© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2506.t1 |
| Gene name | |
| Location | scaffold_03:207265..208270 |
| Strand | + |
| Gene length (bp) | 1005 |
| Transcript length (bp) | 786 |
| Coding sequence length (bp) | 786 |
| Protein length (aa) | 262 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 9.8E-18 | 8 | 64 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 42 | 59 | 17 |
| 3 | 96 | 118 | 22 |
| 4 | 128 | 150 | 22 |
| 5 | 163 | 185 | 22 |
| 6 | 189 | 211 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 38.74 | 19.14 | 58.35 |
| 5d_25C | Five days - 25 degrees Celsius | 36.89 | 18.15 | 55.63 |
| 7d_25C | Seven days - 25 degrees Celsius | 26.85 | 12.11 | 41.58 |
| 10d_25C | Ten days - 25 degrees Celsius | 25.79 | 11.46 | 40.12 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.85 | 7.49 | 30.21 |
| 7d_30C | Seven days - 30 degrees Celsius | 30.03 | 13.73 | 46.34 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.908838 | no |
| 3d_25C | 7d_25C | 0.238437 | no |
| 3d_25C | 7d_15C | 0.015558 | yes |
| 3d_25C | 7d_30C | 0.444283 | no |
| 3d_25C | 10d_25C | 0.179647 | no |
| 5d_25C | 7d_25C | 0.317716 | no |
| 5d_25C | 7d_15C | 0.024657 | yes |
| 5d_25C | 7d_30C | 0.553273 | no |
| 5d_25C | 10d_25C | 0.250020 | no |
| 7d_25C | 7d_15C | 0.323031 | no |
| 7d_25C | 7d_30C | 0.789406 | no |
| 7d_25C | 10d_25C | 0.934406 | no |
| 7d_15C | 7d_30C | 0.154640 | no |
| 7d_15C | 10d_25C | 0.389166 | no |
| 7d_30C | 10d_25C | 0.697953 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2506.t1 MDNRVAENVLGTLGAVCWSVQLIPQIVINYRRHDTEGLQGSMMLLWATAGVPLGVYNIVEEFNIALRIQPQILTT LSLITWAQCLYYGKKYRIMKCCVAVTSLLLLFGGIEAGLIFALQAAKRRGLEWPLILMAVLSACLLAAGVLRHYW DIYVHRTVRGISFIFVGIDAAGDLFSLLSVLFGSTISALGIIIYGTELTLWVGIFICGGIFNLRPWIKERSEQRN GNLQEPVSLHPMPSSTSVFRTASASQVTERRPWQSS* |
| Coding | >Pro_DTO377G3_2|g2506.t1 ATGGACAATCGAGTTGCAGAGAATGTTCTCGGTACCCTGGGTGCAGTATGCTGGTCTGTCCAACTCATTCCTCAA ATAGTCATCAATTACAGGAGACATGACACTGAAGGCCTACAAGGGTCAATGATGCTCTTATGGGCCACCGCAGGG GTTCCCCTCGGGGTGTACAACATTGTGGAAGAATTCAACATTGCCCTGAGGATTCAGCCTCAAATCCTAACGACA CTCAGCCTAATTACTTGGGCGCAGTGTCTCTACTATGGAAAGAAATACCGAATCATGAAATGCTGTGTCGCAGTC ACTTCGCTTCTGCTGCTGTTCGGCGGCATTGAAGCAGGACTTATATTTGCGTTGCAAGCTGCGAAAAGGCGCGGA TTAGAATGGCCTCTCATCTTGATGGCAGTTTTGAGTGCGTGCCTACTTGCAGCAGGTGTACTGAGACATTACTGG