© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g25.t1 |
| Gene name | |
| Location | scaffold_01:64091..64808 |
| Strand | - |
| Gene length (bp) | 717 |
| Transcript length (bp) | 540 |
| Coding sequence length (bp) | 540 |
| Protein length (aa) | 180 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 52 | 74 | 22 |
| 3 | 81 | 103 | 22 |
| 4 | 152 | 174 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 14.64 | 3.98 | 25.31 |
| 5d_25C | Five days - 25 degrees Celsius | 11.22 | 2.85 | 19.58 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.19 | 2.15 | 18.23 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.87 | 0.80 | 10.95 |
| 7d_15C | Seven days - 15 degrees Celsius | 12.17 | 2.84 | 21.49 |
| 7d_30C | Seven days - 30 degrees Celsius | 14.00 | 3.70 | 24.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.595907 | no |
| 3d_25C | 7d_25C | 0.456096 | no |
| 3d_25C | 7d_15C | 0.742736 | no |
| 3d_25C | 7d_30C | 0.945229 | no |
| 3d_25C | 10d_25C | 0.035243 | yes |
| 5d_25C | 7d_25C | 0.878727 | no |
| 5d_25C | 7d_15C | 0.901313 | no |
| 5d_25C | 7d_30C | 0.665276 | no |
| 5d_25C | 10d_25C | 0.157727 | no |
| 7d_25C | 7d_15C | 0.764122 | no |
| 7d_25C | 7d_30C | 0.522791 | no |
| 7d_25C | 10d_25C | 0.263767 | no |
| 7d_15C | 7d_30C | 0.809956 | no |
| 7d_15C | 10d_25C | 0.119073 | no |
| 7d_30C | 10d_25C | 0.041603 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g25.t1 MAVRRRREMRRRYHWPELQLNIWIMVVLSCAATCLGIFSWFMTVQSQMHLGTPWLFPYMVVSSALGVCFIFLIMI LAARHFLLPGIIIIGSFILFVLWLTGLIETSLQLYGVVGNVNDNCQIYVTNNKAWGNNINTLAWLTQSTICNCWR TAFALELVNTIFYLWMMIMSWQVNRDVYD* |
| Coding | >Pro_DTO377G3_2|g25.t1 ATGGCAGTCCGCAGGCGTCGCGAAATGCGCCGCCGCTACCACTGGCCCGAACTCCAACTCAACATCTGGATTATG GTTGTGCTATCGTGCGCAGCGACATGTCTGGGGATATTCTCGTGGTTCATGACCGTGCAATCACAAATGCATCTT GGGACGCCATGGCTCTTCCCTTACATGGTCGTCAGCAGCGCACTCGGCGTGTGCTTCATATTCCTAATTATGATC CTTGCAGCGCGCCACTTCCTCTTACCGGGCATTATCATCATCGGCAGCTTTATTCTCTTTGTGCTGTGGCTGACG GGTCTGATTGAGACTTCGCTGCAGCTGTATGGCGTTGTCGGGAATGTGAATGATAATTGCCAAATCTACGTGACG AACAATAAGGCTTGGGGGAATAATATCAACACCTTGGCTTGGTTGACGCAGAGTACTATTTGCAATTGCTGGAGA ACTGCCTTTGCGCTCGAGCTTGTGAACACGATTTTCTATCTTTGGATGATGATTATGTCGTGGCAGGTGAATCGG GATGTTTATGATTGA |
| Transcript | >Pro_DTO377G3_2|g25.t1 ATGGCAGTCCGCAGGCGTCGCGAAATGCGCCGCCGCTACCACTGGCCCGAACTCCAACTCAACATCTGGATTATG GTTGTGCTATCGTGCGCAGCGACATGTCTGGGGATATTCTCGTGGTTCATGACCGTGCAATCACAAATGCATCTT GGGACGCCATGGCTCTTCCCTTACATGGTCGTCAGCAGCGCACTCGGCGTGTGCTTCATATTCCTAATTATGATC CTTGCAGCGCGCCACTTCCTCTTACCGGGCATTATCATCATCGGCAGCTTTATTCTCTTTGTGCTGTGGCTGACG GGTCTGATTGAGACTTCGCTGCAGCTGTATGGCGTTGTCGGGAATGTGAATGATAATTGCCAAATCTACGTGACG AACAATAAGGCTTGGGGGAATAATATCAACACCTTGGCTTGGTTGACGCAGAGTACTATTTGCAATTGCTGGAGA ACTGCCTTTGCGCTCGAGCTTGTGAACACGATTTTCTATCTTTGGATGATGATTATGTCGTGGCAGGTGAATCGG GATGTTTATGATTGA |
| Gene | >Pro_DTO377G3_2|g25.t1 ATGGCAGTCCGCAGGCGTCGCGAAATGCGCCGCCGCTACCACTGGCCCGAACTCCAACTCAACATCTGGATTATG GTTGTGCTATCGTGCGCAGCGACATGTCTGGGGATATTCTCGTGGTTCATGACCGTGCAATCACAAATGCATCTT GGGACGCCATGGTAAGTGATCTATATTTATCTCTATATTATCCATTATCCGTGTGGCTACGTGCATACTCATAAC CTACCCCCCACATTCTTCCCACATGTCATAGTCAATACAGGATCTATACTAACATCTCCAGGCTCTTCCCTTACA TGGTCGTCAGCAGCGCACTCGGCGTGTGCTTCATATTCCTAATTATGATCCTTGCAGCGCGCCACTTCCTCTTAC CGGGCATTATCATCATCGGCAGCTTTATTCTCTTTGTGCTGTGGCTGACGGGTCTGATTGAGACTTCGCTGCAGC TGTATGGCGTTGTCGGGAATGTGAATGATAATTGCCAAATCTACGTGACGAACAATAAGGCTTGGGGGAATAATA TCAACACCTTGGCTTGGTTGACGCAGAGTACTATTTGTGAGTTCTCTTCTATGCCCTCTTTTGTATGTTTTGTAT ACTGACTTTATAGGCAATTGCTGGAGAACTGCCTTTGCGCTCGAGCTTGTGAACACGATTTTCTATCTTTGGATG ATGATTATGTCGTGGCAGGTGAATCGGGATGTTTATGATTGA |