© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2508.t1 |
| Gene name | |
| Location | scaffold_03:211407..212849 |
| Strand | - |
| Gene length (bp) | 1442 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16717 | RAC_head | Ribosome-associated complex head domain | 2.6E-31 | 346 | 442 |
| PF00226 | DnaJ | DnaJ domain | 3.0E-16 | 101 | 169 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 93.40 | 57.13 | 129.67 |
| 5d_25C | Five days - 25 degrees Celsius | 48.74 | 28.33 | 69.15 |
| 7d_25C | Seven days - 25 degrees Celsius | 48.14 | 27.93 | 68.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 26.11 | 13.46 | 38.76 |
| 7d_15C | Seven days - 15 degrees Celsius | 51.64 | 30.32 | 72.96 |
| 7d_30C | Seven days - 30 degrees Celsius | 42.01 | 24.12 | 59.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.002297 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.973975 | no |
| 5d_25C | 7d_15C | 0.863124 | no |
| 5d_25C | 7d_30C | 0.609095 | no |
| 5d_25C | 10d_25C | 0.011062 | yes |
| 7d_25C | 7d_15C | 0.830975 | no |
| 7d_25C | 7d_30C | 0.646851 | no |
| 7d_25C | 10d_25C | 0.012904 | yes |
| 7d_15C | 7d_30C | 0.440026 | no |
| 7d_15C | 10d_25C | 0.005626 | yes |
| 7d_30C | 10d_25C | 0.061799 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2508.t1 MAAAQVVDITLPTLPQGWAGEKDFKIVGALSGATKRNVEPVGPHFLAHARRSRHNRTFSEDERLQAQNNVKKTET EEDDDISEDEDPVMLAREAKDWKGQDHYAVLGLKKYRWRATPEQIKRAHRKKVLRHHPDKKAAQGNSDENDSFFK CIQKATDLLLDPTRRRQFDSVDDNADVEPPTKKLTGSKFYKAWGPVFVAEGRFSNKQPVPTLGDENSTQEHVETF YNFWYNVDSWRTFEYLDEDVPDDGESRDQKRHVEKKNANARRKRKTEDTVRLRELVDECLASDERIKKFRQQARA GKDAKRLAKEEEMRRLKEEKEKAKAAEEQRKKDAEEAAKADREKNKKAKEAAKNASKKNKRILKGSVKDVNYFAA GEPTPADIDNVLSDVDLIMAKIDVDELAVLAEKLTIAGSDGAAVKTAWSGEAKRLVDAGKLKAGEAKVFV* |
