© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2493.t1 |
| Gene name | |
| Location | scaffold_03:179185..180220 |
| Strand | - |
| Gene length (bp) | 1035 |
| Transcript length (bp) | 924 |
| Coding sequence length (bp) | 924 |
| Protein length (aa) | 308 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00230 | MIP | Major intrinsic protein | 2.0E-45 | 42 | 254 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015267 | channel activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 59 | 22 |
| 2 | 95 | 117 | 22 |
| 3 | 124 | 146 | 22 |
| 4 | 166 | 186 | 20 |
| 5 | 193 | 215 | 22 |
| 6 | 235 | 257 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2493.t1 MLFRKRHSTEASTLNGTSGSSEQGQLPMLRLPDKLRYNLLCMLGEFVGTFMFLFFSFAGTQVSNTPMPPPGSPPN TSNLLYSALSFGFALTVNVWAFFRVTGGLFNPAVTLALCLSGGMPPLRGLYVFPAQLVAGIAAAGVVSALFPGPL NCATRLGGGASISQGLFIEMFLTAQLVFVIIMLAVVKHKSTYLAPVGIGLAFFVAELIGDYYTGGSLNPARSLGP DVINRSFPGYHWIYWVGPLLGSLLASAFYRLLCMVRWEMINPGQDYNEEDAARKESLIGSDSTINADAPPTSRRD NGFDEHV* |
| Coding | >Pro_DTO377G3_2|g2493.t1 ATGTTGTTCAGGAAACGCCACTCAACCGAAGCCTCGACGCTCAATGGGACATCCGGTTCCAGTGAACAGGGCCAG CTGCCCATGCTGCGGCTCCCAGACAAGCTGCGGTACAACTTGCTTTGCATGCTGGGCGAGTTCGTGGGGACTTTC ATGTTTCTCTTCTTCTCTTTTGCGGGTACACAGGTGTCCAATACCCCGATGCCGCCACCTGGCTCCCCGCCGAAT ACTTCCAATTTGCTGTATTCAGCGCTTTCTTTTGGGTTCGCTTTGACCGTCAATGTCTGGGCCTTTTTCCGAGTC ACGGGTGGTCTCTTCAACCCGGCGGTTACTCTTGCTCTCTGTCTGAGTGGCGGCATGCCCCCTCTCCGGGGATTG TATGTATTCCCTGCGCAACTGGTCGCCGGAATTGCTGCGGCGGGCGTGGTGAGTGCCCTATTCCCGGGCCCGCTC AACTGCGCGACACGACTCGGCGGTGGCGCATCCATCTCACAAGGACTCTTCATTGAGATGTTTTTGACAGCGCAG CTTGTGTTTGTCATTATCATGTTGGCGGTGGTGAAGCATAAGTCCACCTATCTAGCTCCAGTAGGAATTGGTCTG GCTTTCTTTGTTGCAGAACTGATTGGTGATTACTACACCGGAGGATCTCTCAACCCTGCTCGCTCCCTCGGACCG GATGTAATCAACCGCTCATTTCCGGGGTACCACTGGATCTATTGGGTCGGTCCTCTGCTCGGATCCCTTCTTGCC TCTGCATTCTACCGACTCCTTTGTATGGTGCGCTGGGAGATGATCAATCCTGGTCAGGATTATAACGAGGAAGAT GCGGCCAGAAAGGAGTCGTTGATTGGTTCAGATAGTACCATCAACGCCGATGCCCCTCCAACATCTAGAAGAGAT AATGGGTTTGATGAGCATGTCTAG |
