© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2499.t1 |
| Gene name | |
| Location | scaffold_03:194747..196669 |
| Strand | + |
| Gene length (bp) | 1922 |
| Transcript length (bp) | 1806 |
| Coding sequence length (bp) | 1806 |
| Protein length (aa) | 602 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09286 | Pro-kuma_activ | Pro-kumamolisin, activation domain | 3.6E-36 | 36 | 176 |
| PF00082 | Peptidase_S8 | Subtilase family | 3.9E-08 | 347 | 518 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006508 | proteolysis | Yes |
| GO:0008236 | serine-type peptidase activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0008233 | peptidase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 25 | 0.999642 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 186.05 | 107.83 | 264.26 |
| 5d_25C | Five days - 25 degrees Celsius | 97.47 | 56.58 | 138.37 |
| 7d_25C | Seven days - 25 degrees Celsius | 71.40 | 41.14 | 101.66 |
| 10d_25C | Ten days - 25 degrees Celsius | 56.13 | 30.95 | 81.31 |
| 7d_15C | Seven days - 15 degrees Celsius | 107.64 | 55.00 | 160.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 96.89 | 53.40 | 140.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.002297 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.028871 | yes |
| 3d_25C | 7d_30C | 0.001804 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.209321 | no |
| 5d_25C | 7d_15C | 0.776836 | no |
| 5d_25C | 7d_30C | 0.988129 | no |
| 5d_25C | 10d_25C | 0.014377 | yes |
| 7d_25C | 7d_15C | 0.113824 | no |
| 7d_25C | 7d_30C | 0.235613 | no |
| 7d_25C | 10d_25C | 0.383597 | no |
| 7d_15C | 7d_30C | 0.767429 | no |
| 7d_15C | 10d_25C | 0.009446 | yes |
| 7d_30C | 10d_25C | 0.020140 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 3667 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2499.t1 MIASLFSRGALSLAVLSLLASSAAADVFESLSAVPQGWRYSRRPRADQPLKLQIALTQGDTAGFEEAVMEMSTPD HPSYGHHFTTHEEMKRMLQPSAESAESIRDWLEGAGITRIEQDADWMTFYTTVETANELLAANFQFYVSNVRHIE RLRTLKYSVPKALVPHINMIQPTTRFGQLRAHRGILHGQVKESDEAFRSNAVSAQPDCNSIITPQCLKDIYNIGD