© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2450.t1 |
| Gene name | |
| Location | scaffold_03:67787..68481 |
| Strand | + |
| Gene length (bp) | 694 |
| Transcript length (bp) | 582 |
| Coding sequence length (bp) | 582 |
| Protein length (aa) | 194 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08265 | YL1_C | YL1 nuclear protein C-terminal domain | 5.7E-16 | 135 | 163 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 65.50 | 32.72 | 98.27 |
| 5d_25C | Five days - 25 degrees Celsius | 58.21 | 28.17 | 88.24 |
| 7d_25C | Seven days - 25 degrees Celsius | 55.12 | 26.07 | 84.17 |
| 10d_25C | Ten days - 25 degrees Celsius | 48.74 | 22.54 | 74.93 |
| 7d_15C | Seven days - 15 degrees Celsius | 62.84 | 30.98 | 94.70 |
| 7d_30C | Seven days - 30 degrees Celsius | 56.97 | 27.39 | 86.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.759770 | no |
| 3d_25C | 7d_25C | 0.623202 | no |
| 3d_25C | 7d_15C | 0.921264 | no |
| 3d_25C | 7d_30C | 0.712434 | no |
| 3d_25C | 10d_25C | 0.357001 | no |
| 5d_25C | 7d_25C | 0.900976 | no |
| 5d_25C | 7d_15C | 0.849421 | no |
| 5d_25C | 7d_30C | 0.963414 | no |
| 5d_25C | 10d_25C | 0.635339 | no |
| 7d_25C | 7d_15C | 0.718314 | no |
| 7d_25C | 7d_30C | 0.940826 | no |
| 7d_25C | 10d_25C | 0.751972 | no |
| 7d_15C | 7d_30C | 0.798956 | no |
| 7d_15C | 10d_25C | 0.439725 | no |
| 7d_30C | 10d_25C | 0.682760 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2450.t1 MPPPTPANDEAHQQLLNTLDISHVPKPFRNPHWKPSQRRNKNLKQIISEASRKEASVLATQVNSGETTPGNSGAL TDGTQTPAEGAAPNLSQATQNLSTLVLEKNARATFPTGPAVTYTNIESAPSFNPAYQHHYCDITGLDGPYTDPKT RLRYHNKEIYKVIRTLAQGVPENYLEARGAHTILKTDKNTNRQ* |
| Coding | >Pro_DTO377G3_2|g2450.t1 ATGCCTCCACCAACTCCTGCCAACGATGAAGCTCACCAGCAGCTGTTGAACACTCTAGACATTTCACATGTCCCC AAGCCCTTCCGCAACCCTCACTGGAAACCGTCCCAGCGGCGCAACAAGAATCTGAAGCAGATTATCTCGGAGGCC TCTCGGAAGGAGGCTTCAGTACTGGCAACTCAGGTCAATTCGGGCGAAACTACGCCTGGTAACTCGGGCGCTCTC ACCGATGGCACACAAACCCCCGCAGAAGGGGCAGCACCCAACCTGTCCCAGGCCACCCAAAACCTCTCGACTCTC GTCTTGGAGAAGAATGCCCGGGCGACATTCCCAACCGGTCCTGCTGTCACCTACACGAACATCGAATCCGCACCA TCGTTCAACCCTGCCTACCAGCATCACTACTGCGACATCACGGGCCTGGATGGACCTTACACCGACCCCAAGACC CGGCTGCGGTATCACAACAAGGAGATTTATAAGGTGATCCGGACTCTGGCACAGGGTGTTCCAGAAAACTACCTG GAAGCCCGCGGGGCGCACACTATTTTGAAAACGGACAAAAATACGAATCGTCAATAA |
| Transcript | >Pro_DTO377G3_2|g2450.t1 ATGCCTCCACCAACTCCTGCCAACGATGAAGCTCACCAGCAGCTGTTGAACACTCTAGACATTTCACATGTCCCC AAGCCCTTCCGCAACCCTCACTGGAAACCGTCCCAGCGGCGCAACAAGAATCTGAAGCAGATTATCTCGGAGGCC TCTCGGAAGGAGGCTTCAGTACTGGCAACTCAGGTCAATTCGGGCGAAACTACGCCTGGTAACTCGGGCGCTCTC ACCGATGGCACACAAACCCCCGCAGAAGGGGCAGCACCCAACCTGTCCCAGGCCACCCAAAACCTCTCGACTCTC GTCTTGGAGAAGAATGCCCGGGCGACATTCCCAACCGGTCCTGCTGTCACCTACACGAACATCGAATCCGCACCA TCGTTCAACCCTGCCTACCAGCATCACTACTGCGACATCACGGGCCTGGATGGACCTTACACCGACCCCAAGACC CGGCTGCGGTATCACAACAAGGAGATTTATAAGGTGATCCGGACTCTGGCACAGGGTGTTCCAGAAAACTACCTG GAAGCCCGCGGGGCGCACACTATTTTGAAAACGGACAAAAATACGAATCGTCAATAA |
| Gene | >Pro_DTO377G3_2|g2450.t1 ATGCCTCCACCAACTCCTGCCAACGATGAAGCTCACCAGCAGCTGTTGAACACTCTAGACATTTCACATGTCCCC AAGCCCTTCCGCAACCCTCACTGGAAACCGTCCCAGCGGCGCAACAAGAATCTGAAGCAGATTATCTCGGAGGCC TCTCGGAAGGAGGCTTCAGTACTGGCAACTCAGGTCAATTCGGGCGAAACTACGCCTGGTAACTCGGGCGCTCTC ACCGATGGCACACAAACCCCCGCAGAAGGGGCAGCACCCAACCTGTCCCAGGCCACCCAAAACCTCTCGACTCTC GTCTTGGAGAAGAATGCCCGGGCGACATTCCCAACCGGTCCTGCTGTCACCTACACGAACATCGAATCCGCACCA TCGTTCAACCCTGCCTACCAGCATCACTACTGCGACATCACGGGCCTGGATGGACCTTACACCGACCCCAAGACC CGGCTGCGGTATCACAACAAGGAGATTTATAAGGTGATCCGGACTCTGGCACAGGGTGTTCCAGAAAACTACCTG GAAGCCCGCGGGGCGCACACTATTTTGAAGTAAAAGGCGGCCGTTGCTTACTTTATTCAATTCCCAAACGAACGA TCATATAAGAACGGGTATGTCATACAAGAACGAATCTGGATTGTCAGAGCACTACTAATCAATTGAACTAGACAA AAATACGAATCGTCAATAA |