© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g2471.t1 |
| Gene name | |
| Location | scaffold_03:119824..121502 |
| Strand | - |
| Gene length (bp) | 1678 |
| Transcript length (bp) | 1626 |
| Coding sequence length (bp) | 1626 |
| Protein length (aa) | 542 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.1E-104 | 18 | 468 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 8.6E-14 | 53 | 310 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.4E-10 | 289 | 460 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 39 | 19 |
| 2 | 59 | 78 | 19 |
| 3 | 88 | 107 | 19 |
| 4 | 148 | 170 | 22 |
| 5 | 180 | 202 | 22 |
| 6 | 273 | 295 | 22 |
| 7 | 310 | 332 | 22 |
| 8 | 339 | 359 | 20 |
| 9 | 369 | 391 | 22 |
| 10 | 404 | 426 | 22 |
| 11 | 430 | 452 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.13 | 4.89 | 17.37 |
| 5d_25C | Five days - 25 degrees Celsius | 3.53 | 0.95 | 6.11 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.68 | 2.81 | 12.54 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.93 | 0.47 | 7.39 |
| 7d_15C | Seven days - 15 degrees Celsius | 14.82 | 6.57 | 23.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.28 | 0.16 | 2.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.001278 | yes |
| 3d_25C | 7d_25C | 0.304365 | no |
| 3d_25C | 7d_15C | 0.416027 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.022435 | yes |
| 5d_25C | 7d_25C | 0.034575 | yes |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.026091 | yes |
| 5d_25C | 10d_25C | 0.873125 | no |
| 7d_25C | 7d_15C | 0.043772 | yes |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.148303 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.002761 | yes |
| 7d_30C | 10d_25C | 0.022165 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2471.t1 MAPSYAGMSGKPLSLTVSTIATMGFLLFGYDQGVMSGIIDCDAFGRFMPITRGDSTMQALVTAVYELGCLAGAMY ALFAGDKFGRRLMVIQGGYIMIIGVIIQICAIKGHGATAQFFVGRIVTGIGNGINTSTIPTYQAECSHSANRGLL ICIEGGIIAVGTMIAYWIDFGASYGPDDLVWRFPIGFQIFFGIIIVVGMYYMPESPRYLISKGKIQEGEYVLAAL NGHEIESHETQIQKKLVIESIEAAGVAAGAGYSDLLTGGKTQHLRRMLIGSSCQIAQQLSGCNAVIYYLPVLLKK SLGQTEFMSMLIGGINMIVYAIFATFSWFFIERIGRRKLFIGGMTGQMVSMIIVFACLIPDQTEASKGAVFGLFL YMSFFGASILPLPWLYPAEISPLRTRTKANAVSTCSNWLFNFTVVMITPVMLERISWGTYLFFAVMNFIFIPPMI LFYPETAGRSLEEIDLIFAKGYCENMSYVKAAKQLPKLTNEEIEAKAAEYGFESDRRRGDTENGGEKGSPRSTSS DGKQLFEEEENATTIS* |