GATATCTATGTCCACCGGACTGTCCGAGGAATCAGCTTCATTTTTGTCGGTATTGACGCTGCTGGGGACTTGTTT TCGCTCCTCTCTGTCTTGTTTGGATCGACTATTTCTGCTCTTGGGATAATTATTTATGGAACTGAATTGACCCTT TGGGTGGGCATATTCATCTGCGGCGGTATTTTCAACCTCCGGCCTTGGATTAAAGAGCGCTCCGAGCAGCGAAAT GGCAATCTGCAGGAACCGGTGTCCCTACATCCAATGCCATCGTCGACTTCTGTGTTTAGGACCGCATCCGCATCT CAAGTGACCGAAAGAAGGCCATGGCAGAGTTCGTAA |
| Transcript | >Pro_DTO377G3_2|g2506.t1 ATGGACAATCGAGTTGCAGAGAATGTTCTCGGTACCCTGGGTGCAGTATGCTGGTCTGTCCAACTCATTCCTCAA ATAGTCATCAATTACAGGAGACATGACACTGAAGGCCTACAAGGGTCAATGATGCTCTTATGGGCCACCGCAGGG GTTCCCCTCGGGGTGTACAACATTGTGGAAGAATTCAACATTGCCCTGAGGATTCAGCCTCAAATCCTAACGACA CTCAGCCTAATTACTTGGGCGCAGTGTCTCTACTATGGAAAGAAATACCGAATCATGAAATGCTGTGTCGCAGTC ACTTCGCTTCTGCTGCTGTTCGGCGGCATTGAAGCAGGACTTATATTTGCGTTGCAAGCTGCGAAAAGGCGCGGA TTAGAATGGCCTCTCATCTTGATGGCAGTTTTGAGTGCGTGCCTACTTGCAGCAGGTGTACTGAGACATTACTGG GATATCTATGTCCACCGGACTGTCCGAGGAATCAGCTTCATTTTTGTCGGTATTGACGCTGCTGGGGACTTGTTT TCGCTCCTCTCTGTCTTGTTTGGATCGACTATTTCTGCTCTTGGGATAATTATTTATGGAACTGAATTGACCCTT TGGGTGGGCATATTCATCTGCGGCGGTATTTTCAACCTCCGGCCTTGGATTAAAGAGCGCTCCGAGCAGCGAAAT GGCAATCTGCAGGAACCGGTGTCCCTACATCCAATGCCATCGTCGACTTCTGTGTTTAGGACCGCATCCGCATCT CAAGTGACCGAAAGAAGGCCATGGCAGAGTTCGTAA |
| Gene | >Pro_DTO377G3_2|g2506.t1 ATGGACAATCGAGTTGCAGAGAATGTTCTCGGTACCCTGGGTGCAGTGGGTTCTATTTCCCGATTTTCCCGATTG GTAGAGCGAACTAACTATTCTTTAGGTATGCTGGTCTGTCCAAGTATGCGGTTGCTGTGTGCCAATTACTTTTGA GCCCGCACTGATCACATTATACAGCTCATTCCTCAAATAGTCATCAATTACAGGAGACATGACACTGAAGGCCTA CAAGGGTCAATGATGCTCTTATGGGCCACCGCAGGGGTTCCCCTCGGGGTGTACAACATTGTGGAAGAATTCAAC ATTGCCCTGAGGATTCAGCCTCAAATCCTAACGACACTCAGCCTAATTACTTGGGCGCAGTGTCTCTACTATGGA AAGGTAAACACTTTGCTTTATATTCAACATTATCCTCATAATACTCATATAAACTCAGAAATACCGAATCATGAA ATGCTGTGTCGCAGTCACTTCGCTTCTGCTGCTGTTCGGCGGCATTGAAGCAGGACTTATATTTGCGTTGCAAGC TGCGAAAAGGCGCGGATTAGAATGGCCTCTCATCTTGATGGCAGTTTTGAGTGCGTGCCTACTTGCAGCAGGTGT ACTGAGACATTACTGGGATATCTATGTCCACCGGACTGTCCGAGGAATCAGCTTCATTTTTGTCGGTATTGACGC TGCTGGGGACTTGTTTTCGCTCCTCTCTGTCTGTAGGTCAACTTCATCGTTAGGTAGAGATGGTCAGCGGCTAAT ATGCAAGCAGTGTTTGGATCGACTATTTCTGCTCTTGGGATAATTATTTATGGAACTGAATTGACCCTTTGGGTG GGCATATTCATCTGCGGCGGTATTTTCAACCTCCGGCCTTGGATTAAAGAGCGCTCCGAGCAGCGAAATGGCAAT CTGCAGGAACCGGTGTCCCTACATCCAATGCCATCGTCGACTTCTGTGTTTAGGACCGCATCCGCATCTCAAGTG ACCGAAAGAAGGCCATGGCAGAGTTCGTAA |