| Transcript | >Pro_DTO377G3_2|g2493.t1 ATGTTGTTCAGGAAACGCCACTCAACCGAAGCCTCGACGCTCAATGGGACATCCGGTTCCAGTGAACAGGGCCAG CTGCCCATGCTGCGGCTCCCAGACAAGCTGCGGTACAACTTGCTTTGCATGCTGGGCGAGTTCGTGGGGACTTTC ATGTTTCTCTTCTTCTCTTTTGCGGGTACACAGGTGTCCAATACCCCGATGCCGCCACCTGGCTCCCCGCCGAAT ACTTCCAATTTGCTGTATTCAGCGCTTTCTTTTGGGTTCGCTTTGACCGTCAATGTCTGGGCCTTTTTCCGAGTC ACGGGTGGTCTCTTCAACCCGGCGGTTACTCTTGCTCTCTGTCTGAGTGGCGGCATGCCCCCTCTCCGGGGATTG TATGTATTCCCTGCGCAACTGGTCGCCGGAATTGCTGCGGCGGGCGTGGTGAGTGCCCTATTCCCGGGCCCGCTC AACTGCGCGACACGACTCGGCGGTGGCGCATCCATCTCACAAGGACTCTTCATTGAGATGTTTTTGACAGCGCAG CTTGTGTTTGTCATTATCATGTTGGCGGTGGTGAAGCATAAGTCCACCTATCTAGCTCCAGTAGGAATTGGTCTG GCTTTCTTTGTTGCAGAACTGATTGGTGATTACTACACCGGAGGATCTCTCAACCCTGCTCGCTCCCTCGGACCG GATGTAATCAACCGCTCATTTCCGGGGTACCACTGGATCTATTGGGTCGGTCCTCTGCTCGGATCCCTTCTTGCC TCTGCATTCTACCGACTCCTTTGTATGGTGCGCTGGGAGATGATCAATCCTGGTCAGGATTATAACGAGGAAGAT GCGGCCAGAAAGGAGTCGTTGATTGGTTCAGATAGTACCATCAACGCCGATGCCCCTCCAACATCTAGAAGAGAT AATGGGTTTGATGAGCATGTCTAG |
| Gene | >Pro_DTO377G3_2|g2493.t1 ATGTTGTTCAGGAAACGCCACTCAACCGAAGCCTCGACGCTCAATGGGACATCCGGTTCCAGTGAACAGGGCCAG CTGCCCATGCTGCGGCTCCCAGACAAGCTGCGGTACAACTTGCTTTGCATGCTGGGCGAGTTCGTGGGGACTTTC ATGTTTCTCTTCTTCTCTTTTGCGGGTACACAGGTGTCCAATACCCCGATGCCGCCACCTGGCTCCCCGCCGAAT ACTTCCAATTTGCTGTATTCAGCGCTTTCTTTTGGGTTCGCTTTGACCGTCAATGTCTGGGCCTTTTTCCGAGTC ACGGGTGGTCTCTTCAACCCGGCGGTATGGTCATCACCATCCAGGAATGAGAAGATTTGTAGCTGACATTCACCA GGTTACTCTTGCTCTCTGTCTGAGTGGCGGCATGCCCCCTCTCCGGGGATTGTATGTATTCCCTGCGCAACTGGT CGCCGGAATTGCTGCGGCGGGCGTGGTGAGTGCCCTATTCCCGGGCCCGCTCAACTGCGCGACACGACTCGGCGG TGGCGCATCCATCTCACAAGGACTCTTCATTGAGATGTTTTTGACAGCGCAGCTTGTGTTTGTCATTATCATGTT GGCGGTGGTGAAGCATAAGTCCACCTATCTAGCTCCAGTAGGAATTGGTCTGGCTTTCTTTGTTGCAGAACTGAT TGGTAAGTGACGGTCATTATCGGATTACTCCACAACGTCCTATGCTGATCCTTCACACTAGGTGATTACTACACC GGAGGATCTCTCAACCCTGCTCGCTCCCTCGGACCGGATGTAATCAACCGCTCATTTCCGGGGTACCACTGGATC TATTGGGTCGGTCCTCTGCTCGGATCCCTTCTTGCCTCTGCATTCTACCGACTCCTTTGTATGGTGCGCTGGGAG ATGATCAATCCTGGTCAGGATTATAACGAGGAAGATGCGGCCAGAAAGGAGTCGTTGATTGGTTCAGATAGTACC ATCAACGCCGATGCCCCTCCAACATCTAGAAGAGATAATGGGTTTGATGAGCATGTCTAG |