© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2500.t1 |
| Gene name | |
| Location | scaffold_03:197088..198231 |
| Strand | - |
| Gene length (bp) | 1143 |
| Transcript length (bp) | 888 |
| Coding sequence length (bp) | 888 |
| Protein length (aa) | 296 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 1.3E-09 | 6 | 148 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 122.82 | 74.63 | 171.01 |
| 5d_25C | Five days - 25 degrees Celsius | 123.14 | 74.84 | 171.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 110.29 | 66.34 | 154.25 |
| 10d_25C | Ten days - 25 degrees Celsius | 92.87 | 55.44 | 130.29 |
| 7d_15C | Seven days - 15 degrees Celsius | 209.71 | 125.11 | 294.30 |
| 7d_30C | Seven days - 30 degrees Celsius | 82.33 | 47.70 | 116.96 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.993732 | no |
| 3d_25C | 7d_25C | 0.711796 | no |
| 3d_25C | 7d_15C | 0.008469 | yes |
| 3d_25C | 7d_30C | 0.073778 | no |
| 3d_25C | 10d_25C | 0.227225 | no |
| 5d_25C | 7d_25C | 0.702878 | no |
| 5d_25C | 7d_15C | 0.008469 | yes |
| 5d_25C | 7d_30C | 0.070025 | no |
| 5d_25C | 10d_25C | 0.223181 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.221825 | no |
| 7d_25C | 10d_25C | 0.509486 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.683497 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2500.t1 MSSIAKTVIATGTSSGLGFETIKQLLQQTQPYSFILGVRDTEKTRVAYDDLKFDTSKHSVSILPLDLLNLKSVQS FAKQALSELGKRPLNYLFLIAGFLASAEGPGPHGSQWCESYVVNHLAQHYLTHEFAETLSASRSRIVIVSSGAIR NVRGGDPATLDIDLKANSGANARVVYSASKFTQLLGAHYWRRSLPNCTVVAVSPGLIPNTKLAQHSSLGLSMDMP DAKTVPEGAQNILRAVTVENLPADPEQIFLTSWGEWWPKDVYALSLDPALQDKWCLSKEDIEKSEPVFKE* |
| Coding | >Pro_DTO377G3_2|g2500.t1 ATGTCATCAATCGCAAAAACTGTCATCGCGACAGGCACCTCGTCCGGCTTGGGATTTGAAACAATCAAGCAGTTA CTCCAGCAGACACAGCCGTACAGCTTCATTCTAGGCGTTCGTGACACAGAAAAGACACGAGTCGCGTACGATGAT CTGAAATTCGACACTTCAAAGCACAGCGTCTCTATCTTGCCCCTGGATCTTCTGAATCTTAAGAGTGTGCAGAGC TTTGCCAAACAAGCACTCTCTGAATTGGGCAAAAGGCCGTTGAACTATCTTTTCCTTATTGCGGGGTTCCTTGCC AGCGCTGAAGGGCCGGGGCCTCATGGCTCACAATGGTGCGAATCATACGTGGTAAACCATCTAGCCCAGCATTAC CTGACACACGAATTTGCTGAGACCCTGTCTGCCTCGCGATCACGTATCGTCATTGTATCTTCGGGTGCAATTCGT AATGTGAGAGGAGGCGATCCAGCCACTCTTGACATTGACCTAAAAGCAAACTCCGGTGCAAACGCCAGAGTAGTG TATAGTGCATCGAAATTCACTCAGCTTCTGGGTGCACACTACTGGCGTCGTAGCCTCCCAAATTGCACAGTCGTG GCTGTCTCGCCAGGTCTCATCCCTAACACCAAGCTTGCCCAGCATTCGAGCTTAGGATTGTCCATGGATATGCCC GATGCCAAGACCGTGCCAGAGGGTGCCCAGAATATCCTCCGCGCGGTCACGGTCGAGAATCTTCCCGCTGACCCG GAACAGATTTTCTTGACTAGCTGGGGTGAATGGTGGCCCAAGGATGTCTATGCGTTGAGTCTTGATCCTGCGCTG CAAGACAAGTGGTGTTTGAGCAAGGAGGATATCGAGAAGTCCGAGCCTGTGTTCAAGGAATAA |