| Coding | >Pro_DTO377G3_2|g2471.t1 ATGGCGCCGAGCTATGCCGGCATGTCCGGTAAGCCTCTGAGTTTGACGGTGTCGACCATCGCTACTATGGGCTTC CTGCTTTTCGGTTACGATCAGGGTGTCATGTCCGGCATTATTGATTGCGATGCCTTCGGCAGGTTCATGCCTATC ACCCGGGGCGACTCCACCATGCAGGCCTTGGTGACTGCTGTCTACGAGTTGGGCTGTCTGGCTGGTGCCATGTAT GCCTTGTTCGCTGGTGACAAGTTTGGCCGTCGTCTCATGGTTATCCAAGGTGGTTATATCATGATCATTGGTGTT ATCATTCAAATCTGTGCTATCAAGGGCCATGGAGCTACTGCCCAGTTCTTTGTCGGCCGTATCGTCACTGGCATT GGCAACGGAATAAATACTTCGACTATCCCGACCTACCAAGCCGAGTGCTCGCATTCCGCCAACCGTGGTCTTCTC ATCTGTATTGAGGGTGGTATCATCGCTGTTGGTACAATGATCGCCTACTGGATTGACTTTGGTGCCTCCTACGGC CCGGATGACCTCGTCTGGCGTTTCCCTATTGGCTTCCAGATTTTCTTCGGTATTATCATTGTCGTTGGCATGTAC TATATGCCCGAGTCACCTCGCTACCTCATTTCCAAGGGCAAAATACAGGAGGGTGAGTATGTGCTCGCTGCTCTC AATGGTCACGAAATCGAATCCCACGAGACCCAGATCCAGAAGAAGCTCGTTATCGAGTCCATTGAAGCTGCCGGT GTTGCTGCCGGTGCTGGTTACTCCGATCTCCTCACTGGTGGTAAGACCCAGCACCTGCGCCGTATGCTTATCGGT TCTTCGTGTCAAATCGCCCAACAGCTATCTGGTTGCAATGCTGTGATTTACTACCTACCTGTCCTCTTGAAGAAG TCCCTCGGCCAGACTGAGTTCATGTCCATGCTTATCGGTGGTATTAATATGATCGTCTACGCCATCTTCGCCACG TTCTCCTGGTTCTTCATCGAGAGGATTGGTCGCCGCAAGCTCTTCATCGGCGGTATGACAGGTCAGATGGTTTCT ATGATCATCGTCTTCGCTTGTTTGATCCCCGACCAGACCGAAGCTTCCAAAGGTGCTGTCTTTGGTCTGTTCCTC TATATGTCCTTCTTCGGTGCCTCGATTCTGCCCCTCCCCTGGTTGTACCCCGCCGAGATCTCGCCTCTCCGTACC CGTACCAAGGCCAATGCTGTCTCGACCTGCTCAAACTGGCTGTTCAACTTCACTGTTGTTATGATCACCCCGGTT ATGCTTGAGCGTATTTCCTGGGGTACCTACCTGTTCTTTGCCGTAATGAACTTCATCTTCATCCCCCCCATGATT CTCTTCTACCCCGAGACAGCTGGCCGCAGTCTGGAGGAGATTGATCTCATCTTTGCCAAGGGTTACTGCGAGAAC ATGAGCTATGTCAAGGCTGCCAAACAGCTGCCTAAGCTCACCAATGAGGAGATTGAGGCCAAGGCTGCTGAGTAT GGCTTTGAGTCTGACCGCCGCCGCGGCGATACCGAGAATGGCGGCGAAAAGGGCTCCCCTCGAAGCACCTCCAGC GATGGCAAGCAACTTTTCGAGGAGGAAGAGAACGCCACTACCATCTCTTGA |
| Transcript | >Pro_DTO377G3_2|g2471.t1 ATGGCGCCGAGCTATGCCGGCATGTCCGGTAAGCCTCTGAGTTTGACGGTGTCGACCATCGCTACTATGGGCTTC CTGCTTTTCGGTTACGATCAGGGTGTCATGTCCGGCATTATTGATTGCGATGCCTTCGGCAGGTTCATGCCTATC ACCCGGGGCGACTCCACCATGCAGGCCTTGGTGACTGCTGTCTACGAGTTGGGCTGTCTGGCTGGTGCCATGTAT GCCTTGTTCGCTGGTGACAAGTTTGGCCGTCGTCTCATGGTTATCCAAGGTGGTTATATCATGATCATTGGTGTT ATCATTCAAATCTGTGCTATCAAGGGCCATGGAGCTACTGCCCAGTTCTTTGTCGGCCGTATCGTCACTGGCATT GGCAACGGAATAAATACTTCGACTATCCCGACCTACCAAGCCGAGTGCTCGCATTCCGCCAACCGTGGTCTTCTC ATCTGTATTGAGGGTGGTATCATCGCTGTTGGTACAATGATCGCCTACTGGATTGACTTTGGTGCCTCCTACGGC CCGGATGACCTCGTCTGGCGTTTCCCTATTGGCTTCCAGATTTTCTTCGGTATTATCATTGTCGTTGGCATGTAC TATATGCCCGAGTCACCTCGCTACCTCATTTCCAAGGGCAAAATACAGGAGGGTGAGTATGTGCTCGCTGCTCTC AATGGTCACGAAATCGAATCCCACGAGACCCAGATCCAGAAGAAGCTCGTTATCGAGTCCATTGAAGCTGCCGGT GTTGCTGCCGGTGCTGGTTACTCCGATCTCCTCACTGGTGGTAAGACCCAGCACCTGCGCCGTATGCTTATCGGT TCTTCGTGTCAAATCGCCCAACAGCTATCTGGTTGCAATGCTGTGATTTACTACCTACCTGTCCTCTTGAAGAAG