YQANDTNGNKVGFASYLEEYARYSDLALFEKNIAPSAKGQNFSVTRYNGGLNDQSSSGSSSEANLDLQYIVGVSS PVPVTEFSVGGRGELVPDLDQPDPNDNNNEPYLEFLQNVLKLDKKDLPQVISTSYGEDEQSIPEKYARSVCNLYS QLGSRGVSVIFSSGDSGVGSACLTNDGRNATRFPPQFPAACPWVTSVGATTHTAPEQAVYFSSGGFSDLWARPKW QEEAVSEYLEILGNRWSGLFNPKGRAFPDVTAQGRNYAIYDKGSLTSVDGTSCSAPAFAGVIALLNDARLKVNKP PMGFLNPWLYSTGRAGLKDIVDGGSTGCDGKSRFGGANNGGPSIPGASWNATKGWDPVSGLGSPNFATMRKLANA E* |
| Coding | >Pro_DTO377G3_2|g2499.t1 ATGATTGCATCCCTATTTAGTCGTGGAGCATTGTCGCTCGCGGTCTTGTCGCTTCTCGCGTCCTCTGCTGCAGCC GATGTATTTGAGAGTTTGTCTGCTGTTCCTCAAGGATGGAGATATTCTCGCAGGCCGCGTGCTGATCAGCCCTTG AAGTTACAGATCGCTCTGACACAGGGGGATACTGCCGGCTTCGAAGAGGCTGTGATGGAGATGTCAACCCCCGAT CACCCTAGCTACGGGCACCACTTCACCACCCACGAAGAAATGAAGCGGATGCTACAGCCCAGTGCGGAGTCCGCG GAGTCAATCCGTGACTGGCTCGAAGGCGCGGGTATTACCAGGATCGAACAGGATGCAGATTGGATGACCTTCTAC ACCACCGTGGAGACGGCAAATGAGCTGCTGGCAGCCAATTTCCAGTTCTACGTCAGTAATGTCAGGCACATTGAG CGTCTTCGCACACTCAAGTACTCAGTCCCGAAGGCTCTGGTGCCACACATCAACATGATCCAGCCAACCACCCGT TTCGGCCAGCTGCGCGCCCATCGGGGCATATTACACGGCCAGGTCAAGGAATCCGACGAGGCTTTCCGCTCAAAC GCCGTGTCCGCTCAGCCGGATTGCAACAGTATCATCACTCCTCAGTGTCTCAAGGATATATATAATATCGGTGAT TACCAGGCCAATGATACCAATGGGAACAAGGTCGGGTTTGCCAGCTACCTAGAGGAGTATGCACGATACTCCGAT CTGGCACTATTTGAGAAAAATATCGCGCCCTCTGCCAAGGGCCAGAACTTCTCCGTCACCAGGTACAACGGCGGT CTTAATGATCAAAGTTCCAGCGGTAGCAGCAGCGAGGCGAACCTGGACTTGCAGTACATTGTTGGAGTCAGCTCT CCTGTTCCCGTCACCGAATTTAGCGTTGGCGGCCGTGGTGAACTTGTTCCCGATCTCGACCAGCCTGATCCCAAT GATAACAACAACGAGCCATACCTTGAATTCCTCCAGAACGTGCTCAAGCTGGACAAAAAGGACCTTCCCCAGGTG ATTTCTACCTCCTATGGTGAGGACGAGCAGAGCATTCCCGAGAAGTACGCCCGCAGTGTTTGCAACTTGTACTCG CAGCTCGGTAGCCGTGGTGTATCCGTCATTTTCTCATCTGGCGACTCCGGCGTTGGGTCCGCGTGCCTGACGAAC GACGGCAGGAACGCGACCCGCTTCCCACCCCAGTTCCCCGCCGCCTGCCCGTGGGTGACATCAGTCGGCGCGACA ACCCACACCGCGCCCGAACAGGCCGTGTACTTCTCGTCCGGCGGCTTTTCCGATCTCTGGGCTCGCCCGAAATGG CAAGAGGAGGCCGTGAGTGAGTACCTCGAGATCCTGGGTAACCGCTGGTCTGGCCTCTTCAACCCTAAGGGTCGT GCCTTCCCCGATGTCACAGCCCAAGGTCGCAATTACGCTATATACGATAAGGGCTCGTTGACCAGCGTCGACGGC ACCTCCTGCTCGGCACCTGCCTTCGCCGGAGTCATCGCCCTCCTCAACGACGCTCGCCTCAAAGTCAACAAACCA CCAATGGGCTTCCTTAATCCTTGGCTGTACTCGACAGGGCGCGCCGGCTTAAAGGACATTGTCGATGGCGGCAGC ACGGGTTGCGATGGCAAGAGCCGCTTCGGTGGTGCCAATAACGGTGGTCCGTCGATCCCAGGTGCTAGCTGGAAC GCTACTAAGGGTTGGGACCCTGTTTCTGGTCTCGGGTCGCCCAACTTTGCTACCATGCGCAAGCTTGCGAACGCT GAGTAG |
