© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2465.t1 |
| Gene name | |
| Location | scaffold_03:109066..110512 |
| Strand | + |
| Gene length (bp) | 1446 |
| Transcript length (bp) | 1446 |
| Coding sequence length (bp) | 1446 |
| Protein length (aa) | 482 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00296 | Bac_luciferase | Luciferase-like monooxygenase | 1.3E-55 | 43 | 400 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.13 | 7.87 | 24.38 |
| 5d_25C | Five days - 25 degrees Celsius | 12.00 | 5.38 | 18.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.45 | 4.40 | 16.49 |
| 10d_25C | Ten days - 25 degrees Celsius | 11.12 | 4.83 | 17.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 11.65 | 4.58 | 18.72 |
| 7d_30C | Seven days - 30 degrees Celsius | 12.80 | 5.80 | 19.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.371751 | no |
| 3d_25C | 7d_25C | 0.166130 | no |
| 3d_25C | 7d_15C | 0.359785 | no |
| 3d_25C | 7d_30C | 0.512545 | no |
| 3d_25C | 10d_25C | 0.234604 | no |
| 5d_25C | 7d_25C | 0.739551 | no |
| 5d_25C | 7d_15C | 0.955992 | no |
| 5d_25C | 7d_30C | 0.891505 | no |
| 5d_25C | 10d_25C | 0.866515 | no |
| 7d_25C | 7d_15C | 0.818533 | no |
| 7d_25C | 7d_30C | 0.605478 | no |
| 7d_25C | 10d_25C | 0.895186 | no |
| 7d_15C | 7d_30C | 0.843359 | no |
| 7d_15C | 10d_25C | 0.927142 | no |
| 7d_30C | 10d_25C | 0.736551 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2465.t1 MGEVTPTSGKKQIILNAFVMNTPGHLAPGLWKHPRNKTDQYKTLSFWTDLAQLLDKAGFHAMFIADTLGAYDVYK GPRNVVPALASGAQFPVNDPLYLVPAMSAVTKNLIFGVTASVTYEKPYALARRLSTVDHLSQGRLAWNIVTSYLD SAARNHGLNEQIPHDERYAIADEYLEVLYKLWEGSFRDDAVLADRQLGVYIASDGVREINHKGKYFDVPGPHFCE PSPQRTPFLFQAGVSEAGNQFGGKHGEAIFIGGQTPEVARLTVDNIRNIAKQQGRDPKHIKVIVGINVIVAATDE EAQAKREDYLQYADDEGALALFGGWTGIDLSSHSDDEDFLFSDSPRVQSIVRRFSGTVPGTDSLPWTKRRIVEYI SVGGLQAKVVGSPTTVADELERWVEISDVDGFNLAHIVNPGTFEDIIEFLLPELRRRGLFREEIEKEGATAREVF IGSQRLPEDHTGSKYKWRAGETIPQYQTKEI* |