TCCCTCGGCCAGACTGAGTTCATGTCCATGCTTATCGGTGGTATTAATATGATCGTCTACGCCATCTTCGCCACG TTCTCCTGGTTCTTCATCGAGAGGATTGGTCGCCGCAAGCTCTTCATCGGCGGTATGACAGGTCAGATGGTTTCT ATGATCATCGTCTTCGCTTGTTTGATCCCCGACCAGACCGAAGCTTCCAAAGGTGCTGTCTTTGGTCTGTTCCTC TATATGTCCTTCTTCGGTGCCTCGATTCTGCCCCTCCCCTGGTTGTACCCCGCCGAGATCTCGCCTCTCCGTACC CGTACCAAGGCCAATGCTGTCTCGACCTGCTCAAACTGGCTGTTCAACTTCACTGTTGTTATGATCACCCCGGTT ATGCTTGAGCGTATTTCCTGGGGTACCTACCTGTTCTTTGCCGTAATGAACTTCATCTTCATCCCCCCCATGATT CTCTTCTACCCCGAGACAGCTGGCCGCAGTCTGGAGGAGATTGATCTCATCTTTGCCAAGGGTTACTGCGAGAAC ATGAGCTATGTCAAGGCTGCCAAACAGCTGCCTAAGCTCACCAATGAGGAGATTGAGGCCAAGGCTGCTGAGTAT GGCTTTGAGTCTGACCGCCGCCGCGGCGATACCGAGAATGGCGGCGAAAAGGGCTCCCCTCGAAGCACCTCCAGC GATGGCAAGCAACTTTTCGAGGAGGAAGAGAACGCCACTACCATCTCTTGA |
| Gene | >Pro_DTO377G3_2|g2471.t1 ATGGCGCCGAGCTATGCCGGCATGTCCGGTAAGCCTCTGAGTTTGACGGTGTCGACCATCGCTACTATGGGCTTC CTGCTTTTCGGTTACGATCGTGAGTATACATTGACTTCTGATACGAATTCAACGTTGCTAACAGTCTACAGAGGG TGTCATGTCCGGCATTATTGATTGCGATGCCTTCGGCAGGTTCATGCCTATCACCCGGGGCGACTCCACCATGCA GGCCTTGGTGACTGCTGTCTACGAGTTGGGCTGTCTGGCTGGTGCCATGTATGCCTTGTTCGCTGGTGACAAGTT TGGCCGTCGTCTCATGGTTATCCAAGGTGGTTATATCATGATCATTGGTGTTATCATTCAAATCTGTGCTATCAA GGGCCATGGAGCTACTGCCCAGTTCTTTGTCGGCCGTATCGTCACTGGCATTGGCAACGGAATAAATACTTCGAC TATCCCGACCTACCAAGCCGAGTGCTCGCATTCCGCCAACCGTGGTCTTCTCATCTGTATTGAGGGTGGTATCAT CGCTGTTGGTACAATGATCGCCTACTGGATTGACTTTGGTGCCTCCTACGGCCCGGATGACCTCGTCTGGCGTTT CCCTATTGGCTTCCAGATTTTCTTCGGTATTATCATTGTCGTTGGCATGTACTATATGCCCGAGTCACCTCGCTA CCTCATTTCCAAGGGCAAAATACAGGAGGGTGAGTATGTGCTCGCTGCTCTCAATGGTCACGAAATCGAATCCCA CGAGACCCAGATCCAGAAGAAGCTCGTTATCGAGTCCATTGAAGCTGCCGGTGTTGCTGCCGGTGCTGGTTACTC CGATCTCCTCACTGGTGGTAAGACCCAGCACCTGCGCCGTATGCTTATCGGTTCTTCGTGTCAAATCGCCCAACA GCTATCTGGTTGCAATGCTGTGATTTACTACCTACCTGTCCTCTTGAAGAAGTCCCTCGGCCAGACTGAGTTCAT GTCCATGCTTATCGGTGGTATTAATATGATCGTCTACGCCATCTTCGCCACGTTCTCCTGGTTCTTCATCGAGAG GATTGGTCGCCGCAAGCTCTTCATCGGCGGTATGACAGGTCAGATGGTTTCTATGATCATCGTCTTCGCTTGTTT GATCCCCGACCAGACCGAAGCTTCCAAAGGTGCTGTCTTTGGTCTGTTCCTCTATATGTCCTTCTTCGGTGCCTC GATTCTGCCCCTCCCCTGGTTGTACCCCGCCGAGATCTCGCCTCTCCGTACCCGTACCAAGGCCAATGCTGTCTC GACCTGCTCAAACTGGCTGTTCAACTTCACTGTTGTTATGATCACCCCGGTTATGCTTGAGCGTATTTCCTGGGG TACCTACCTGTTCTTTGCCGTAATGAACTTCATCTTCATCCCCCCCATGATTCTCTTCTACCCCGAGACAGCTGG CCGCAGTCTGGAGGAGATTGATCTCATCTTTGCCAAGGGTTACTGCGAGAACATGAGCTATGTCAAGGCTGCCAA ACAGCTGCCTAAGCTCACCAATGAGGAGATTGAGGCCAAGGCTGCTGAGTATGGCTTTGAGTCTGACCGCCGCCG CGGCGATACCGAGAATGGCGGCGAAAAGGGCTCCCCTCGAAGCACCTCCAGCGATGGCAAGCAACTTTTCGAGGA GGAAGAGAACGCCACTACCATCTCTTGA |