© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2492.t1 |
| Gene name | |
| Location | scaffold_03:176394..177057 |
| Strand | + |
| Gene length (bp) | 663 |
| Transcript length (bp) | 663 |
| Coding sequence length (bp) | 663 |
| Protein length (aa) | 221 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 15.03 | 5.02 | 25.05 |
| 5d_25C | Five days - 25 degrees Celsius | 21.46 | 8.16 | 34.76 |
| 7d_25C | Seven days - 25 degrees Celsius | 20.92 | 7.92 | 33.93 |
| 10d_25C | Ten days - 25 degrees Celsius | 28.38 | 11.87 | 44.90 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.29 | 6.38 | 30.21 |
| 7d_30C | Seven days - 30 degrees Celsius | 51.45 | 24.99 | 77.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.378459 | no |
| 3d_25C | 7d_25C | 0.415014 | no |
| 3d_25C | 7d_15C | 0.681356 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.066809 | no |
| 5d_25C | 7d_25C | 0.964001 | no |
| 5d_25C | 7d_15C | 0.729526 | no |
| 5d_25C | 7d_30C | 0.001804 | yes |
| 5d_25C | 10d_25C | 0.455884 | no |
| 7d_25C | 7d_15C | 0.775130 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.410090 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.209917 | no |
| 7d_30C | 10d_25C | 0.040599 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2492.t1 MKFTLISSALFLATTAMASPDGVDVNSIVSDVTGVVSTVVDGGQSVGSDVVSIATSIAEAASTGGAAAISSIKSE ATSIAEAVSTGGAAAASSIKSEASAVATDASSIGSEITSRVATAISAQTTLTDSAGSATATESTTLTSAVSTTSS DSSSADSSSGSSSTDSSSGSSSTESSSGSSSTASPSSSSSVSDNAAFARPTAVGAVAAGMAGVLGVMIAL* |
| Coding | >Pro_DTO377G3_2|g2492.t1 ATGAAGTTCACTCTGATCTCCTCCGCCCTCTTCCTGGCCACCACTGCCATGGCTTCCCCAGACGGTGTTGACGTG AACTCTATCGTCTCCGATGTCACAGGCGTCGTCTCAACTGTCGTCGACGGTGGCCAATCCGTCGGATCCGATGTC GTCTCAATAGCCACCTCTATCGCCGAGGCCGCGAGCACCGGCGGTGCCGCTGCCATCTCATCCATCAAAAGCGAG GCGACCTCTATCGCCGAGGCCGTGAGCACCGGCGGTGCCGCTGCCGCCTCATCCATCAAGAGTGAGGCTTCTGCC GTCGCTACCGATGCTAGCTCCATCGGCTCTGAGATCACCAGCCGGGTTGCCACCGCCATTTCTGCTCAGACTACT CTTACCGACTCCGCCGGCTCGGCCACCGCTACCGAGTCCACTACCCTGACCAGCGCAGTGTCCACCACATCTTCC GACTCATCCTCCGCTGATTCTTCTTCCGGCTCCTCCTCCACTGATTCTTCTTCCGGCTCTTCGTCTACTGAGTCT TCTTCCGGCTCTTCCTCCACCGCGTCTCCGTCTAGCTCTTCCTCTGTCTCTGACAATGCGGCCTTCGCTCGTCCC ACTGCTGTCGGCGCTGTTGCTGCTGGTATGGCCGGTGTCCTTGGTGTCATGATTGCACTGTAA |
| Transcript | >Pro_DTO377G3_2|g2492.t1 ATGAAGTTCACTCTGATCTCCTCCGCCCTCTTCCTGGCCACCACTGCCATGGCTTCCCCAGACGGTGTTGACGTG AACTCTATCGTCTCCGATGTCACAGGCGTCGTCTCAACTGTCGTCGACGGTGGCCAATCCGTCGGATCCGATGTC GTCTCAATAGCCACCTCTATCGCCGAGGCCGCGAGCACCGGCGGTGCCGCTGCCATCTCATCCATCAAAAGCGAG GCGACCTCTATCGCCGAGGCCGTGAGCACCGGCGGTGCCGCTGCCGCCTCATCCATCAAGAGTGAGGCTTCTGCC GTCGCTACCGATGCTAGCTCCATCGGCTCTGAGATCACCAGCCGGGTTGCCACCGCCATTTCTGCTCAGACTACT CTTACCGACTCCGCCGGCTCGGCCACCGCTACCGAGTCCACTACCCTGACCAGCGCAGTGTCCACCACATCTTCC GACTCATCCTCCGCTGATTCTTCTTCCGGCTCCTCCTCCACTGATTCTTCTTCCGGCTCTTCGTCTACTGAGTCT TCTTCCGGCTCTTCCTCCACCGCGTCTCCGTCTAGCTCTTCCTCTGTCTCTGACAATGCGGCCTTCGCTCGTCCC ACTGCTGTCGGCGCTGTTGCTGCTGGTATGGCCGGTGTCCTTGGTGTCATGATTGCACTGTAA |
| Gene | >Pro_DTO377G3_2|g2492.t1 ATGAAGTTCACTCTGATCTCCTCCGCCCTCTTCCTGGCCACCACTGCCATGGCTTCCCCAGACGGTGTTGACGTG AACTCTATCGTCTCCGATGTCACAGGCGTCGTCTCAACTGTCGTCGACGGTGGCCAATCCGTCGGATCCGATGTC GTCTCAATAGCCACCTCTATCGCCGAGGCCGCGAGCACCGGCGGTGCCGCTGCCATCTCATCCATCAAAAGCGAG GCGACCTCTATCGCCGAGGCCGTGAGCACCGGCGGTGCCGCTGCCGCCTCATCCATCAAGAGTGAGGCTTCTGCC GTCGCTACCGATGCTAGCTCCATCGGCTCTGAGATCACCAGCCGGGTTGCCACCGCCATTTCTGCTCAGACTACT CTTACCGACTCCGCCGGCTCGGCCACCGCTACCGAGTCCACTACCCTGACCAGCGCAGTGTCCACCACATCTTCC GACTCATCCTCCGCTGATTCTTCTTCCGGCTCCTCCTCCACTGATTCTTCTTCCGGCTCTTCGTCTACTGAGTCT TCTTCCGGCTCTTCCTCCACCGCGTCTCCGTCTAGCTCTTCCTCTGTCTCTGACAATGCGGCCTTCGCTCGTCCC ACTGCTGTCGGCGCTGTTGCTGCTGGTATGGCCGGTGTCCTTGGTGTCATGATTGCACTGTAA |