Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2447.t1
Gene name
Locationscaffold_03:62614..63323
Strand-
Gene length (bp)709
Transcript length (bp)531
Coding sequence length (bp)531
Protein length (aa) 177

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01284 MARVEL Membrane-associating domain 1.6E-13 12 133

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 24 0.5

Transmembrane Domains

Domain # Start End Length
1 15 34 19
2 47 69 22
3 73 92 19
4 119 141 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 236.65 142.63 330.68
5d_25C Five days - 25 degrees Celsius 595.51 364.09 826.92
7d_25C Seven days - 25 degrees Celsius 618.37 365.07 871.67
10d_25C Ten days - 25 degrees Celsius 953.60 570.10 1337.10
7d_15C Seven days - 15 degrees Celsius 282.18 168.50 395.86
7d_30C Seven days - 30 degrees Celsius 889.40 528.55 1250.26

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.000700 yes
3d_25C 7d_25C 0.000700 yes
3d_25C 7d_15C 0.514447 no
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.910795 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.064965 no
5d_25C 10d_25C 0.019624 yes
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.109209 no
7d_25C 10d_25C 0.043971 yes
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.834370 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2447.t1
MVFSTNIARPLQLATRAMQWSSAVIVMGLTSFFINRGPRGQHTIYQEVIAVLSVVFFLLAFISPFLPSLSRFVLA
IDVVFSYLWLTAFIFSAQDYSTRRCYYAIPAGLNCNSKRANEAFIFLAFIFTFFGIFLETAALWAYRKENTTERS
YEDKVHIETRPPLDAPTVPAVPAGTV*
Coding >Pro_DTO377G3_2|g2447.t1
ATGGTCTTCTCAACGAACATCGCTCGTCCACTGCAACTGGCTACTCGCGCCATGCAGTGGAGTAGCGCTGTCATT
GTCATGGGCCTGACCTCGTTCTTCATCAATCGCGGTCCCCGTGGTCAGCATACTATCTACCAAGAAGTCATTGCT
GTCCTCTCAGTCGTCTTCTTCCTCTTGGCTTTTATCTCGCCATTCCTACCCTCGTTGAGCAGATTCGTGCTCGCT
ATCGACGTGGTATTCTCCTATCTCTGGTTGACTGCCTTTATCTTCTCCGCACAAGACTACAGTACGAGACGGTGC
TACTATGCTATTCCCGCGGGTCTCAACTGCAATAGCAAGAGAGCCAATGAAGCTTTCATCTTCCTAGCTTTTATC
TTCACCTTCTTTGGAATCTTCCTTGAAACCGCCGCTCTATGGGCCTATCGCAAGGAAAACACCACCGAACGCAGT
TATGAGGATAAAGTCCATATTGAGACCCGTCCACCTCTTGATGCGCCTACAGTTCCTGCAGTTCCTGCTGGAACT
GTCTAA
Transcript >Pro_DTO377G3_2|g2447.t1
ATGGTCTTCTCAACGAACATCGCTCGTCCACTGCAACTGGCTACTCGCGCCATGCAGTGGAGTAGCGCTGTCATT
GTCATGGGCCTGACCTCGTTCTTCATCAATCGCGGTCCCCGTGGTCAGCATACTATCTACCAAGAAGTCATTGCT
GTCCTCTCAGTCGTCTTCTTCCTCTTGGCTTTTATCTCGCCATTCCTACCCTCGTTGAGCAGATTCGTGCTCGCT
ATCGACGTGGTATTCTCCTATCTCTGGTTGACTGCCTTTATCTTCTCCGCACAAGACTACAGTACGAGACGGTGC
TACTATGCTATTCCCGCGGGTCTCAACTGCAATAGCAAGAGAGCCAATGAAGCTTTCATCTTCCTAGCTTTTATC
TTCACCTTCTTTGGAATCTTCCTTGAAACCGCCGCTCTATGGGCCTATCGCAAGGAAAACACCACCGAACGCAGT
TATGAGGATAAAGTCCATATTGAGACCCGTCCACCTCTTGATGCGCCTACAGTTCCTGCAGTTCCTGCTGGAACT
GTCTAA
Gene >Pro_DTO377G3_2|g2447.t1
ATGGTCTTCTCAACGAACATCGCTCGTCCACTGCAACTGGCTACTCGCGCCATGCAGTGGAGTAGCGCTGTCATT
GTCATGGGCCTGACCTCGTTCTTCATCAATCGCGGTCCCCGTGGTCAGCATACTATCTACCAAGAAGTCATTGTA
CGTTATTAGCGCTCTATTTGATCAAACAGTTTTCACAAAGCCATGGAATCTAACTGCAAGCTTAGGCTGTCCTCT
CAGTCGTCTTCTTCCTCTTGGCTTTTATCTCGCCATTCCTACCCTCGTTGAGCAGATTCGTGCTCGCTATCGACG
TGGTATTCTCCTATCTGTATGTCAGCATTCGATCATAGTGTCTGCATCGAAGTCTCTAATATCCATTCCAGCTGG
TTGACTGCCTTTATCTTCTCCGCACAAGACTACAGTACGAGACGGTGCTACTATGCTATTCCCGCGGGTCTCAAC
TGCAATAGCAAGAGAGCCAATGAAGCTTTCATCTTCCTAGCTTTGTATGGCCTGAATGCCCCCAGCCGCTATGGA
TAGGTGAAAACTAATATATCGCAGTATCTTCACCTTCTTTGGAATCTTCCTTGAAACCGCCGCTCTATGGGCCTA
TCGCAAGGAAAACACCACCGAACGCAGTTATGAGGATAAAGTCCATATTGAGACCCGTCCACCTCTTGATGCGCC
TACAGTTCCTGCAGTTCCTGCTGGAACTGTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail