© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2468.t1 |
| Gene name | |
| Location | scaffold_03:113577..114631 |
| Strand | - |
| Gene length (bp) | 1054 |
| Transcript length (bp) | 942 |
| Coding sequence length (bp) | 942 |
| Protein length (aa) | 314 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11913 | DUF3431 | Protein of unknown function (DUF3431) | 5.8E-84 | 85 | 303 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 30 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 55.35 | 31.13 | 79.57 |
| 5d_25C | Five days - 25 degrees Celsius | 66.03 | 38.21 | 93.85 |
| 7d_25C | Seven days - 25 degrees Celsius | 66.89 | 38.65 | 95.13 |
| 10d_25C | Ten days - 25 degrees Celsius | 89.34 | 53.40 | 125.27 |
| 7d_15C | Seven days - 15 degrees Celsius | 47.29 | 25.85 | 68.74 |
| 7d_30C | Seven days - 30 degrees Celsius | 71.17 | 41.50 | 100.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.531321 | no |
| 3d_25C | 7d_25C | 0.498593 | no |
| 3d_25C | 7d_15C | 0.605349 | no |
| 3d_25C | 7d_30C | 0.335611 | no |
| 3d_25C | 10d_25C | 0.034125 | yes |
| 5d_25C | 7d_25C | 0.971859 | no |
| 5d_25C | 7d_15C | 0.172670 | no |
| 5d_25C | 7d_30C | 0.818989 | no |
| 5d_25C | 10d_25C | 0.202164 | no |
| 7d_25C | 7d_15C | 0.152787 | no |
| 7d_25C | 7d_30C | 0.855367 | no |
| 7d_25C | 10d_25C | 0.226648 | no |
| 7d_15C | 7d_30C | 0.084423 | no |
| 7d_15C | 10d_25C | 0.004045 | yes |
| 7d_30C | 10d_25C | 0.380252 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2468.t1 MRLSLRVSAAAALIILTLVLVCRNLKTKGESLQDIWHFDTGSFRTSLRPKPQPDPSQRKWRVASDRKPALVYQTT DIVVPNQGAIVMAKLKEEDTAWVGAELAEWRSVIYTVDDINAPTHTPKNKGREALPYLKYLVDHYDDLPDIVVFL HSHRDGLLAGWHIDTMDYSNVDSVRALQKEFVQQAGYVNLRCQLSPGCPSAIQPFRQPPNPESKGEAHYAAAWKE LFPGEPVPKEVAGPCCSQFAVSREQILQRPHSDYQRMYDWVMNNELPDDVTAAIMEYSWHIIFGKDPVFCPDLFQ CYADVYGEEVIFT* |
| Coding | >Pro_DTO377G3_2|g2468.t1 ATGAGGTTGTCACTTCGTGTTAGTGCCGCTGCCGCACTAATTATCCTGACTCTCGTCCTGGTCTGTCGCAATCTG AAGACCAAAGGCGAATCACTCCAGGATATATGGCACTTCGATACCGGCTCCTTCCGTACATCCCTCAGACCAAAA CCCCAGCCTGATCCATCACAACGGAAATGGCGGGTTGCATCGGACAGAAAACCCGCGTTGGTCTACCAGACCACC GATATCGTGGTCCCCAACCAGGGTGCTATTGTGATGGCCAAGCTTAAGGAGGAAGACACCGCTTGGGTCGGGGCA GAACTAGCAGAATGGCGCAGCGTCATTTACACCGTCGACGATATCAATGCCCCGACGCACACCCCGAAAAACAAG GGTCGCGAGGCTCTCCCCTACCTCAAATATCTGGTCGACCACTACGACGACCTTCCAGACATCGTGGTCTTCCTG CATAGCCACCGCGACGGCCTACTCGCCGGCTGGCACATCGACACCATGGATTACAGCAATGTGGACTCGGTGCGG GCATTGCAGAAAGAATTCGTGCAACAGGCAGGCTATGTCAATCTCCGTTGCCAATTGAGCCCAGGATGCCCCTCG GCCATCCAACCATTCCGTCAACCCCCGAATCCCGAAAGCAAAGGCGAGGCACACTACGCTGCTGCGTGGAAAGAG CTGTTCCCTGGGGAACCGGTTCCCAAGGAAGTCGCCGGCCCATGCTGCTCTCAGTTTGCGGTTTCCCGAGAGCAG ATTCTCCAGCGCCCTCATAGCGATTACCAGCGCATGTATGACTGGGTGATGAACAACGAACTGCCGGACGACGTT ACCGCGGCAATTATGGAGTACTCATGGCACATCATTTTCGGCAAAGATCCTGTCTTCTGTCCCGATTTGTTCCAA TGCTACGCAGATGTCTACGGCGAAGAAGTCATCTTTACCTAA |
| Transcript | >Pro_DTO377G3_2|g2468.t1 ATGAGGTTGTCACTTCGTGTTAGTGCCGCTGCCGCACTAATTATCCTGACTCTCGTCCTGGTCTGTCGCAATCTG AAGACCAAAGGCGAATCACTCCAGGATATATGGCACTTCGATACCGGCTCCTTCCGTACATCCCTCAGACCAAAA CCCCAGCCTGATCCATCACAACGGAAATGGCGGGTTGCATCGGACAGAAAACCCGCGTTGGTCTACCAGACCACC GATATCGTGGTCCCCAACCAGGGTGCTATTGTGATGGCCAAGCTTAAGGAGGAAGACACCGCTTGGGTCGGGGCA GAACTAGCAGAATGGCGCAGCGTCATTTACACCGTCGACGATATCAATGCCCCGACGCACACCCCGAAAAACAAG GGTCGCGAGGCTCTCCCCTACCTCAAATATCTGGTCGACCACTACGACGACCTTCCAGACATCGTGGTCTTCCTG CATAGCCACCGCGACGGCCTACTCGCCGGCTGGCACATCGACACCATGGATTACAGCAATGTGGACTCGGTGCGG GCATTGCAGAAAGAATTCGTGCAACAGGCAGGCTATGTCAATCTCCGTTGCCAATTGAGCCCAGGATGCCCCTCG GCCATCCAACCATTCCGTCAACCCCCGAATCCCGAAAGCAAAGGCGAGGCACACTACGCTGCTGCGTGGAAAGAG CTGTTCCCTGGGGAACCGGTTCCCAAGGAAGTCGCCGGCCCATGCTGCTCTCAGTTTGCGGTTTCCCGAGAGCAG ATTCTCCAGCGCCCTCATAGCGATTACCAGCGCATGTATGACTGGGTGATGAACAACGAACTGCCGGACGACGTT ACCGCGGCAATTATGGAGTACTCATGGCACATCATTTTCGGCAAAGATCCTGTCTTCTGTCCCGATTTGTTCCAA TGCTACGCAGATGTCTACGGCGAAGAAGTCATCTTTACCTAA |
| Gene | >Pro_DTO377G3_2|g2468.t1 ATGAGGTTGTCACTTCGTGTTAGTGCCGCTGCCGCACTAATTATCCTGACTCTCGTCCTGGTCTGTCGCAATCTG AAGACCAAAGGCGAATCACTCCAGGATATATGGCACTTCGATACCGGCTCCTTCCGTACATCCCTCAGACCAAAA CCCCAGCCTGATCCATCACAACGGAAATGGCGGGTTGCATCGGACAGAAAACCCGCGTTGGTCTACCAGACCACC GATATCGTGGTCCCCAACCAGGGTGCTATTGTGATGGCCAAGCTTAAGGAGGAAGACACCGCTTGGGTCGGGGCA GAACTAGCAGAGTGAGTGTGACTCGATTGTATTCCCAGAACAAGACCCTAACTGAATATCTCCAGATGGCGCAGC GTCATTTACACCGTCGACGATATCAATGCCCCGACGCACACCCCGAAAAACAAGGGTCGCGAGGCTCTCCCCTAC CTCAAATATCTGGTCGACCACTACGACGACCTTCCAGACATCGTGGTCTTCCTGCATAGCCACCGCGACGGCCTA CTCGCCGGCTGGCACATCGACACCATGGATTACAGCAATGTGGACTCGGTGCGGGCATTGCAGAAAGAATTCGTG CAACAGGCAGGCTATGTCAATCTCCGTTGCCAATTGAGCCCAGGATGCCCCTCGGCCATCCAACCATTCCGTCAA CCCCCGAATCCCGAAAGCAAAGGCGAGGCACACTACGCTGCTGCGTGGAAAGAGCTGTTCCCTGGGGAACCGGTT CCCAAGGAAGTCGCCGGCCCATGCTGCTCTCAGTTTGCGGTTTCCCGAGAGCAGATTCTCCAGCGCCCTCATAGC GATTACCAGCGCATGTATGACTGGGTGATGAACAACGAACTGCCGGACGACGTTACCGCGGCAATTATGGAGTAC TCATGGCACATCATTTTCGGCAAAGATCCTGTCTTGTAAGTTATCCTGCAATTGTATTATTTGTATTTTCCCCGC TAACACGTTTAATTGCAGCTGTCCCGATTTGTTCCAATGCTACGCAGATGTCTACGGCGAAGAAGTCATCTTTAC CTAA |