| Coding | >Pro_DTO377G3_2|g2508.t1 ATGGCTGCTGCTCAAGTTGTTGACATTACCCTCCCTACCTTGCCTCAGGGCTGGGCTGGTGAGAAGGATTTCAAG ATTGTCGGTGCTCTGTCCGGTGCCACCAAGCGCAACGTGGAGCCCGTTGGCCCGCACTTCCTGGCTCACGCTCGC CGATCTCGTCACAACCGTACTTTCTCCGAGGATGAGCGCCTCCAGGCCCAGAACAATGTCAAAAAGACCGAGACT GAGGAGGATGATGATATCTCTGAAGATGAGGATCCTGTCATGCTTGCCCGTGAGGCCAAGGACTGGAAGGGCCAG GATCACTACGCCGTCTTGGGTTTGAAAAAGTACCGCTGGCGTGCAACCCCCGAGCAGATCAAGCGGGCTCACCGC AAGAAGGTCCTGCGTCACCACCCTGACAAGAAGGCCGCCCAGGGTAACAGCGATGAGAACGACAGCTTCTTCAAG TGTATCCAGAAGGCTACCGATCTGCTTCTCGACCCTACTCGTCGTCGCCAGTTCGATTCCGTCGACGACAACGCT GACGTTGAGCCCCCCACTAAGAAGCTCACCGGTAGCAAGTTCTACAAGGCCTGGGGCCCTGTTTTCGTTGCAGAG GGTCGCTTCTCCAATAAGCAGCCTGTGCCCACACTCGGAGACGAGAACAGCACTCAGGAGCATGTCGAGACTTTC TACAACTTCTGGTACAATGTTGACAGCTGGAGGACTTTCGAGTACCTTGATGAGGATGTGCCTGATGATGGAGAG AGTCGTGACCAGAAACGTCATGTGGAGAAGAAGAACGCCAATGCCCGCCGCAAGCGCAAGACCGAGGACACCGTT CGTCTGCGTGAGCTCGTTGACGAGTGTCTCGCTTCCGATGAGCGTATTAAGAAGTTCCGCCAGCAGGCTCGTGCC GGCAAAGACGCTAAGCGTCTCGCCAAGGAGGAGGAGATGCGTCGTCTCAAGGAGGAGAAGGAGAAAGCCAAGGCC GCCGAGGAGCAGCGCAAGAAGGACGCTGAGGAGGCCGCCAAGGCTGACCGTGAGAAGAATAAGAAGGCTAAAGAG GCCGCTAAGAACGCTTCCAAGAAGAACAAGCGTATCCTCAAGGGCTCCGTCAAGGATGTCAACTACTTCGCCGCC GGTGAGCCCACTCCCGCTGATATCGACAATGTCCTCAGCGATGTCGACCTCATCATGGCCAAGATCGATGTTGAT GAGCTTGCCGTTCTGGCTGAGAAGCTCACCATTGCCGGCAGTGATGGCGCTGCTGTCAAGACCGCTTGGTCTGGC GAGGCTAAGCGCCTTGTTGATGCTGGCAAGCTGAAGGCCGGCGAGGCCAAGGTCTTCGTTTAA |
| Transcript | >Pro_DTO377G3_2|g2508.t1 ATGGCTGCTGCTCAAGTTGTTGACATTACCCTCCCTACCTTGCCTCAGGGCTGGGCTGGTGAGAAGGATTTCAAG ATTGTCGGTGCTCTGTCCGGTGCCACCAAGCGCAACGTGGAGCCCGTTGGCCCGCACTTCCTGGCTCACGCTCGC CGATCTCGTCACAACCGTACTTTCTCCGAGGATGAGCGCCTCCAGGCCCAGAACAATGTCAAAAAGACCGAGACT GAGGAGGATGATGATATCTCTGAAGATGAGGATCCTGTCATGCTTGCCCGTGAGGCCAAGGACTGGAAGGGCCAG GATCACTACGCCGTCTTGGGTTTGAAAAAGTACCGCTGGCGTGCAACCCCCGAGCAGATCAAGCGGGCTCACCGC AAGAAGGTCCTGCGTCACCACCCTGACAAGAAGGCCGCCCAGGGTAACAGCGATGAGAACGACAGCTTCTTCAAG TGTATCCAGAAGGCTACCGATCTGCTTCTCGACCCTACTCGTCGTCGCCAGTTCGATTCCGTCGACGACAACGCT GACGTTGAGCCCCCCACTAAGAAGCTCACCGGTAGCAAGTTCTACAAGGCCTGGGGCCCTGTTTTCGTTGCAGAG GGTCGCTTCTCCAATAAGCAGCCTGTGCCCACACTCGGAGACGAGAACAGCACTCAGGAGCATGTCGAGACTTTC TACAACTTCTGGTACAATGTTGACAGCTGGAGGACTTTCGAGTACCTTGATGAGGATGTGCCTGATGATGGAGAG AGTCGTGACCAGAAACGTCATGTGGAGAAGAAGAACGCCAATGCCCGCCGCAAGCGCAAGACCGAGGACACCGTT