© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2490.t1 |
| Gene name | |
| Location | scaffold_03:167968..170464 |
| Strand | - |
| Gene length (bp) | 2496 |
| Transcript length (bp) | 2496 |
| Coding sequence length (bp) | 2496 |
| Protein length (aa) | 832 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06738 | ThrE | Putative threonine/serine exporter | 2.4E-62 | 388 | 638 |
| PF06738 | ThrE | Putative threonine/serine exporter | 2.1E-06 | 668 | 759 |
| PF12821 | ThrE_2 | Threonine/Serine exporter, ThrE | 2.8E-13 | 668 | 816 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 497 | 516 | 19 |
| 2 | 523 | 545 | 22 |
| 3 | 584 | 606 | 22 |
| 4 | 619 | 641 | 22 |
| 5 | 661 | 680 | 19 |
| 6 | 687 | 704 | 17 |
| 7 | 714 | 731 | 17 |
| 8 | 738 | 760 | 22 |
| 9 | 798 | 820 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.51 | 0.00 | 1.03 |
| 5d_25C | Five days - 25 degrees Celsius | 0.31 | 0.00 | 0.67 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.33 | 0.00 | 0.69 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.55 | 0.01 | 1.09 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.26 | 0.00 | 0.58 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.33 | 0.00 | 0.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2490.t1 MSDASISSFNDDSDPDNTTSSEVWQDAPQTSPQEKESSPHIRFRSNAGFIQEAKHDEPPKVFREEWDLAHHEGLP HRPTMPYSHESEDIADTPQRDREPQSSETDSESGVQRIDQNKRPGGEKKEDEKKEHETSEQQSTLEKWRTATRNF RRKASEFGDRLGRPQAEGDDLTSGRYHADWATGGAPPLSDVTDDKHKSVEAKQRDQKGTSSEAHRLVRDLTQDHS QKRRKGRGKPYPHPDNEFKDEENETGADASLRYRSGGGGILSQLIKLQGGQQQGAGGQSRTSTDSSSSAESAPSG APTPKPKKQKPVKWYKKPKNTSNSTLIGGGADSFSGASTPVSSEILSQASRRRDKEGGGGGGGGNRNMRLEDEIR VTVHIAEIICRQRYIMQLCKALMLFGAPTHRLEEYMQMTAKVLEVDSQYLYLPGCMIMSFDDPSTRTTEVKMVRV AQGVDLARLSDTHLIYKNVIHDVIGIEEAIQELDAVIKKKPIYHKFIVILVYGLATATVGPFAFSARPIDMPIIF LNGILVGLMQHVAAPRSVLYSNVFEVTSTVVTSFLARAFGSISLGVVNGKPQYLFCFSAIAQSSIALILPGFLVL CSSLELQSHQIIAGSIRMVYALLFSLFIGYGITVGTTIYGLMDNHAVSDTSCPDKGAFKNPYVQRFPFVAIQTVW LLIINQGKWKQLPPMIIIAMAGYISNYFSTKRLGSNSQVANTVGAFVIGIMGNLYSRLWHGHAATAILPGIFILV PSGLAATGSLISGVQSADEIRQSVGSHGSSSSAPGAGLQSNSIFSLGFGMIQVAIGITIGLFISALVVYPYGKAR SGLFSF* |