| Coding | >Pro_DTO377G3_2|g2465.t1 ATGGGTGAAGTCACACCAACGTCCGGCAAAAAGCAGATCATCCTCAATGCGTTCGTCATGAACACCCCGGGCCAT TTGGCACCTGGGCTATGGAAGCACCCTAGAAACAAGACCGATCAGTACAAAACACTCTCATTCTGGACCGACTTA GCTCAATTGCTGGACAAAGCCGGTTTCCATGCAATGTTCATTGCGGATACGCTGGGCGCGTACGATGTATACAAG GGCCCTAGGAATGTGGTGCCCGCATTGGCATCCGGCGCACAATTTCCCGTCAATGACCCCTTGTATCTTGTTCCT GCCATGTCCGCTGTCACAAAGAACCTTATTTTCGGAGTGACTGCCAGCGTGACGTATGAAAAACCATACGCCCTC GCTCGCCGACTCTCTACCGTGGACCATCTCAGCCAAGGCCGTTTGGCATGGAACATTGTCACATCTTATCTGGAC AGCGCAGCCCGAAACCACGGACTGAACGAGCAGATTCCTCACGACGAGCGATACGCAATAGCAGATGAATATCTT GAGGTGCTCTATAAGCTCTGGGAAGGAAGTTTCCGAGACGACGCCGTGCTCGCCGACCGACAGCTCGGGGTATAC ATTGCCAGCGATGGTGTGCGGGAGATAAACCACAAAGGAAAATACTTTGATGTTCCTGGCCCTCATTTCTGTGAG CCATCGCCACAGCGTACGCCATTCCTGTTCCAGGCCGGCGTGTCCGAGGCCGGTAATCAATTCGGTGGAAAGCAT GGTGAAGCAATCTTCATCGGTGGTCAGACTCCCGAGGTTGCTCGCTTAACGGTGGATAATATACGGAATATTGCC AAACAGCAAGGCCGGGATCCCAAGCATATCAAAGTCATTGTGGGTATCAACGTGATTGTCGCAGCGACAGATGAA GAAGCACAAGCAAAGCGCGAGGACTATCTCCAATATGCCGACGATGAAGGTGCGCTCGCTTTGTTCGGTGGATGG ACCGGAATCGACCTGTCAAGTCATTCTGATGATGAGGATTTCCTGTTCAGCGACTCGCCGCGGGTCCAGTCCATT GTTCGGAGATTCTCTGGTACCGTCCCTGGCACGGATAGCTTGCCATGGACTAAACGGAGGATCGTGGAGTATATC AGTGTGGGTGGACTACAGGCCAAGGTTGTTGGCAGTCCTACGACAGTTGCAGATGAGTTGGAAAGATGGGTGGAA ATATCCGATGTGGATGGCTTCAATCTTGCTCATATTGTGAATCCCGGGACTTTCGAGGATATCATTGAATTCTTA TTGCCTGAACTAAGACGGAGAGGGCTGTTCCGAGAGGAAATTGAGAAAGAAGGTGCCACGGCTCGCGAGGTGTTC ATTGGATCGCAACGTTTGCCTGAAGATCATACTGGAAGCAAATACAAGTGGCGAGCAGGGGAGACTATTCCTCAA TATCAGACTAAGGAGATTTAG |
| Transcript | >Pro_DTO377G3_2|g2465.t1 ATGGGTGAAGTCACACCAACGTCCGGCAAAAAGCAGATCATCCTCAATGCGTTCGTCATGAACACCCCGGGCCAT TTGGCACCTGGGCTATGGAAGCACCCTAGAAACAAGACCGATCAGTACAAAACACTCTCATTCTGGACCGACTTA GCTCAATTGCTGGACAAAGCCGGTTTCCATGCAATGTTCATTGCGGATACGCTGGGCGCGTACGATGTATACAAG GGCCCTAGGAATGTGGTGCCCGCATTGGCATCCGGCGCACAATTTCCCGTCAATGACCCCTTGTATCTTGTTCCT GCCATGTCCGCTGTCACAAAGAACCTTATTTTCGGAGTGACTGCCAGCGTGACGTATGAAAAACCATACGCCCTC GCTCGCCGACTCTCTACCGTGGACCATCTCAGCCAAGGCCGTTTGGCATGGAACATTGTCACATCTTATCTGGAC AGCGCAGCCCGAAACCACGGACTGAACGAGCAGATTCCTCACGACGAGCGATACGCAATAGCAGATGAATATCTT GAGGTGCTCTATAAGCTCTGGGAAGGAAGTTTCCGAGACGACGCCGTGCTCGCCGACCGACAGCTCGGGGTATAC ATTGCCAGCGATGGTGTGCGGGAGATAAACCACAAAGGAAAATACTTTGATGTTCCTGGCCCTCATTTCTGTGAG CCATCGCCACAGCGTACGCCATTCCTGTTCCAGGCCGGCGTGTCCGAGGCCGGTAATCAATTCGGTGGAAAGCAT GGTGAAGCAATCTTCATCGGTGGTCAGACTCCCGAGGTTGCTCGCTTAACGGTGGATAATATACGGAATATTGCC