© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2479.t1 |
| Gene name | |
| Location | scaffold_03:143149..145151 |
| Strand | + |
| Gene length (bp) | 2002 |
| Transcript length (bp) | 1611 |
| Coding sequence length (bp) | 1611 |
| Protein length (aa) | 537 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 2.1E-128 | 52 | 496 |
| PF13520 | AA_permease_2 | Amino acid permease | 1.7E-30 | 55 | 480 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 52 | 74 | 22 |
| 2 | 81 | 100 | 19 |
| 3 | 133 | 155 | 22 |
| 4 | 162 | 184 | 22 |
| 5 | 188 | 210 | 22 |
| 6 | 268 | 290 | 22 |
| 7 | 319 | 341 | 22 |
| 8 | 362 | 384 | 22 |
| 9 | 394 | 416 | 22 |
| 10 | 437 | 456 | 19 |
| 11 | 471 | 488 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2479.t1 MTDKTDVSAITYRGPVQDGTTKGFRSEINRSDEEIATDPMSAPLKRQLKSRHLQMIAIGGIIGPGLLVSSGNALH EGGPAGALISFSLVGIIVFFVMQSLGEMATLLPVTGSFTEYAERFIDDSLAFALGWAYWYLWVTVLANEYNAISL VIGYWTDAVPQWGWILIFWVMFLTLSNLGILAYGEMEFWLSLIKVLALIVFFILAIIISAGGIGPRAIGFEYWRA PGAFADSINGVAKTFVVAGTLVGVTAGESTNPRKAVPKAIRQVFWRILIFYVGTIFFIGMLIPWNDKRLLGTTSK TASSPLTISLQDAGILPAAHLINALIVISVISAGNSSLYVASRTLLFMSRNGKAPKFIGRTNRLGVPWVGLVFTN VFACIVFLEQSSSAGRVYSALITLSGVATFIIWSVIGVAHIRFRKALVAQGQDPSKLPYQALFYPWGTYLALAAN VFLVFFQGYTCFLNPFSSTDFVINYILLPVFVLFVVVYKFWNKTRVVRLEDMDIWTGRRELVDSEEPESSKKVAK WWSRIYSVVIG* |
| Coding | >Pro_DTO377G3_2|g2479.t1 ATGACGGACAAAACGGATGTCAGCGCCATAACATACAGAGGACCTGTTCAGGATGGCACTACGAAAGGCTTCCGA TCGGAGATAAACCGATCGGATGAAGAGATTGCAACAGATCCTATGTCTGCACCATTGAAGCGGCAGCTTAAGTCT AGGCATCTACAGATGATCGCTATTGGAGGCATTATCGGTCCTGGTCTGCTGGTGAGCTCGGGCAATGCACTACAT GAGGGTGGACCCGCAGGGGCTTTGATTAGTTTCTCGCTGGTGGGCATTATCGTCTTCTTCGTCATGCAATCGCTG GGTGAGATGGCCACGCTACTCCCCGTGACTGGATCGTTCACCGAGTATGCGGAGCGCTTTATTGACGACTCTCTT GCGTTTGCTCTGGGATGGGCATATTGGTACTTATGGGTAACTGTCCTTGCAAATGAATATAACGCCATATCGCTA GTAATTGGGTACTGGACAGATGCTGTTCCTCAATGGGGCTGGATCTTGATCTTCTGGGTGATGTTCCTTACCCTG TCAAATCTGGGAATTTTGGCCTATGGGGAGATGGAATTTTGGCTATCTCTTATCAAGGTGTTGGCGTTGATTGTC TTTTTCATTCTCGCAATTATCATCAGCGCAGGTGGCATTGGACCGCGCGCCATTGGATTTGAATATTGGCGTGCC CCGGGGGCATTCGCAGATTCAATCAATGGCGTTGCGAAAACCTTTGTTGTTGCGGGAACTTTGGTTGGTGTCACT GCTGGAGAATCGACGAATCCTCGAAAAGCAGTGCCTAAGGCTATCAGGCAGGTCTTTTGGCGTATCCTGATTTTC TACGTTGGTACCATCTTCTTCATTGGAATGCTCATCCCATGGAATGACAAAAGGTTGTTGGGCACAACGTCGAAG