| Coding | >Pro_DTO377G3_2|g2490.t1 ATGTCGGACGCATCCATCAGCAGCTTCAATGATGACTCGGACCCAGACAATACAACCTCGTCCGAAGTTTGGCAG GATGCGCCCCAAACCAGTCCACAAGAGAAAGAGTCATCACCCCATATTCGATTTCGATCAAATGCGGGTTTCATA CAGGAGGCCAAGCATGACGAACCGCCAAAAGTTTTTCGCGAAGAATGGGATTTGGCTCACCATGAAGGGCTGCCT CATCGGCCGACAATGCCATACTCCCATGAGTCTGAGGATATTGCCGATACACCACAGCGAGATCGTGAGCCACAG TCGAGTGAGACGGACAGCGAGTCAGGTGTCCAAAGGATAGACCAGAACAAGCGACCGGGAGGTGAGAAGAAGGAA GACGAGAAGAAGGAACATGAGACTTCTGAACAGCAATCCACACTGGAGAAATGGCGAACTGCGACCAGGAATTTC AGACGGAAAGCATCAGAGTTCGGTGACCGTCTGGGTCGCCCACAGGCCGAGGGAGACGACTTAACATCCGGGAGA TATCACGCGGACTGGGCGACCGGTGGTGCACCTCCACTCTCTGATGTGACAGATGACAAGCACAAAAGTGTGGAG GCGAAGCAGCGCGACCAGAAAGGGACTAGCTCGGAAGCCCATCGTCTAGTGCGAGATCTGACGCAAGACCATTCC CAAAAACGCCGCAAAGGCCGTGGGAAACCTTATCCTCACCCCGACAACGAATTTAAAGACGAAGAGAATGAGACA GGAGCAGATGCGAGCTTGAGATATCGCTCTGGCGGCGGCGGGATCCTGTCGCAGTTGATCAAACTGCAGGGTGGT CAGCAACAAGGTGCTGGAGGCCAGTCTCGAACATCAACTGACTCATCTAGCAGCGCAGAATCGGCCCCCAGCGGG GCCCCAACACCAAAACCTAAGAAGCAAAAGCCAGTGAAATGGTACAAAAAGCCCAAGAATACGTCGAACTCGACC TTGATTGGTGGGGGCGCAGATAGTTTCAGTGGTGCAAGCACTCCTGTTTCAAGCGAAATCCTATCGCAAGCCTCG AGGCGCCGTGACAAGGAGGGTGGCGGTGGCGGCGGTGGTGGAAATCGCAATATGCGGCTTGAGGATGAGATTCGA GTGACAGTGCACATTGCAGAAATTATCTGTCGGCAGCGGTATATCATGCAGCTCTGCAAAGCATTGATGTTATTT GGTGCTCCCACACACAGGCTTGAAGAGTACATGCAGATGACCGCAAAGGTATTGGAGGTTGATAGCCAATACCTG TATCTGCCAGGCTGCATGATAATGTCGTTCGACGATCCATCTACCCGCACGACAGAGGTGAAGATGGTTCGAGTA GCCCAGGGAGTTGATTTAGCTCGCCTATCGGACACACATCTCATCTACAAGAATGTGATCCACGATGTGATCGGC ATTGAAGAAGCAATTCAGGAACTCGATGCGGTCATCAAGAAAAAGCCCATATATCACAAGTTCATCGTCATCTTG GTGTACGGGTTGGCCACTGCAACAGTCGGGCCTTTCGCTTTTAGTGCCAGGCCGATTGACATGCCGATCATTTTT CTCAATGGTATACTTGTCGGTTTAATGCAACACGTCGCCGCGCCTCGTTCCGTGTTGTATTCAAATGTCTTTGAA GTGACATCGACAGTGGTGACGTCCTTCCTCGCCCGCGCTTTCGGTAGTATCTCCCTTGGAGTCGTGAATGGCAAG