© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2487.t1 |
| Gene name | |
| Location | scaffold_03:159081..160267 |
| Strand | - |
| Gene length (bp) | 1186 |
| Transcript length (bp) | 1119 |
| Coding sequence length (bp) | 1119 |
| Protein length (aa) | 373 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 1.9E-39 | 63 | 363 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 307 | 329 | 22 |
| 2 | 344 | 366 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 6.13 | 1.86 | 10.40 |
| 5d_25C | Five days - 25 degrees Celsius | 4.35 | 1.10 | 7.61 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.92 | 0.96 | 6.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.08 | 1.02 | 7.14 |
| 7d_15C | Seven days - 15 degrees Celsius | 16.36 | 7.19 | 25.53 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.46 | 2.00 | 10.92 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.451808 | no |
| 3d_25C | 7d_25C | 0.292546 | no |
| 3d_25C | 7d_15C | 0.002297 | yes |
| 3d_25C | 7d_30C | 0.929718 | no |
| 3d_25C | 10d_25C | 0.347917 | no |
| 5d_25C | 7d_25C | 0.860802 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.368155 | no |
| 5d_25C | 10d_25C | 0.918592 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.226075 | no |
| 7d_25C | 10d_25C | 0.951233 | no |
| 7d_15C | 7d_30C | 0.002761 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.274852 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2487.t1 MHNKQEKQLEIDQPLPDRFSFFSSKTRQATASSTWDGLFPNENIDHIFQEKLKSRPDPNQPIWWIDICDATEQDV NAISQALSIHPLTAEDIAIREPREKVDVHKNYYLISFQTLVVNKVNERPGIPVSAALYILVFQYGVVTFSPSGCG HVARARERIRKMHDPTILTSNWVCYAMIDDIIDSFGPFVREVERESEAIEDQVFISRIDDAQALVPQIDSLRKKI THIIRCLSGKVDVLNGFVKRCQSPDKNPVFPDRDLLLYLGDVQDHLITTLSTLGHIDEIIGRSQANYLAQMSATN LRLSLTINSGLSKVTLLATIFVPCHLVTGLWGMNVPVPGQHASGLGWFFGILGSFAAFMVICIAAATKYKLL* |
| Coding | >Pro_DTO377G3_2|g2487.t1 ATGCACAACAAACAAGAAAAGCAGCTGGAAATCGACCAGCCACTGCCTGATCGGTTTAGCTTCTTTTCGTCAAAA ACCCGACAAGCGACCGCCTCGTCGACATGGGATGGTCTTTTCCCCAACGAAAACATTGACCATATCTTCCAGGAG AAGCTTAAAAGTCGCCCAGATCCCAACCAGCCAATCTGGTGGATTGACATATGCGACGCCACCGAACAAGATGTC AATGCCATCTCACAAGCTTTGTCTATCCATCCCCTGACGGCAGAGGATATTGCTATTCGTGAGCCCCGGGAGAAA GTCGACGTCCACAAGAACTACTACCTGATCTCGTTTCAGACCCTCGTGGTAAACAAGGTCAATGAGCGACCGGGA ATTCCCGTCTCGGCTGCATTATACATTCTTGTCTTCCAATATGGCGTGGTCACCTTCTCGCCTAGTGGTTGTGGG CATGTGGCTCGGGCGCGAGAGCGGATTCGCAAAATGCATGATCCCACTATTCTGACGAGTAACTGGGTTTGCTAT GCAATGATAGACGATATCATTGACAGCTTTGGGCCATTTGTCCGGGAGGTGGAGCGCGAGTCCGAAGCAATCGAG GATCAGGTGTTTATCAGTCGCATCGATGACGCTCAGGCTCTTGTTCCGCAGATTGACTCCCTCCGGAAGAAAATC ACTCACATAATCCGCTGCCTCAGCGGCAAGGTCGACGTGTTGAACGGATTCGTGAAGCGCTGCCAATCCCCCGAT AAGAACCCTGTTTTCCCTGACCGTGATCTACTTCTATATCTCGGCGATGTCCAGGACCATCTAATCACGACGTTG TCGACACTTGGGCACATCGATGAGATCATCGGTCGGTCCCAGGCGAATTATTTAGCCCAGATGAGCGCTACAAAT CTCCGGTTGAGTCTGACTATTAACTCTGGTTTGAGTAAGGTCACTCTTCTGGCTACGATCTTCGTGCCGTGCCAC CTGGTCACGGGCTTGTGGGGAATGAACGTTCCTGTCCCGGGACAGCATGCTAGTGGGCTAGGGTGGTTTTTTGGT ATCCTCGGTTCTTTTGCGGCATTCATGGTCATTTGCATCGCCGCGGCTACGAAGTACAAACTTTTGTAG |
