Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2455.t1
Gene name
Locationscaffold_03:81294..82199
Strand+
Gene length (bp)905
Transcript length (bp)603
Coding sequence length (bp)603
Protein length (aa) 201

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00957 Synaptobrevin Synaptobrevin 7.3E-16 138 194
PF13774 Longin Regulated-SNARE-like domain 5.5E-12 45 120

GO

GO Term Description Terminal node
GO:0016192 vesicle-mediated transport Yes
GO:0016021 integral component of membrane Yes
GO:0008150 biological_process No
GO:0051234 establishment of localization No
GO:0044425 membrane part No
GO:0006810 transport No
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 49 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2455.t1
MKILYMGVFRNDPKPAVELCGEKDLNGFSRFTRQSYDEFLMLFTRTVAERTKPGQRQDIEEKAYTFHTYGRTEGV
AGVIVTDGDYPALVAHQVLSKIVDEFLAKYPRTAFSDPSLRENACPLPQLKEYIVKYQDPTQADSIMKIQQELDE
TKIVLHKTIESVLERGEKIDTLVQKSDDLSSQSKKFYTQAKKQNSCCVVM*
Coding >Pro_DTO377G3_2|g2455.t1
ATGAAGATTCTTTATATGGGCGTTTTCCGGAACGACCCTAAGCCAGCTGTCGAGCTATGCGGGGAAAAGGACCTC
AACGGCTTTTCGCGCTTTACTCGTCAGAGCTACGATGAATTCCTCATGCTCTTCACCCGAACGGTCGCCGAGAGG
ACAAAGCCGGGCCAACGACAGGATATTGAGGAGAAGGCCTACACATTCCATACTTACGGACGGACAGAGGGTGTT
GCCGGTGTTATTGTAACAGATGGGGACTATCCTGCCCTGGTGGCCCACCAGGTTTTGAGCAAGATTGTGGACGAG
TTTCTTGCCAAGTACCCACGCACTGCCTTCTCCGACCCATCTTTGCGCGAGAATGCGTGCCCCCTGCCGCAGCTC
AAGGAATATATCGTCAAGTACCAGGACCCAACCCAGGCCGACAGCATCATGAAGATCCAGCAGGAGCTTGACGAA
ACCAAGATTGTCCTTCACAAGACGATCGAAAGTGTCCTGGAGCGCGGTGAGAAGATCGACACCCTGGTTCAGAAG
AGTGACGATCTGTCAAGTCAGAGCAAGAAATTCTATACCCAGGCCAAGAAGCAAAACTCTTGCTGTGTTGTGATG
TGA
Transcript >Pro_DTO377G3_2|g2455.t1
ATGAAGATTCTTTATATGGGCGTTTTCCGGAACGACCCTAAGCCAGCTGTCGAGCTATGCGGGGAAAAGGACCTC
AACGGCTTTTCGCGCTTTACTCGTCAGAGCTACGATGAATTCCTCATGCTCTTCACCCGAACGGTCGCCGAGAGG
ACAAAGCCGGGCCAACGACAGGATATTGAGGAGAAGGCCTACACATTCCATACTTACGGACGGACAGAGGGTGTT
GCCGGTGTTATTGTAACAGATGGGGACTATCCTGCCCTGGTGGCCCACCAGGTTTTGAGCAAGATTGTGGACGAG
TTTCTTGCCAAGTACCCACGCACTGCCTTCTCCGACCCATCTTTGCGCGAGAATGCGTGCCCCCTGCCGCAGCTC
AAGGAATATATCGTCAAGTACCAGGACCCAACCCAGGCCGACAGCATCATGAAGATCCAGCAGGAGCTTGACGAA
ACCAAGATTGTCCTTCACAAGACGATCGAAAGTGTCCTGGAGCGCGGTGAGAAGATCGACACCCTGGTTCAGAAG
AGTGACGATCTGTCAAGTCAGAGCAAGAAATTCTATACCCAGGCCAAGAAGCAAAACTCTTGCTGTGTTGTGATG
TGA
Gene >Pro_DTO377G3_2|g2455.t1
ATGAAGATTCTTTATATGGGCGTATGTTTTATCACAGCTTGGATTTGATTGAATATTAGCTGAGATACGGTACTT
ATTTATCAACCTCGCAGGTTTTCCGGAACGACCCTAAGCCAGCTGTCGAGCTATGCGGGGAAAAGGACCTCAACG
GGTAATTTCATATGCCCGCCCTGCAACTGACTGGAACAACCCGCTAATTGTCACTAGCTTTTCGCGCTTTACTCG
TCAGAGGTATATCCACCCTTCCTCTCTTGGTCCGACACAGCTAGGTCACTAACCGCGAAGCGCTTAATAGCTACG
ATGAATTCCTCATGCTCTTCACCCGAACGGTCGCCGAGAGGACAAAGCCGGGCCAACGACAGGATATTGAGGAGA
AGGCCTACACATTCCATACTTACGGACGGACAGAGGGTGTTGCCGGTGTTATTGTAACAGATGGGGACTATCCTG
CCCTGGTGGCCCACCAGGTTTTGAGCAAGATTGTGGACGAGTTTCTTGCCAAGTACCCACGCACTGCCTTCTCCG
ACCCATCTTTGCGCGAGAATGCGTGCCCCCTGCCGCAGCTCAAGGAATATATCGTCAAGTACCAGGACCCAACCC
AGGCCGACAGCATCATGAAGATCCAGCAGGAGCTTGACGAAACCAAGATTGTCCTTCACAAGACGGTATGCTCTT
AGGTCTGTATGAGCCCATTATATGTGCTAACCATATCCAGATCGAAAGTGTCCTGGAGCGCGGTGAGAAGATCGA
CACCCTGGTTCAGAAGAGTGACGATCTGTCAAGTCAGAGCAAGAAATTCTATACCCAGGTATGCAAATCAAGGGT
CAAGGGTAGCTTTCACTTGAATGTATTAACACAAGTAATTCCAGGCCAAGAAGCAAAACTCTTGCTGTGTTGTGA
TGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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