CCACAATACCTCTTTTGCTTTTCCGCCATCGCGCAATCATCGATTGCATTGATATTGCCAGGATTCCTTGTTCTT TGTAGTAGCTTGGAACTTCAATCCCATCAGATCATCGCTGGCTCGATTCGGATGGTCTATGCTCTCCTCTTCTCG TTGTTTATTGGATATGGAATTACCGTTGGCACAACCATCTACGGTCTGATGGACAACCACGCGGTCTCCGACACC TCCTGCCCAGACAAGGGAGCCTTTAAGAATCCATATGTTCAACGTTTCCCTTTCGTTGCAATCCAGACAGTCTGG CTTTTGATCATCAACCAAGGAAAATGGAAACAGCTTCCACCTATGATCATCATCGCAATGGCGGGCTACATTAGC AACTACTTCAGCACGAAGAGACTGGGATCAAACTCCCAGGTAGCGAATACAGTCGGCGCGTTTGTCATCGGCATC ATGGGAAATCTGTACAGTCGGCTCTGGCATGGCCATGCCGCGACCGCTATTCTGCCTGGAATTTTCATTCTGGTT CCATCTGGACTTGCTGCGACGGGATCTCTGATCTCGGGTGTACAGTCCGCGGATGAAATTCGTCAAAGCGTCGGG TCTCATGGTAGCAGTAGTTCAGCGCCCGGCGCTGGCTTGCAATCCAATTCTATATTCAGTCTAGGGTTTGGCATG ATCCAGGTGGCTATTGGCATTACGATTGGTTTGTTCATTTCCGCACTGGTGGTTTATCCATACGGCAAGGCCCGG AGCGGACTATTTAGTTTCTAG |
| Transcript | >Pro_DTO377G3_2|g2490.t1 ATGTCGGACGCATCCATCAGCAGCTTCAATGATGACTCGGACCCAGACAATACAACCTCGTCCGAAGTTTGGCAG GATGCGCCCCAAACCAGTCCACAAGAGAAAGAGTCATCACCCCATATTCGATTTCGATCAAATGCGGGTTTCATA CAGGAGGCCAAGCATGACGAACCGCCAAAAGTTTTTCGCGAAGAATGGGATTTGGCTCACCATGAAGGGCTGCCT CATCGGCCGACAATGCCATACTCCCATGAGTCTGAGGATATTGCCGATACACCACAGCGAGATCGTGAGCCACAG TCGAGTGAGACGGACAGCGAGTCAGGTGTCCAAAGGATAGACCAGAACAAGCGACCGGGAGGTGAGAAGAAGGAA GACGAGAAGAAGGAACATGAGACTTCTGAACAGCAATCCACACTGGAGAAATGGCGAACTGCGACCAGGAATTTC AGACGGAAAGCATCAGAGTTCGGTGACCGTCTGGGTCGCCCACAGGCCGAGGGAGACGACTTAACATCCGGGAGA TATCACGCGGACTGGGCGACCGGTGGTGCACCTCCACTCTCTGATGTGACAGATGACAAGCACAAAAGTGTGGAG GCGAAGCAGCGCGACCAGAAAGGGACTAGCTCGGAAGCCCATCGTCTAGTGCGAGATCTGACGCAAGACCATTCC CAAAAACGCCGCAAAGGCCGTGGGAAACCTTATCCTCACCCCGACAACGAATTTAAAGACGAAGAGAATGAGACA GGAGCAGATGCGAGCTTGAGATATCGCTCTGGCGGCGGCGGGATCCTGTCGCAGTTGATCAAACTGCAGGGTGGT CAGCAACAAGGTGCTGGAGGCCAGTCTCGAACATCAACTGACTCATCTAGCAGCGCAGAATCGGCCCCCAGCGGG GCCCCAACACCAAAACCTAAGAAGCAAAAGCCAGTGAAATGGTACAAAAAGCCCAAGAATACGTCGAACTCGACC TTGATTGGTGGGGGCGCAGATAGTTTCAGTGGTGCAAGCACTCCTGTTTCAAGCGAAATCCTATCGCAAGCCTCG AGGCGCCGTGACAAGGAGGGTGGCGGTGGCGGCGGTGGTGGAAATCGCAATATGCGGCTTGAGGATGAGATTCGA