ACAGCCAGCTCCCCCTTGACAATCTCGTTACAGGATGCTGGGATCCTCCCAGCTGCCCACCTCATTAATGCTCTC ATTGTGATTAGTGTCATTTCTGCTGGAAATAGCTCGCTTTATGTGGCATCTAGAACGCTGCTTTTCATGTCTCGC AATGGAAAAGCGCCAAAATTCATTGGCCGGACAAATCGTCTCGGAGTTCCATGGGTTGGCTTAGTTTTCACCAAC GTCTTCGCATGCATTGTGTTTTTGGAACAGTCCTCTAGTGCTGGGAGAGTCTACTCGGCATTGATAACCCTTTCG GGGGTTGCTACCTTTATTATTTGGTCGGTAATCGGAGTTGCGCATATTCGATTTCGAAAAGCCCTGGTCGCGCAA GGCCAAGACCCATCAAAGCTCCCATACCAGGCTCTCTTTTACCCATGGGGAACCTACCTTGCGCTGGCAGCAAAT GTTTTCCTCGTTTTCTTTCAGGGGTACACCTGCTTCCTCAATCCCTTTAGCTCGACGGACTTTGTGATCAACTAT ATCCTGCTCCCTGTGTTTGTATTGTTTGTGGTTGTGTACAAGTTCTGGAATAAAACCCGTGTCGTCCGACTGGAG GATATGGACATCTGGACGGGGCGAAGGGAGCTCGTCGATTCGGAAGAGCCCGAGTCATCCAAAAAGGTTGCCAAG TGGTGGTCTCGCATATATTCCGTTGTTATAGGGTAG |
| Transcript | >Pro_DTO377G3_2|g2479.t1 ATGACGGACAAAACGGATGTCAGCGCCATAACATACAGAGGACCTGTTCAGGATGGCACTACGAAAGGCTTCCGA TCGGAGATAAACCGATCGGATGAAGAGATTGCAACAGATCCTATGTCTGCACCATTGAAGCGGCAGCTTAAGTCT AGGCATCTACAGATGATCGCTATTGGAGGCATTATCGGTCCTGGTCTGCTGGTGAGCTCGGGCAATGCACTACAT GAGGGTGGACCCGCAGGGGCTTTGATTAGTTTCTCGCTGGTGGGCATTATCGTCTTCTTCGTCATGCAATCGCTG GGTGAGATGGCCACGCTACTCCCCGTGACTGGATCGTTCACCGAGTATGCGGAGCGCTTTATTGACGACTCTCTT GCGTTTGCTCTGGGATGGGCATATTGGTACTTATGGGTAACTGTCCTTGCAAATGAATATAACGCCATATCGCTA GTAATTGGGTACTGGACAGATGCTGTTCCTCAATGGGGCTGGATCTTGATCTTCTGGGTGATGTTCCTTACCCTG TCAAATCTGGGAATTTTGGCCTATGGGGAGATGGAATTTTGGCTATCTCTTATCAAGGTGTTGGCGTTGATTGTC TTTTTCATTCTCGCAATTATCATCAGCGCAGGTGGCATTGGACCGCGCGCCATTGGATTTGAATATTGGCGTGCC CCGGGGGCATTCGCAGATTCAATCAATGGCGTTGCGAAAACCTTTGTTGTTGCGGGAACTTTGGTTGGTGTCACT GCTGGAGAATCGACGAATCCTCGAAAAGCAGTGCCTAAGGCTATCAGGCAGGTCTTTTGGCGTATCCTGATTTTC TACGTTGGTACCATCTTCTTCATTGGAATGCTCATCCCATGGAATGACAAAAGGTTGTTGGGCACAACGTCGAAG ACAGCCAGCTCCCCCTTGACAATCTCGTTACAGGATGCTGGGATCCTCCCAGCTGCCCACCTCATTAATGCTCTC ATTGTGATTAGTGTCATTTCTGCTGGAAATAGCTCGCTTTATGTGGCATCTAGAACGCTGCTTTTCATGTCTCGC AATGGAAAAGCGCCAAAATTCATTGGCCGGACAAATCGTCTCGGAGTTCCATGGGTTGGCTTAGTTTTCACCAAC GTCTTCGCATGCATTGTGTTTTTGGAACAGTCCTCTAGTGCTGGGAGAGTCTACTCGGCATTGATAACCCTTTCG GGGGTTGCTACCTTTATTATTTGGTCGGTAATCGGAGTTGCGCATATTCGATTTCGAAAAGCCCTGGTCGCGCAA GGCCAAGACCCATCAAAGCTCCCATACCAGGCTCTCTTTTACCCATGGGGAACCTACCTTGCGCTGGCAGCAAAT GTTTTCCTCGTTTTCTTTCAGGGGTACACCTGCTTCCTCAATCCCTTTAGCTCGACGGACTTTGTGATCAACTAT ATCCTGCTCCCTGTGTTTGTATTGTTTGTGGTTGTGTACAAGTTCTGGAATAAAACCCGTGTCGTCCGACTGGAG GATATGGACATCTGGACGGGGCGAAGGGAGCTCGTCGATTCGGAAGAGCCCGAGTCATCCAAAAAGGTTGCCAAG TGGTGGTCTCGCATATATTCCGTTGTTATAGGGTAG |
