© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2447.t1 |
| Gene name | |
| Location | scaffold_03:62614..63323 |
| Strand | - |
| Gene length (bp) | 709 |
| Transcript length (bp) | 531 |
| Coding sequence length (bp) | 531 |
| Protein length (aa) | 177 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01284 | MARVEL | Membrane-associating domain | 1.6E-13 | 12 | 133 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 34 | 19 |
| 2 | 47 | 69 | 22 |
| 3 | 73 | 92 | 19 |
| 4 | 119 | 141 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 236.65 | 142.63 | 330.68 |
| 5d_25C | Five days - 25 degrees Celsius | 595.51 | 364.09 | 826.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 618.37 | 365.07 | 871.67 |
| 10d_25C | Ten days - 25 degrees Celsius | 953.60 | 570.10 | 1337.10 |
| 7d_15C | Seven days - 15 degrees Celsius | 282.18 | 168.50 | 395.86 |
| 7d_30C | Seven days - 30 degrees Celsius | 889.40 | 528.55 | 1250.26 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.514447 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.910795 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.064965 | no |
| 5d_25C | 10d_25C | 0.019624 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.109209 | no |
| 7d_25C | 10d_25C | 0.043971 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.834370 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2447.t1 MVFSTNIARPLQLATRAMQWSSAVIVMGLTSFFINRGPRGQHTIYQEVIAVLSVVFFLLAFISPFLPSLSRFVLA IDVVFSYLWLTAFIFSAQDYSTRRCYYAIPAGLNCNSKRANEAFIFLAFIFTFFGIFLETAALWAYRKENTTERS YEDKVHIETRPPLDAPTVPAVPAGTV* |
| Coding | >Pro_DTO377G3_2|g2447.t1 ATGGTCTTCTCAACGAACATCGCTCGTCCACTGCAACTGGCTACTCGCGCCATGCAGTGGAGTAGCGCTGTCATT GTCATGGGCCTGACCTCGTTCTTCATCAATCGCGGTCCCCGTGGTCAGCATACTATCTACCAAGAAGTCATTGCT GTCCTCTCAGTCGTCTTCTTCCTCTTGGCTTTTATCTCGCCATTCCTACCCTCGTTGAGCAGATTCGTGCTCGCT ATCGACGTGGTATTCTCCTATCTCTGGTTGACTGCCTTTATCTTCTCCGCACAAGACTACAGTACGAGACGGTGC TACTATGCTATTCCCGCGGGTCTCAACTGCAATAGCAAGAGAGCCAATGAAGCTTTCATCTTCCTAGCTTTTATC TTCACCTTCTTTGGAATCTTCCTTGAAACCGCCGCTCTATGGGCCTATCGCAAGGAAAACACCACCGAACGCAGT TATGAGGATAAAGTCCATATTGAGACCCGTCCACCTCTTGATGCGCCTACAGTTCCTGCAGTTCCTGCTGGAACT GTCTAA |
| Transcript | >Pro_DTO377G3_2|g2447.t1 ATGGTCTTCTCAACGAACATCGCTCGTCCACTGCAACTGGCTACTCGCGCCATGCAGTGGAGTAGCGCTGTCATT GTCATGGGCCTGACCTCGTTCTTCATCAATCGCGGTCCCCGTGGTCAGCATACTATCTACCAAGAAGTCATTGCT GTCCTCTCAGTCGTCTTCTTCCTCTTGGCTTTTATCTCGCCATTCCTACCCTCGTTGAGCAGATTCGTGCTCGCT ATCGACGTGGTATTCTCCTATCTCTGGTTGACTGCCTTTATCTTCTCCGCACAAGACTACAGTACGAGACGGTGC TACTATGCTATTCCCGCGGGTCTCAACTGCAATAGCAAGAGAGCCAATGAAGCTTTCATCTTCCTAGCTTTTATC TTCACCTTCTTTGGAATCTTCCTTGAAACCGCCGCTCTATGGGCCTATCGCAAGGAAAACACCACCGAACGCAGT TATGAGGATAAAGTCCATATTGAGACCCGTCCACCTCTTGATGCGCCTACAGTTCCTGCAGTTCCTGCTGGAACT GTCTAA |
| Gene | >Pro_DTO377G3_2|g2447.t1 ATGGTCTTCTCAACGAACATCGCTCGTCCACTGCAACTGGCTACTCGCGCCATGCAGTGGAGTAGCGCTGTCATT GTCATGGGCCTGACCTCGTTCTTCATCAATCGCGGTCCCCGTGGTCAGCATACTATCTACCAAGAAGTCATTGTA CGTTATTAGCGCTCTATTTGATCAAACAGTTTTCACAAAGCCATGGAATCTAACTGCAAGCTTAGGCTGTCCTCT CAGTCGTCTTCTTCCTCTTGGCTTTTATCTCGCCATTCCTACCCTCGTTGAGCAGATTCGTGCTCGCTATCGACG TGGTATTCTCCTATCTGTATGTCAGCATTCGATCATAGTGTCTGCATCGAAGTCTCTAATATCCATTCCAGCTGG TTGACTGCCTTTATCTTCTCCGCACAAGACTACAGTACGAGACGGTGCTACTATGCTATTCCCGCGGGTCTCAAC TGCAATAGCAAGAGAGCCAATGAAGCTTTCATCTTCCTAGCTTTGTATGGCCTGAATGCCCCCAGCCGCTATGGA TAGGTGAAAACTAATATATCGCAGTATCTTCACCTTCTTTGGAATCTTCCTTGAAACCGCCGCTCTATGGGCCTA TCGCAAGGAAAACACCACCGAACGCAGTTATGAGGATAAAGTCCATATTGAGACCCGTCCACCTCTTGATGCGCC TACAGTTCCTGCAGTTCCTGCTGGAACTGTCTAA |