GTGACAGTGCACATTGCAGAAATTATCTGTCGGCAGCGGTATATCATGCAGCTCTGCAAAGCATTGATGTTATTT GGTGCTCCCACACACAGGCTTGAAGAGTACATGCAGATGACCGCAAAGGTATTGGAGGTTGATAGCCAATACCTG TATCTGCCAGGCTGCATGATAATGTCGTTCGACGATCCATCTACCCGCACGACAGAGGTGAAGATGGTTCGAGTA GCCCAGGGAGTTGATTTAGCTCGCCTATCGGACACACATCTCATCTACAAGAATGTGATCCACGATGTGATCGGC ATTGAAGAAGCAATTCAGGAACTCGATGCGGTCATCAAGAAAAAGCCCATATATCACAAGTTCATCGTCATCTTG GTGTACGGGTTGGCCACTGCAACAGTCGGGCCTTTCGCTTTTAGTGCCAGGCCGATTGACATGCCGATCATTTTT CTCAATGGTATACTTGTCGGTTTAATGCAACACGTCGCCGCGCCTCGTTCCGTGTTGTATTCAAATGTCTTTGAA GTGACATCGACAGTGGTGACGTCCTTCCTCGCCCGCGCTTTCGGTAGTATCTCCCTTGGAGTCGTGAATGGCAAG CCACAATACCTCTTTTGCTTTTCCGCCATCGCGCAATCATCGATTGCATTGATATTGCCAGGATTCCTTGTTCTT TGTAGTAGCTTGGAACTTCAATCCCATCAGATCATCGCTGGCTCGATTCGGATGGTCTATGCTCTCCTCTTCTCG TTGTTTATTGGATATGGAATTACCGTTGGCACAACCATCTACGGTCTGATGGACAACCACGCGGTCTCCGACACC TCCTGCCCAGACAAGGGAGCCTTTAAGAATCCATATGTTCAACGTTTCCCTTTCGTTGCAATCCAGACAGTCTGG CTTTTGATCATCAACCAAGGAAAATGGAAACAGCTTCCACCTATGATCATCATCGCAATGGCGGGCTACATTAGC AACTACTTCAGCACGAAGAGACTGGGATCAAACTCCCAGGTAGCGAATACAGTCGGCGCGTTTGTCATCGGCATC ATGGGAAATCTGTACAGTCGGCTCTGGCATGGCCATGCCGCGACCGCTATTCTGCCTGGAATTTTCATTCTGGTT CCATCTGGACTTGCTGCGACGGGATCTCTGATCTCGGGTGTACAGTCCGCGGATGAAATTCGTCAAAGCGTCGGG TCTCATGGTAGCAGTAGTTCAGCGCCCGGCGCTGGCTTGCAATCCAATTCTATATTCAGTCTAGGGTTTGGCATG ATCCAGGTGGCTATTGGCATTACGATTGGTTTGTTCATTTCCGCACTGGTGGTTTATCCATACGGCAAGGCCCGG AGCGGACTATTTAGTTTCTAG |
| Gene | >Pro_DTO377G3_2|g2490.t1 ATGTCGGACGCATCCATCAGCAGCTTCAATGATGACTCGGACCCAGACAATACAACCTCGTCCGAAGTTTGGCAG GATGCGCCCCAAACCAGTCCACAAGAGAAAGAGTCATCACCCCATATTCGATTTCGATCAAATGCGGGTTTCATA CAGGAGGCCAAGCATGACGAACCGCCAAAAGTTTTTCGCGAAGAATGGGATTTGGCTCACCATGAAGGGCTGCCT CATCGGCCGACAATGCCATACTCCCATGAGTCTGAGGATATTGCCGATACACCACAGCGAGATCGTGAGCCACAG TCGAGTGAGACGGACAGCGAGTCAGGTGTCCAAAGGATAGACCAGAACAAGCGACCGGGAGGTGAGAAGAAGGAA GACGAGAAGAAGGAACATGAGACTTCTGAACAGCAATCCACACTGGAGAAATGGCGAACTGCGACCAGGAATTTC AGACGGAAAGCATCAGAGTTCGGTGACCGTCTGGGTCGCCCACAGGCCGAGGGAGACGACTTAACATCCGGGAGA