| Gene | >Pro_DTO377G3_2|g2479.t1 ATGACGGACAAAACGGATGTCAGCGCCATAACATACAGAGGACCTGTTCAGGATGGCACTACGAAAGGCTTCCGA TCGGAGATAAACCGATCGGATGAAGAGATTGCAACAGATCCTATGTCTGCACCATTGAAGCGGCAGCTTAAGTCT AGGCATCTACAGATGATCGCTATTGGAGGTGGGCTTGCACATTGTTTTACGTAGTTGGTGTTGACTAAAGTATTC TCAGGCATTATCGGTCCTGGTCTGCTGGTGAGCTCGGGCAATGCACTACATGAGGGTGGACCCGCAGGGGCTTTG ATTAGTTTCTCGCTGGTGGGCATTATCGTCTTCTTCGTCATGTAAGGGGTGTATTTCCTTGCCCTAAGAATGATT CTAATGGCTACAGGCAATCGCTGGGTGAGATGGCCACGCTACTCCCCGTGACTGGATCGTTCACCGAGTATGCGG AGCGCTTTATTGACGACTCTCTTGCGTTTGCTCTGGGATGGGCATATTGGTACTTATGGGTAACTGTACGGCATA CATTGGGAATTCGAGTATTATGGATCATCCCTTACTAACATGACACTCTAGGTCCTTGCAAATGAATATAACGCC ATATCGCTAGTAATTGGGTACTGGACAGATGCTGTTCCTCAATGGGGCTGGATCTTGATCTTCTGGGTGATGTTC CTTACCCTGTCAAATCTGGGAATTTTGGCCTATGGGGAGATGGAATTTTGGCTATCTCTGTACGTTTCCGCGTGC TTACGTTTGAAGCATGAAACTGACTAATGCAATACAGTATCAAGGTGTTGGCGTTGATTGTCTTTTTCATTCTCG CAATTATCATCAGCGCAGGTGGCATTGGACCGCGCGCCATTGGATTTGAATATTGGCGTGCCCCGGGGGCATTCG CAGATTCAATCAATGGCGTTGCGAAAACCTTTGTTGTTGCGGGAACTTTGTATGCTGGGACTGAAATGTATATTC CCCAATATCGAAGATGATAGAAAATGGCGAAAGCTGACAGTCAAATTAGGGTTGGTGTCACTGCTGGAGAATCGA CGAATCCTCGAAAAGCAGTGCCTAAGGCTATCAGGCAGGTCTTTTGGCGTATCCTGATTTTCTACGTTGGTGAGT TCACATAAAACAGAAGACCGAAGCATTACTGAACTATATCTAGGTACCATCTTCTTCATTGGAATGCTCATCCCA TGGAATGACAAAAGGTTGTTGGGCACAACGTCGAAGACAGCCAGCTCCCCCTTGACAATCTCGTTACAGGATGCT GGGATCCTCCCAGCTGCCCACCTCATTAATGCTCTCATTGTGATTAGTGTCATTTCTGCTGGAAATAGCTCGCTT TATGTGGCATCTAGAACGCTGCTTTTCATGTCTCGCAATGGAAAAGCGCCAAAATTCATTGGCCGGACAAATCGT CTCGGAGTTCCATGGGTTGGCTTAGTTTTCACCAACGTCTTCGCATGCATTGTGTTTTTGGAACAGTCCTCTAGT GCTGGGAGAGTCTACTCGGCATTGATAACCCTTTCGGGGGGTATGTTTGCCTTCCTTGCCCGTTCCCACCATTGT TCCCTGCTGACGAAGTATAGTTGCTACCTTTATTATTTGGTCGGTAATCGGAGTTGCGCATATTCGATTTCGAAA AGCCCTGGTCGCGCAAGGCCAAGACCCATCAAAGCTCCCATACCAGGCTCTCTTTTACCCATGGGGAACCTACCT TGCGCTGGCAGCAAATGTTTTCCTCGTTTTCTTTCAGGGGTACACCTGCTTCCTCAATCCCTTTAGCTCGACGGA CTTTGTGATCAACTATATCCTGCTCCCTGTGTTTGTATTGTTTGTGGTTGTGTACAAGTTCTGGAATAAAACCCG TGTCGTCCGACTGGAGGATATGGACATCTGGACGGGGCGAAGGGAGCTCGTCGATTCGGAAGAGCCCGAGTCATC CAAAAAGGTTGCCAAGTGGTGGTCTCGCATATATTCCGTTGTTATAGGGTAG |