| Transcript | >Pro_DTO377G3_2|g2499.t1 ATGATTGCATCCCTATTTAGTCGTGGAGCATTGTCGCTCGCGGTCTTGTCGCTTCTCGCGTCCTCTGCTGCAGCC GATGTATTTGAGAGTTTGTCTGCTGTTCCTCAAGGATGGAGATATTCTCGCAGGCCGCGTGCTGATCAGCCCTTG AAGTTACAGATCGCTCTGACACAGGGGGATACTGCCGGCTTCGAAGAGGCTGTGATGGAGATGTCAACCCCCGAT CACCCTAGCTACGGGCACCACTTCACCACCCACGAAGAAATGAAGCGGATGCTACAGCCCAGTGCGGAGTCCGCG GAGTCAATCCGTGACTGGCTCGAAGGCGCGGGTATTACCAGGATCGAACAGGATGCAGATTGGATGACCTTCTAC ACCACCGTGGAGACGGCAAATGAGCTGCTGGCAGCCAATTTCCAGTTCTACGTCAGTAATGTCAGGCACATTGAG CGTCTTCGCACACTCAAGTACTCAGTCCCGAAGGCTCTGGTGCCACACATCAACATGATCCAGCCAACCACCCGT TTCGGCCAGCTGCGCGCCCATCGGGGCATATTACACGGCCAGGTCAAGGAATCCGACGAGGCTTTCCGCTCAAAC GCCGTGTCCGCTCAGCCGGATTGCAACAGTATCATCACTCCTCAGTGTCTCAAGGATATATATAATATCGGTGAT TACCAGGCCAATGATACCAATGGGAACAAGGTCGGGTTTGCCAGCTACCTAGAGGAGTATGCACGATACTCCGAT CTGGCACTATTTGAGAAAAATATCGCGCCCTCTGCCAAGGGCCAGAACTTCTCCGTCACCAGGTACAACGGCGGT CTTAATGATCAAAGTTCCAGCGGTAGCAGCAGCGAGGCGAACCTGGACTTGCAGTACATTGTTGGAGTCAGCTCT CCTGTTCCCGTCACCGAATTTAGCGTTGGCGGCCGTGGTGAACTTGTTCCCGATCTCGACCAGCCTGATCCCAAT GATAACAACAACGAGCCATACCTTGAATTCCTCCAGAACGTGCTCAAGCTGGACAAAAAGGACCTTCCCCAGGTG ATTTCTACCTCCTATGGTGAGGACGAGCAGAGCATTCCCGAGAAGTACGCCCGCAGTGTTTGCAACTTGTACTCG CAGCTCGGTAGCCGTGGTGTATCCGTCATTTTCTCATCTGGCGACTCCGGCGTTGGGTCCGCGTGCCTGACGAAC GACGGCAGGAACGCGACCCGCTTCCCACCCCAGTTCCCCGCCGCCTGCCCGTGGGTGACATCAGTCGGCGCGACA ACCCACACCGCGCCCGAACAGGCCGTGTACTTCTCGTCCGGCGGCTTTTCCGATCTCTGGGCTCGCCCGAAATGG CAAGAGGAGGCCGTGAGTGAGTACCTCGAGATCCTGGGTAACCGCTGGTCTGGCCTCTTCAACCCTAAGGGTCGT GCCTTCCCCGATGTCACAGCCCAAGGTCGCAATTACGCTATATACGATAAGGGCTCGTTGACCAGCGTCGACGGC ACCTCCTGCTCGGCACCTGCCTTCGCCGGAGTCATCGCCCTCCTCAACGACGCTCGCCTCAAAGTCAACAAACCA CCAATGGGCTTCCTTAATCCTTGGCTGTACTCGACAGGGCGCGCCGGCTTAAAGGACATTGTCGATGGCGGCAGC ACGGGTTGCGATGGCAAGAGCCGCTTCGGTGGTGCCAATAACGGTGGTCCGTCGATCCCAGGTGCTAGCTGGAAC GCTACTAAGGGTTGGGACCCTGTTTCTGGTCTCGGGTCGCCCAACTTTGCTACCATGCGCAAGCTTGCGAACGCT GAGTAG |