TATCACGCGGACTGGGCGACCGGTGGTGCACCTCCACTCTCTGATGTGACAGATGACAAGCACAAAAGTGTGGAG GCGAAGCAGCGCGACCAGAAAGGGACTAGCTCGGAAGCCCATCGTCTAGTGCGAGATCTGACGCAAGACCATTCC CAAAAACGCCGCAAAGGCCGTGGGAAACCTTATCCTCACCCCGACAACGAATTTAAAGACGAAGAGAATGAGACA GGAGCAGATGCGAGCTTGAGATATCGCTCTGGCGGCGGCGGGATCCTGTCGCAGTTGATCAAACTGCAGGGTGGT CAGCAACAAGGTGCTGGAGGCCAGTCTCGAACATCAACTGACTCATCTAGCAGCGCAGAATCGGCCCCCAGCGGG GCCCCAACACCAAAACCTAAGAAGCAAAAGCCAGTGAAATGGTACAAAAAGCCCAAGAATACGTCGAACTCGACC TTGATTGGTGGGGGCGCAGATAGTTTCAGTGGTGCAAGCACTCCTGTTTCAAGCGAAATCCTATCGCAAGCCTCG AGGCGCCGTGACAAGGAGGGTGGCGGTGGCGGCGGTGGTGGAAATCGCAATATGCGGCTTGAGGATGAGATTCGA GTGACAGTGCACATTGCAGAAATTATCTGTCGGCAGCGGTATATCATGCAGCTCTGCAAAGCATTGATGTTATTT GGTGCTCCCACACACAGGCTTGAAGAGTACATGCAGATGACCGCAAAGGTATTGGAGGTTGATAGCCAATACCTG TATCTGCCAGGCTGCATGATAATGTCGTTCGACGATCCATCTACCCGCACGACAGAGGTGAAGATGGTTCGAGTA GCCCAGGGAGTTGATTTAGCTCGCCTATCGGACACACATCTCATCTACAAGAATGTGATCCACGATGTGATCGGC ATTGAAGAAGCAATTCAGGAACTCGATGCGGTCATCAAGAAAAAGCCCATATATCACAAGTTCATCGTCATCTTG GTGTACGGGTTGGCCACTGCAACAGTCGGGCCTTTCGCTTTTAGTGCCAGGCCGATTGACATGCCGATCATTTTT CTCAATGGTATACTTGTCGGTTTAATGCAACACGTCGCCGCGCCTCGTTCCGTGTTGTATTCAAATGTCTTTGAA GTGACATCGACAGTGGTGACGTCCTTCCTCGCCCGCGCTTTCGGTAGTATCTCCCTTGGAGTCGTGAATGGCAAG CCACAATACCTCTTTTGCTTTTCCGCCATCGCGCAATCATCGATTGCATTGATATTGCCAGGATTCCTTGTTCTT TGTAGTAGCTTGGAACTTCAATCCCATCAGATCATCGCTGGCTCGATTCGGATGGTCTATGCTCTCCTCTTCTCG TTGTTTATTGGATATGGAATTACCGTTGGCACAACCATCTACGGTCTGATGGACAACCACGCGGTCTCCGACACC TCCTGCCCAGACAAGGGAGCCTTTAAGAATCCATATGTTCAACGTTTCCCTTTCGTTGCAATCCAGACAGTCTGG CTTTTGATCATCAACCAAGGAAAATGGAAACAGCTTCCACCTATGATCATCATCGCAATGGCGGGCTACATTAGC AACTACTTCAGCACGAAGAGACTGGGATCAAACTCCCAGGTAGCGAATACAGTCGGCGCGTTTGTCATCGGCATC ATGGGAAATCTGTACAGTCGGCTCTGGCATGGCCATGCCGCGACCGCTATTCTGCCTGGAATTTTCATTCTGGTT CCATCTGGACTTGCTGCGACGGGATCTCTGATCTCGGGTGTACAGTCCGCGGATGAAATTCGTCAAAGCGTCGGG TCTCATGGTAGCAGTAGTTCAGCGCCCGGCGCTGGCTTGCAATCCAATTCTATATTCAGTCTAGGGTTTGGCATG ATCCAGGTGGCTATTGGCATTACGATTGGTTTGTTCATTTCCGCACTGGTGGTTTATCCATACGGCAAGGCCCGG AGCGGACTATTTAGTTTCTAG |