| Transcript | >Pro_DTO377G3_2|g2487.t1 ATGCACAACAAACAAGAAAAGCAGCTGGAAATCGACCAGCCACTGCCTGATCGGTTTAGCTTCTTTTCGTCAAAA ACCCGACAAGCGACCGCCTCGTCGACATGGGATGGTCTTTTCCCCAACGAAAACATTGACCATATCTTCCAGGAG AAGCTTAAAAGTCGCCCAGATCCCAACCAGCCAATCTGGTGGATTGACATATGCGACGCCACCGAACAAGATGTC AATGCCATCTCACAAGCTTTGTCTATCCATCCCCTGACGGCAGAGGATATTGCTATTCGTGAGCCCCGGGAGAAA GTCGACGTCCACAAGAACTACTACCTGATCTCGTTTCAGACCCTCGTGGTAAACAAGGTCAATGAGCGACCGGGA ATTCCCGTCTCGGCTGCATTATACATTCTTGTCTTCCAATATGGCGTGGTCACCTTCTCGCCTAGTGGTTGTGGG CATGTGGCTCGGGCGCGAGAGCGGATTCGCAAAATGCATGATCCCACTATTCTGACGAGTAACTGGGTTTGCTAT GCAATGATAGACGATATCATTGACAGCTTTGGGCCATTTGTCCGGGAGGTGGAGCGCGAGTCCGAAGCAATCGAG GATCAGGTGTTTATCAGTCGCATCGATGACGCTCAGGCTCTTGTTCCGCAGATTGACTCCCTCCGGAAGAAAATC ACTCACATAATCCGCTGCCTCAGCGGCAAGGTCGACGTGTTGAACGGATTCGTGAAGCGCTGCCAATCCCCCGAT AAGAACCCTGTTTTCCCTGACCGTGATCTACTTCTATATCTCGGCGATGTCCAGGACCATCTAATCACGACGTTG TCGACACTTGGGCACATCGATGAGATCATCGGTCGGTCCCAGGCGAATTATTTAGCCCAGATGAGCGCTACAAAT CTCCGGTTGAGTCTGACTATTAACTCTGGTTTGAGTAAGGTCACTCTTCTGGCTACGATCTTCGTGCCGTGCCAC CTGGTCACGGGCTTGTGGGGAATGAACGTTCCTGTCCCGGGACAGCATGCTAGTGGGCTAGGGTGGTTTTTTGGT ATCCTCGGTTCTTTTGCGGCATTCATGGTCATTTGCATCGCCGCGGCTACGAAGTACAAACTTTTGTAG |
| Gene | >Pro_DTO377G3_2|g2487.t1 ATGCACAACAAACAAGAAAAGCAGCTGGAAATCGACCAGCCACTGCCTGATCGGTTTAGCTTCTTTTCGTCAAAA ACCCGACAAGCGACCGCCTCGTCGACATGGGATGGTCTTTTCCCCAACGAAAACATTGACCATATCTTCCAGGAG AAGCTTAAAAGTCGCCCAGATCCCAACCAGCCAATCTGGTGGATTGACATATGCGACGCCACCGAACAAGATGTC AATGCCATCTCACAAGCTTTGTCTATCCATCCCCTGACGGCAGAGGATATTGCTATTCGTGAGCCCCGGGAGAAA GTCGACGTCCACAAGAACTACTACCTGATCTCGTTTCAGACCCTCGTGGTAAACAAGGTCAATGAGCGACCGGGA ATTCCCGTCTCGGCTGCATTATACATTCTTGTCTTCCAATATGGCGTGGTCACCTTCTCGCCTAGTGGTTGTGGG CATGTGGCTCGGGCGCGAGAGCGGATTCGCAAAATGCATGATCCCACTATTCTGACGAGTAACTGGGTTTGCTAT GCAATGATGTGTGTTCAACCATTTTCCCGCTCAGCAACCCCCTTTTCAATGGATGCACGGCTAATTGATCTTCAG AGACGATATCATTGACAGCTTTGGGCCATTTGTCCGGGAGGTGGAGCGCGAGTCCGAAGCAATCGAGGATCAGGT GTTTATCAGTCGCATCGATGACGCTCAGGCTCTTGTTCCGCAGATTGACTCCCTCCGGAAGAAAATCACTCACAT AATCCGCTGCCTCAGCGGCAAGGTCGACGTGTTGAACGGATTCGTGAAGCGCTGCCAATCCCCCGATAAGAACCC TGTTTTCCCTGACCGTGATCTACTTCTATATCTCGGCGATGTCCAGGACCATCTAATCACGACGTTGTCGACACT TGGGCACATCGATGAGATCATCGGTCGGTCCCAGGCGAATTATTTAGCCCAGATGAGCGCTACAAATCTCCGGTT GAGTCTGACTATTAACTCTGGTTTGAGTAAGGTCACTCTTCTGGCTACGATCTTCGTGCCGTGCCACCTGGTCAC GGGCTTGTGGGGAATGAACGTTCCTGTCCCGGGACAGCATGCTAGTGGGCTAGGGTGGTTTTTTGGTATCCTCGG TTCTTTTGCGGCATTCATGGTCATTTGCATCGCCGCGGCTACGAAGTACAAACTTTTGTAG |