© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2495.t1 |
| Gene name | |
| Location | scaffold_03:183158..184415 |
| Strand | + |
| Gene length (bp) | 1257 |
| Transcript length (bp) | 1257 |
| Coding sequence length (bp) | 1257 |
| Protein length (aa) | 419 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00042 | Globin | Globin | 1.6E-13 | 33 | 137 |
| PF00175 | NAD_binding_1 | Oxidoreductase NAD-binding domain | 2.5E-11 | 282 | 392 |
| PF00970 | FAD_binding_6 | Oxidoreductase FAD-binding domain | 4.3E-05 | 158 | 267 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 61.92 | 35.52 | 88.32 |
| 5d_25C | Five days - 25 degrees Celsius | 33.04 | 17.25 | 48.82 |
| 7d_25C | Seven days - 25 degrees Celsius | 57.02 | 30.14 | 83.91 |
| 10d_25C | Ten days - 25 degrees Celsius | 30.20 | 14.89 | 45.52 |
| 7d_15C | Seven days - 15 degrees Celsius | 36.77 | 15.93 | 57.62 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.88 | 9.75 | 32.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.006371 | yes |
| 3d_25C | 7d_25C | 0.813386 | no |
| 3d_25C | 7d_15C | 0.054049 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.001804 | yes |
| 5d_25C | 7d_25C | 0.028409 | yes |
| 5d_25C | 7d_15C | 0.779065 | no |
| 5d_25C | 7d_30C | 0.093846 | no |
| 5d_25C | 10d_25C | 0.811285 | no |
| 7d_25C | 7d_15C | 0.122676 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.011688 | yes |
| 7d_15C | 7d_30C | 0.047513 | yes |
| 7d_15C | 10d_25C | 0.575212 | no |
| 7d_30C | 10d_25C | 0.210395 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2495.t1 MASNPGMTPDQIALIKATVPVLVEHGNTITTVFYRNMIEAHPELNTVFNSTNQANGHQPRALAGALYAYASHIDD LGALSSAVELICNKHASLYIKPDDYKIVGKYLLEAMGEVLGAALTPEIHDAWGAAYWQLADIMIGREKQLYEHAE GWTDWREFKIVNKVKESEEITSFYLAPVDEKPLPAFQPGQYISIQTYVPALKHLQARQYSLSDQPKPDYYRISVK RELGLDPAAPGAAAHPGYISNLLHDTVNIGDKLNVSHPYGDFFLPPVESEAGNPIVLISAGVGLTPLTSMLNTLI SKSPATRKLHFIHGARSSRVRAFKLHISELPNEFPSIRTTSYTSHPSEGEVEGVDYDHAGRVDLTKLKDQDLFLD DAKTDYYICGPGKFMIDMESSLKARGVSADRIKMELFGTGGIH* |
| Coding | >Pro_DTO377G3_2|g2495.t1 ATGGCTTCTAATCCGGGAATGACTCCAGACCAGATCGCGCTCATTAAGGCGACGGTGCCGGTTCTCGTGGAACAT GGCAACACCATCACGACTGTCTTCTATCGCAACATGATCGAAGCCCACCCGGAGCTGAACACCGTTTTCAACAGT ACCAACCAGGCCAATGGGCATCAACCTCGTGCGTTGGCCGGTGCACTCTACGCATATGCATCGCATATCGACGAT CTCGGCGCACTGAGCTCGGCGGTTGAGTTGATCTGCAACAAGCATGCCTCCTTGTATATCAAGCCCGACGATTAC AAGATTGTTGGCAAGTACCTCCTCGAAGCCATGGGCGAGGTGCTCGGCGCGGCATTGACCCCAGAAATCCACGAC GCATGGGGTGCAGCCTACTGGCAGCTCGCAGATATCATGATTGGCCGCGAAAAGCAGCTTTACGAACACGCCGAG GGCTGGACTGACTGGAGAGAATTCAAGATTGTGAACAAAGTCAAAGAATCCGAGGAAATCACATCCTTCTATCTC GCCCCTGTCGATGAAAAACCACTGCCGGCCTTCCAGCCCGGCCAGTACATTTCCATCCAAACCTACGTCCCGGCT CTCAAGCACTTGCAGGCCAGACAGTACTCTCTCAGCGACCAGCCGAAGCCGGACTACTATCGCATCAGTGTGAAA AGAGAACTGGGCCTCGACCCAGCCGCTCCAGGTGCCGCCGCTCACCCGGGTTACATCTCAAATCTGCTACACGAT ACAGTCAACATCGGCGACAAGCTCAATGTCTCCCATCCCTACGGTGACTTTTTCCTTCCCCCTGTCGAGTCGGAA GCAGGCAACCCAATCGTGTTGATCTCCGCCGGTGTGGGTCTAACACCACTGACGTCGATGCTGAACACATTGATT TCCAAATCACCCGCAACGCGCAAGCTGCATTTCATTCATGGCGCACGTTCATCACGCGTGCGTGCTTTCAAGTTG CACATCTCCGAGCTTCCAAACGAATTCCCCTCCATTCGAACCACATCCTACACGAGTCATCCTTCCGAGGGAGAG GTGGAGGGCGTGGACTACGACCATGCCGGGCGGGTGGACTTGACTAAGTTGAAGGATCAGGACTTGTTCCTGGAT GATGCCAAGACGGATTACTATATCTGTGGACCCGGAAAGTTCATGATCGATATGGAGTCGAGTCTCAAGGCCAGG GGTGTGAGTGCCGATCGCATCAAGATGGAATTGTTCGGAACGGGAGGTATTCATTGA |