CGTCTGCGTGAGCTCGTTGACGAGTGTCTCGCTTCCGATGAGCGTATTAAGAAGTTCCGCCAGCAGGCTCGTGCC GGCAAAGACGCTAAGCGTCTCGCCAAGGAGGAGGAGATGCGTCGTCTCAAGGAGGAGAAGGAGAAAGCCAAGGCC GCCGAGGAGCAGCGCAAGAAGGACGCTGAGGAGGCCGCCAAGGCTGACCGTGAGAAGAATAAGAAGGCTAAAGAG GCCGCTAAGAACGCTTCCAAGAAGAACAAGCGTATCCTCAAGGGCTCCGTCAAGGATGTCAACTACTTCGCCGCC GGTGAGCCCACTCCCGCTGATATCGACAATGTCCTCAGCGATGTCGACCTCATCATGGCCAAGATCGATGTTGAT GAGCTTGCCGTTCTGGCTGAGAAGCTCACCATTGCCGGCAGTGATGGCGCTGCTGTCAAGACCGCTTGGTCTGGC GAGGCTAAGCGCCTTGTTGATGCTGGCAAGCTGAAGGCCGGCGAGGCCAAGGTCTTCGTTTAA |
| Gene | >Pro_DTO377G3_2|g2508.t1 ATGGCTGCTGCTCAAGTTGTTGACATTACCCTCCCTACCTTGCCTCAGGGCTGGGCTGGTGAGAAGGATTTCAAG ATTGTCGGTGCTCTGTCCGGTGCCACCAAGCGCAACGTGGAGCCCGTTGGCCCGCACTTCCTGGCTCACGCTCGC CGAGTAAGTTCTTCAAATTCACTCATTCTTGTTTCGTCAGAATTAACCACATTCTAGTCTCGTCACAACCGTACT TTCTCCGAGGATGAGCGCCTCCAGGCCCAGAACAATGTCAAAAAGACCGAGACTGAGGAGGATGATGATATCTCT GAAGATGAGGATCCTGTCATGCTTGCCCGTGAGGCCAAGGACTGGAAGGTCAGTAATGTAACATTTATTCTGGCT GGTCATTTTCTAACTCCTAGCAGGGCCAGGATCACTACGCCGTCTTGGGTTTGAAAAAGTACCGCTGGCGTGCAA CCCCCGAGCAGATCAAGCGGGCTCACCGCAAGAAGGTCCTGCGTCACCACCCTGACAAGAAGGCCGCCCAGGGTA ACAGCGATGAGAACGACAGCTTCTTCAAGTGTATCCAGAAGGCTACCGATCTGCTTCTCGACCCTACTCGTCGTC GCCAGTTCGATTCCGTCGACGACAACGCTGACGTTGAGCCCCCCACTAAGAAGCTCACCGGTAGCAAGTTCTACA AGGCCTGGGGCCCTGTTTTCGTTGCAGAGGGTCGCTTCTCCAATAAGCAGCCTGTGCCCACACTCGGAGACGAGA ACAGCACTCAGGAGCATGTCGAGACTTTCTACAACTTCTGGTACAATGTTGACAGCTGGAGGACTTTCGAGTACC TTGATGAGGATGTGCCTGATGATGGAGAGAGTCGTGACCAGAAACGTCATGTGGAGAAGAAGAACGCCAATGCCC GCCGCAAGCGCAAGACCGAGGACACCGTTCGTCTGCGTGAGCTCGTTGACGAGTGTCTCGCTTCCGATGAGCGTA TTAAGAAGTTCCGCCAGCAGGCTCGTGCCGGCAAAGACGCTAAGCGTCTCGCCAAGGAGGAGGAGATGCGTCGTC TCAAGGAGGAGAAGGAGAAAGCCAAGGCCGCCGAGGAGCAGCGCAAGAAGGACGCTGAGGAGGCCGCCAAGGCTG ACCGTGAGAAGAATAAGAAGGCTAAAGAGGCCGCTAAGAACGCTTCCAAGAAGAACAAGCGTATCCTCAAGGGCT CCGTCAAGGATGTCAACTACTTCGCCGCCGGTGAGCCCACTCCCGCTGATATCGACAATGTCCTCAGCGATGTCG ACCTCATCATGGCCAAGATCGATGTTGATGAGCTTGCCGTTCTGGCTGAGAAGCTCACCATTGCCGGCAGTGATG GCGCTGCTGTCAAGACCGCTTGGTCTGGCGAGGCTAAGCGCCTTGTTGATGCTGGCAAGCTGAAGGCCGGCGAGG CCAAGGTCTTCGTTTAA |