGGACCCTGAGATGCTTGAGCTCGTCGAGCTCGAGATGCGTGAGCTCCTCTCCTCTTAC GGATTCGAGGGTGAGGAGACTCCTATCGTCTTCGGCTCTGCCCTCTGCGCTCTGGAGAATCGCCGCCCCGAAATT GGTACTGAGCAGATTGAGAAGCTCATGCATGCCGTCGACACCTGGATCCCTACCCCCGAGCGTGATATGGATAAG CCTTTCCTTATGTCCGTTGAGGAAGTCTTCTCTATTCCTGGCCGTGGTACTGTTGTCTCTGGCCGTGTCGAACGT GGTCTCCTGAAGAAGGATACTGAGGTTGAAATCGTCGGTGCAACCGACTCCGGCAACCCCATCAAGACCAAGGTT ACGGATATTGAGACCTTCAAAAAGTCCTGTGACGAGTCCCGTGCTGGTGACAACTCCGGTCTCCTGCTCCGTGGT GTCCGTCGTGAGGACATCCGCCGCGGCATGGTCGTTGCTGCCCCTAACAGCACCAAGGCTAACAACAAGTTCCTC GTGTCCATGTACGTTCTGACCGAGGCCGAGGGTGGTCGCCGTACTGGTTTCGGTGCCAACTACCGGCCCCAGGTC TACATCCGTACTGCTGATGAGGCTGGTGATCTCAGCTTCCCTGATGGCGACATGGCCAGACGTGTCCAACCCGGT GACAACGTCGAGATGATCCTCAAGACCCACCACCCTGTTGCTGCGGAGCCCGGTCAGCGTTTCAACATCCGCGAG GGAGGCCGCACCGTTGCCACTGGTCTGATCACCCGTGTCGTCGAGTAA |
| Gene | >Pro_DTO377G3_2|g2528.t1 ATGTCGAGCATCTCTCGTTCATTGAACCTCCTGGCGCGCACTAGCCGGTCCTCCCTGCTGCGTCCGACTACCGTC AACCCCGTCCACCATGTCTTCAGCAACAAGGTGACCGGCCGTGGGTTGGCCACTGCTTTCGAGCGTAACAAGCCC CACGTTAACATTGGTATGATCCTGTCGTTGGCGCATAATCCATCTCCACGCTAAAAGGTTGTTGCTTAGGTACTA TTGGCCACGTCGATCACGGCAAGGTAAGCTATTCGCAACTTGTTCCGACATTTCCGCCATCTTCGAACATGAGAT TTAACCCGTCCGCCCATAGACCACCCTGACTGCCGCTATCACCAAGCACCAGGCCTCTAAGGGTCTTGCCAACTT CCTCGACTATGCCTCCATTGACAAGGCCCCTGAGGAGCGCAAGCGTGGTATTACCATCTCGACTGCCCACATTGA ATTTGCGACTGAGGACCGTCACTACGCCCATGTCGACTGCCCCGGTCACGCCGATTATATTAAGAACATGATTAC CGGTGCTGCCAACATGGATGGTGCCATTGTCGTCGTTGCTGCGTCCGATGGTCAGATGTACGTCCCCCGGTCTAA AAACCTAGTTTGATGAGTGTGCTGACGCAAATCACGCATTAGGCCCCAGACCCGTGAGCACTTGCTGCTTGCCCG CCAGGTTGGTGTTCAGAAGATTGTTGTGTTCGTTAACAAGGTCGACGCTGTCGAGGACCCTGAGATGCTTGAGCT CGTCGAGCTCGAGATGCGTGAGCTCCTCTCCTCTTACGGATTCGAGGGTGAGGAGACTCCTATCGTCTTCGGCTC TGCCCTCTGCGCTCTGGAGAATCGCCGCCCCGAAATTGGTACTGAGCAGATTGAGAAGCTCATGCATGCCGTCGA CACCTGGATCCCTACCCCCGAGCGTGATATGGATAAGCCTTTCCTTATGTCCGTTGAGGAAGTCTTCTCTATTCC TGGCCGTGGTACTGTTGTCTCTGGCCGTGTCGAACGTGGTCTCCTGAAGAAGGATACTGAGGTTGAAATCGTCGG TGCAACCGACTCCGGCAACCCCATCAAGACCAAGGTTACGGATATTGAGACCTTCAAAAAGTCCTGTGACGAGTC CCGTGCTGGTGACAACTCCGGTCTCCTGCTCCGTGGTGTCCGTCGTGAGGACATCCGCCGCGGCATGGTCGTTGC TGCCCCTAACAGCACCAAGGCTAACAACAAGTTCCTCGTGTCCATGTACGTTCTGACCGAGGCCGAGGGTGGTCG CCGTACTGGTTTCGGTGCCAACTACCGGCCCCAGGTCTACATCCGTACTGCTGGTAAGTTCAATTTCCACTGATA TGATATCAAATCGATAAGGGATGCTAACTATGCTCTAGATGAGGCTGGTGATCTCAGCTTCCCTGATGGCGACAT GGCCAGACGTGTCCAACCCGGTGACAACGTCGAGATGATCCTCAAGACCCACCACCCTGTTGCTGCGGAGCCCGG TCAGCGTTTCAACATCCGCGAGGGAGGCCGCACCGTTGCCACTGGTCTGATCACCCGTGTCGTCGAGTAA |