AAACAGCAAGGCCGGGATCCCAAGCATATCAAAGTCATTGTGGGTATCAACGTGATTGTCGCAGCGACAGATGAA GAAGCACAAGCAAAGCGCGAGGACTATCTCCAATATGCCGACGATGAAGGTGCGCTCGCTTTGTTCGGTGGATGG ACCGGAATCGACCTGTCAAGTCATTCTGATGATGAGGATTTCCTGTTCAGCGACTCGCCGCGGGTCCAGTCCATT GTTCGGAGATTCTCTGGTACCGTCCCTGGCACGGATAGCTTGCCATGGACTAAACGGAGGATCGTGGAGTATATC AGTGTGGGTGGACTACAGGCCAAGGTTGTTGGCAGTCCTACGACAGTTGCAGATGAGTTGGAAAGATGGGTGGAA ATATCCGATGTGGATGGCTTCAATCTTGCTCATATTGTGAATCCCGGGACTTTCGAGGATATCATTGAATTCTTA TTGCCTGAACTAAGACGGAGAGGGCTGTTCCGAGAGGAAATTGAGAAAGAAGGTGCCACGGCTCGCGAGGTGTTC ATTGGATCGCAACGTTTGCCTGAAGATCATACTGGAAGCAAATACAAGTGGCGAGCAGGGGAGACTATTCCTCAA TATCAGACTAAGGAGATTTAG |
| Gene | >Pro_DTO377G3_2|g2465.t1 ATGGGTGAAGTCACACCAACGTCCGGCAAAAAGCAGATCATCCTCAATGCGTTCGTCATGAACACCCCGGGCCAT TTGGCACCTGGGCTATGGAAGCACCCTAGAAACAAGACCGATCAGTACAAAACACTCTCATTCTGGACCGACTTA GCTCAATTGCTGGACAAAGCCGGTTTCCATGCAATGTTCATTGCGGATACGCTGGGCGCGTACGATGTATACAAG GGCCCTAGGAATGTGGTGCCCGCATTGGCATCCGGCGCACAATTTCCCGTCAATGACCCCTTGTATCTTGTTCCT GCCATGTCCGCTGTCACAAAGAACCTTATTTTCGGAGTGACTGCCAGCGTGACGTATGAAAAACCATACGCCCTC GCTCGCCGACTCTCTACCGTGGACCATCTCAGCCAAGGCCGTTTGGCATGGAACATTGTCACATCTTATCTGGAC AGCGCAGCCCGAAACCACGGACTGAACGAGCAGATTCCTCACGACGAGCGATACGCAATAGCAGATGAATATCTT GAGGTGCTCTATAAGCTCTGGGAAGGAAGTTTCCGAGACGACGCCGTGCTCGCCGACCGACAGCTCGGGGTATAC ATTGCCAGCGATGGTGTGCGGGAGATAAACCACAAAGGAAAATACTTTGATGTTCCTGGCCCTCATTTCTGTGAG CCATCGCCACAGCGTACGCCATTCCTGTTCCAGGCCGGCGTGTCCGAGGCCGGTAATCAATTCGGTGGAAAGCAT GGTGAAGCAATCTTCATCGGTGGTCAGACTCCCGAGGTTGCTCGCTTAACGGTGGATAATATACGGAATATTGCC AAACAGCAAGGCCGGGATCCCAAGCATATCAAAGTCATTGTGGGTATCAACGTGATTGTCGCAGCGACAGATGAA GAAGCACAAGCAAAGCGCGAGGACTATCTCCAATATGCCGACGATGAAGGTGCGCTCGCTTTGTTCGGTGGATGG ACCGGAATCGACCTGTCAAGTCATTCTGATGATGAGGATTTCCTGTTCAGCGACTCGCCGCGGGTCCAGTCCATT GTTCGGAGATTCTCTGGTACCGTCCCTGGCACGGATAGCTTGCCATGGACTAAACGGAGGATCGTGGAGTATATC AGTGTGGGTGGACTACAGGCCAAGGTTGTTGGCAGTCCTACGACAGTTGCAGATGAGTTGGAAAGATGGGTGGAA ATATCCGATGTGGATGGCTTCAATCTTGCTCATATTGTGAATCCCGGGACTTTCGAGGATATCATTGAATTCTTA TTGCCTGAACTAAGACGGAGAGGGCTGTTCCGAGAGGAAATTGAGAAAGAAGGTGCCACGGCTCGCGAGGTGTTC ATTGGATCGCAACGTTTGCCTGAAGATCATACTGGAAGCAAATACAAGTGGCGAGCAGGGGAGACTATTCCTCAA TATCAGACTAAGGAGATTTAG |