Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2480.t1
Gene name
Locationscaffold_03:146087..146534
Strand+
Gene length (bp)447
Transcript length (bp)390
Coding sequence length (bp)390
Protein length (aa) 130

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00545 Ribonuclease ribonuclease 2.0E-09 57 126

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0004521 endoribonuclease activity Yes
GO:0003824 catalytic activity No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:0016788 hydrolase activity, acting on ester bonds No
GO:0004519 endonuclease activity No
GO:0140098 catalytic activity, acting on RNA No
GO:0004518 nuclease activity No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No
GO:0016787 hydrolase activity No
GO:0004540 ribonuclease activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2480.t1
MQYTKLLALASVFISSAFAAPLDVEARACAATCGTVCYTSSAISAAQAAGYKLYSANDAVSSYPHEYHNYEGFSF
PVSGTYYEFPILSSGKVYTGSSPGADRVIFNSADKLAGVITHTGASGNNFVACT*
Coding >Pro_DTO377G3_2|g2480.t1
ATGCAATACACCAAGCTCCTGGCTTTGGCCTCCGTCTTCATATCCAGTGCCTTCGCTGCCCCGTTGGATGTGGAA
GCTCGCGCATGTGCCGCGACTTGCGGCACAGTCTGCTACACCAGCAGTGCCATCAGTGCCGCCCAGGCAGCGGGA
TACAAACTCTACAGCGCCAATGATGCTGTGTCCAGCTACCCTCACGAGTACCACAACTATGAAGGCTTCAGCTTT
CCCGTTTCAGGAACCTACTACGAGTTCCCCATTCTTAGCAGTGGCAAGGTCTATACTGGTAGCTCTCCTGGTGCG
GACCGTGTTATCTTCAACAGCGCCGACAAGCTAGCTGGTGTCATTACTCACACCGGTGCCAGCGGCAACAACTTT
GTGGCATGTACCTAA
Transcript >Pro_DTO377G3_2|g2480.t1
ATGCAATACACCAAGCTCCTGGCTTTGGCCTCCGTCTTCATATCCAGTGCCTTCGCTGCCCCGTTGGATGTGGAA
GCTCGCGCATGTGCCGCGACTTGCGGCACAGTCTGCTACACCAGCAGTGCCATCAGTGCCGCCCAGGCAGCGGGA
TACAAACTCTACAGCGCCAATGATGCTGTGTCCAGCTACCCTCACGAGTACCACAACTATGAAGGCTTCAGCTTT
CCCGTTTCAGGAACCTACTACGAGTTCCCCATTCTTAGCAGTGGCAAGGTCTATACTGGTAGCTCTCCTGGTGCG
GACCGTGTTATCTTCAACAGCGCCGACAAGCTAGCTGGTGTCATTACTCACACCGGTGCCAGCGGCAACAACTTT
GTGGCATGTACCTAA
Gene >Pro_DTO377G3_2|g2480.t1
ATGCAATACACCAAGGTAATACCCTCTTCCAGATCAATAGCATCAACCATCAGCTATTAACACAACTTTCAGCTC
CTGGCTTTGGCCTCCGTCTTCATATCCAGTGCCTTCGCTGCCCCGTTGGATGTGGAAGCTCGCGCATGTGCCGCG
ACTTGCGGCACAGTCTGCTACACCAGCAGTGCCATCAGTGCCGCCCAGGCAGCGGGATACAAACTCTACAGCGCC
AATGATGCTGTGTCCAGCTACCCTCACGAGTACCACAACTATGAAGGCTTCAGCTTTCCCGTTTCAGGAACCTAC
TACGAGTTCCCCATTCTTAGCAGTGGCAAGGTCTATACTGGTAGCTCTCCTGGTGCGGACCGTGTTATCTTCAAC
AGCGCCGACAAGCTAGCTGGTGTCATTACTCACACCGGTGCCAGCGGCAACAACTTTGTGGCATGTACCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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