| Transcript | >Pro_DTO377G3_2|g2495.t1 ATGGCTTCTAATCCGGGAATGACTCCAGACCAGATCGCGCTCATTAAGGCGACGGTGCCGGTTCTCGTGGAACAT GGCAACACCATCACGACTGTCTTCTATCGCAACATGATCGAAGCCCACCCGGAGCTGAACACCGTTTTCAACAGT ACCAACCAGGCCAATGGGCATCAACCTCGTGCGTTGGCCGGTGCACTCTACGCATATGCATCGCATATCGACGAT CTCGGCGCACTGAGCTCGGCGGTTGAGTTGATCTGCAACAAGCATGCCTCCTTGTATATCAAGCCCGACGATTAC AAGATTGTTGGCAAGTACCTCCTCGAAGCCATGGGCGAGGTGCTCGGCGCGGCATTGACCCCAGAAATCCACGAC GCATGGGGTGCAGCCTACTGGCAGCTCGCAGATATCATGATTGGCCGCGAAAAGCAGCTTTACGAACACGCCGAG GGCTGGACTGACTGGAGAGAATTCAAGATTGTGAACAAAGTCAAAGAATCCGAGGAAATCACATCCTTCTATCTC GCCCCTGTCGATGAAAAACCACTGCCGGCCTTCCAGCCCGGCCAGTACATTTCCATCCAAACCTACGTCCCGGCT CTCAAGCACTTGCAGGCCAGACAGTACTCTCTCAGCGACCAGCCGAAGCCGGACTACTATCGCATCAGTGTGAAA AGAGAACTGGGCCTCGACCCAGCCGCTCCAGGTGCCGCCGCTCACCCGGGTTACATCTCAAATCTGCTACACGAT ACAGTCAACATCGGCGACAAGCTCAATGTCTCCCATCCCTACGGTGACTTTTTCCTTCCCCCTGTCGAGTCGGAA GCAGGCAACCCAATCGTGTTGATCTCCGCCGGTGTGGGTCTAACACCACTGACGTCGATGCTGAACACATTGATT TCCAAATCACCCGCAACGCGCAAGCTGCATTTCATTCATGGCGCACGTTCATCACGCGTGCGTGCTTTCAAGTTG CACATCTCCGAGCTTCCAAACGAATTCCCCTCCATTCGAACCACATCCTACACGAGTCATCCTTCCGAGGGAGAG GTGGAGGGCGTGGACTACGACCATGCCGGGCGGGTGGACTTGACTAAGTTGAAGGATCAGGACTTGTTCCTGGAT GATGCCAAGACGGATTACTATATCTGTGGACCCGGAAAGTTCATGATCGATATGGAGTCGAGTCTCAAGGCCAGG GGTGTGAGTGCCGATCGCATCAAGATGGAATTGTTCGGAACGGGAGGTATTCATTGA |
| Gene | >Pro_DTO377G3_2|g2495.t1 ATGGCTTCTAATCCGGGAATGACTCCAGACCAGATCGCGCTCATTAAGGCGACGGTGCCGGTTCTCGTGGAACAT GGCAACACCATCACGACTGTCTTCTATCGCAACATGATCGAAGCCCACCCGGAGCTGAACACCGTTTTCAACAGT ACCAACCAGGCCAATGGGCATCAACCTCGTGCGTTGGCCGGTGCACTCTACGCATATGCATCGCATATCGACGAT CTCGGCGCACTGAGCTCGGCGGTTGAGTTGATCTGCAACAAGCATGCCTCCTTGTATATCAAGCCCGACGATTAC AAGATTGTTGGCAAGTACCTCCTCGAAGCCATGGGCGAGGTGCTCGGCGCGGCATTGACCCCAGAAATCCACGAC GCATGGGGTGCAGCCTACTGGCAGCTCGCAGATATCATGATTGGCCGCGAAAAGCAGCTTTACGAACACGCCGAG GGCTGGACTGACTGGAGAGAATTCAAGATTGTGAACAAAGTCAAAGAATCCGAGGAAATCACATCCTTCTATCTC GCCCCTGTCGATGAAAAACCACTGCCGGCCTTCCAGCCCGGCCAGTACATTTCCATCCAAACCTACGTCCCGGCT CTCAAGCACTTGCAGGCCAGACAGTACTCTCTCAGCGACCAGCCGAAGCCGGACTACTATCGCATCAGTGTGAAA AGAGAACTGGGCCTCGACCCAGCCGCTCCAGGTGCCGCCGCTCACCCGGGTTACATCTCAAATCTGCTACACGAT ACAGTCAACATCGGCGACAAGCTCAATGTCTCCCATCCCTACGGTGACTTTTTCCTTCCCCCTGTCGAGTCGGAA GCAGGCAACCCAATCGTGTTGATCTCCGCCGGTGTGGGTCTAACACCACTGACGTCGATGCTGAACACATTGATT TCCAAATCACCCGCAACGCGCAAGCTGCATTTCATTCATGGCGCACGTTCATCACGCGTGCGTGCTTTCAAGTTG CACATCTCCGAGCTTCCAAACGAATTCCCCTCCATTCGAACCACATCCTACACGAGTCATCCTTCCGAGGGAGAG GTGGAGGGCGTGGACTACGACCATGCCGGGCGGGTGGACTTGACTAAGTTGAAGGATCAGGACTTGTTCCTGGAT GATGCCAAGACGGATTACTATATCTGTGGACCCGGAAAGTTCATGATCGATATGGAGTCGAGTCTCAAGGCCAGG GGTGTGAGTGCCGATCGCATCAAGATGGAATTGTTCGGAACGGGAGGTATTCATTGA |