| Gene | >Pro_DTO377G3_2|g2499.t1 ATGATTGCATCCCTATTTAGTCGTGGAGCATTGTCGCTCGCGGTCTTGTCGCTTCTCGCGTCCTCTGCTGCAGCC GATGTATTTGAGAGTTTGTCTGCTGTTCCTCAAGGTGAGCAACTTGCGTTCGAAACGAAACCGACGGAATTGATT CACTGACCCACCTTAGGATGGAGATATTCTCGCAGGCCGCGTGCTGATCAGCCCTTGAAGTTACAGATCGCTCTG ACACAGGGGGATACTGCCGGCTTCGAAGAGGCTGTGATGGAGATGTCAACCCCCGATCACCCTAGCTACGGGCAC CACTTCACCACCCACGAAGAAATGAAGCGGATGCTACAGCCCAGTGCGGAGTCCGCGGAGTCAATCCGTGACTGG CTCGAAGGCGCGGGTATTACCAGGATCGAACAGGATGCAGATTGGATGACCTTCTACACCACCGTGGAGACGGCA AATGAGCTGCTGGCAGCCAATTTCCAGTTCTACGTCAGTAATGTCAGGCACATTGAGCGTCTTCGCACACTCAAG TACTCAGTCCCGAAGGCTCTGGTGCCACACATCAACATGATCCAGCCAACCACCCGTTTCGGCCAGCTGCGCGCC CATCGGGGCATATTACACGGCCAGGTCAAGGAATCCGACGAGGCTTTCCGCTCAAACGCCGTGTCCGCTCAGCCG GATTGCAACAGTATCATCACTCCTCAGTGTCTCAAGGATATATATAATATCGGTGATTACCAGGCCAATGATACC AATGGGAACAAGGTCGGGTTTGCCAGCTACCTAGAGGAGTATGCACGATACTCCGATCTGGCACTATTTGAGAAA AATATCGCGCCCTCTGCCAAGGGCCAGAACTTCTCCGTCACCAGGTACAACGGCGGTCTTAATGATCAAAGTTCC AGCGGTAGCAGCAGCGAGGCGAACCTGGACTTGCAGTACATTGTTGGAGTCAGCTCTCCTGTTCCCGTCACCGAA TTTAGCGTTGGCGGCCGTGGTGAACTTGTTCCCGATCTCGACCAGCCTGATCCCAATGATAACAACAACGAGCCA TACCTTGAATTCCTCCAGAACGTGCTCAAGCTGGACAAAAAGGACCTTCCCCAGGTGATTTCTACCTCCTATGGT GAGGACGAGCAGGTATGACACCCACCCCCCCTTTGTTCGTGATTTTGTCGGTCTCTAATATCAACCTGTAGAGCA TTCCCGAGAAGTACGCCCGCAGTGTTTGCAACTTGTACTCGCAGCTCGGTAGCCGTGGTGTATCCGTCATTTTCT CATCTGGCGACTCCGGCGTTGGGTCCGCGTGCCTGACGAACGACGGCAGGAACGCGACCCGCTTCCCACCCCAGT TCCCCGCCGCCTGCCCGTGGGTGACATCAGTCGGCGCGACAACCCACACCGCGCCCGAACAGGCCGTGTACTTCT CGTCCGGCGGCTTTTCCGATCTCTGGGCTCGCCCGAAATGGCAAGAGGAGGCCGTGAGTGAGTACCTCGAGATCC TGGGTAACCGCTGGTCTGGCCTCTTCAACCCTAAGGGTCGTGCCTTCCCCGATGTCACAGCCCAAGGTCGCAATT ACGCTATATACGATAAGGGCTCGTTGACCAGCGTCGACGGCACCTCCTGCTCGGCACCTGCCTTCGCCGGAGTCA TCGCCCTCCTCAACGACGCTCGCCTCAAAGTCAACAAACCACCAATGGGCTTCCTTAATCCTTGGCTGTACTCGA CAGGGCGCGCCGGCTTAAAGGACATTGTCGATGGCGGCAGCACGGGTTGCGATGGCAAGAGCCGCTTCGGTGGTG CCAATAACGGTGGTCCGTCGATCCCAGGTGCTAGCTGGAACGCTACTAAGGGTTGGGACCCTGTTTCTGGTCTCG GGTCGCCCAACTTTGCTACCATGCGCAAGCTTGCGAACGCTGAGTAG |