| Transcript | >Pro_DTO377G3_2|g2500.t1 ATGTCATCAATCGCAAAAACTGTCATCGCGACAGGCACCTCGTCCGGCTTGGGATTTGAAACAATCAAGCAGTTA CTCCAGCAGACACAGCCGTACAGCTTCATTCTAGGCGTTCGTGACACAGAAAAGACACGAGTCGCGTACGATGAT CTGAAATTCGACACTTCAAAGCACAGCGTCTCTATCTTGCCCCTGGATCTTCTGAATCTTAAGAGTGTGCAGAGC TTTGCCAAACAAGCACTCTCTGAATTGGGCAAAAGGCCGTTGAACTATCTTTTCCTTATTGCGGGGTTCCTTGCC AGCGCTGAAGGGCCGGGGCCTCATGGCTCACAATGGTGCGAATCATACGTGGTAAACCATCTAGCCCAGCATTAC CTGACACACGAATTTGCTGAGACCCTGTCTGCCTCGCGATCACGTATCGTCATTGTATCTTCGGGTGCAATTCGT AATGTGAGAGGAGGCGATCCAGCCACTCTTGACATTGACCTAAAAGCAAACTCCGGTGCAAACGCCAGAGTAGTG TATAGTGCATCGAAATTCACTCAGCTTCTGGGTGCACACTACTGGCGTCGTAGCCTCCCAAATTGCACAGTCGTG GCTGTCTCGCCAGGTCTCATCCCTAACACCAAGCTTGCCCAGCATTCGAGCTTAGGATTGTCCATGGATATGCCC GATGCCAAGACCGTGCCAGAGGGTGCCCAGAATATCCTCCGCGCGGTCACGGTCGAGAATCTTCCCGCTGACCCG GAACAGATTTTCTTGACTAGCTGGGGTGAATGGTGGCCCAAGGATGTCTATGCGTTGAGTCTTGATCCTGCGCTG CAAGACAAGTGGTGTTTGAGCAAGGAGGATATCGAGAAGTCCGAGCCTGTGTTCAAGGAATAA |
| Gene | >Pro_DTO377G3_2|g2500.t1 ATGTCATCAATCGCAAAAACTGTCATCGCGACAGGCACCTCGTCCGGCTTGGTAAGAATTATATGCCCTTGGAAT ATTCAGGATCCTAACATCGGTCATAGGGATTTGAAACAATCAAGCAGTTACTCCAGCAGACACAGCCGTACAGCT TCATTCTAGGCGTTCGTGACACAGAAAAGACACGAGTCGCGTACGATGATCTGAAATTCGACACTTCAAAGCACA GCGTCTCTATCTTGCCCCTGGATCTTCTGAATCTTAAGAGTGTGCAGAGCTTTGCCAAACAAGCACTCTCTGAAT TGGGCAAAAGGCCGTTGAACTATCTTTTCCTTATTGCGGGGTTCCTTGCCAGCGCTGAAGGGCCGGGGCCTCATG GCTCACAATGGTGCGAATCATACGTGGTAAACCATCTAGGTATGTCAAAACGACTCATCGGCTACTAAAGGAGTC TAGGAGGCTAGAGCTAAACATTCATCTATCGCAACCCAGCCCAGCATTACCTGACACACGAATTTGCTGAGACCC TGTCTGCCTCGCGATCACGTATCGTCATTGTATCTTCGGGTGCAATTCGTAATGTGAGAGGAGGCGATCCAGGTG AGTTTAGTTCCATTCTCCCAGCTGTGTCGCTGTCCGAAGCAAAGTTGTTCACAAGGCTGACTTCATATTAGCCAC TCTTGACATTGACCTAAAAGCAAACTCCGGTGCAAACGCCAGAGTAGTGTATAGTGCATCGAAATTCACTCAGCT TCTGGGTGCACACTACTGGCGTCGTAGCCTCCCAAATTGCACAGTCGTGGCTGTCTCGCCAGGTCTCATCCCTAA CACCAAGCTTGCCCAGCATTCGAGCTTAGGATTGTCCATGGATATGCCCGATGCCAAGACCGTGCCAGAGGGTAA GGATCTTTGCATTTGGATTTTTGATTTGAAGACGATATCTAACAATTAATAGGTGCCCAGAATATCCTCCGCGCG GTCACGGTCGAGAATCTTCCCGCTGACCCGGAACAGATTTTCTTGACTAGCTGGGGTGAATGGTGGCCCAAGGAT GTCTATGCGTTGAGTCTTGATCCTGCGCTGCAAGACAAGTGGTGTTTGAGCAAGGAGGATATCGAGAAGTCCGAG CCTGTGTTCAAGGAATAA |