© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2441.t1 |
| Gene name | |
| Location | scaffold_03:44277..46081 |
| Strand | + |
| Gene length (bp) | 1804 |
| Transcript length (bp) | 1701 |
| Coding sequence length (bp) | 1701 |
| Protein length (aa) | 567 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00732 | GMC_oxred_N | GMC oxidoreductase | 1.8E-52 | 7 | 303 |
| PF05199 | GMC_oxred_C | GMC oxidoreductase | 1.5E-32 | 417 | 550 |
| PF05834 | Lycopene_cycl | Lycopene cyclase protein | 1.3E-05 | 8 | 41 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| AA3_2 | 3.3E-143 | 6 | 559 |
| Orthofinder run ID | 2 |
| Orthogroup | 3719 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2441.t1 MESKNTYDFVIVGGGPAGCTVAAGLAKSAQRPKVLLLEAGGRNDDKALRVNGKRWTTLREPSMNWGYRTTPQEYC NGHDGDYSRGKGLGGSSAINFGVFAIGARDDYDEWASEVDDDTFGWKEMHIRYKNLETFDGRVLPKNQKYVRSVA SDHGHSGPLRVGYAQDWERDLAPTLDAFEVAGHKLNLDHNSGNPLGMAATINSAWKGERTTAVDMFENVPHNLVV VTDSPVQRVLLEGKKAVGVEAQGTKYFASRDVILSAGTLDTPKILMHSGIGPAKELEKFNISVVNDLPAIGQGLR DHYLVPLVLARNPETNDRNSFFKDPAAMEAAMKEWLHDNTGLWNRYCCQIGTGWFKSDRITASPEFKALPTSVQE FLNRETIPHYEIATHMPLHCMKPEMFKDYSYSCLVAFMINEQSRGEVHLQSSDPDVPLLFDPRFLGHPYDRRACI EIYRHLLDVSRQECFAKDTISTLMGPASDSDEDILEFWKNTLCSSWHMTGTVKMGKTGASDAAVDTRFRVRGMEN LRVADMSVVPVLTNNHTQATAYVTGITCADILIKEYGLDKQ* |
| Coding | >Pro_DTO377G3_2|g2441.t1 ATGGAATCTAAAAACACATACGACTTTGTCATCGTCGGAGGTGGCCCAGCTGGTTGCACCGTGGCTGCGGGGCTC GCCAAATCAGCCCAAAGACCTAAAGTTCTACTTCTTGAAGCAGGTGGGCGCAATGATGACAAAGCTTTGCGAGTG AATGGAAAGCGTTGGACGACATTGAGGGAACCAAGCATGAACTGGGGGTACAGGACCACACCACAGGAATATTGC AATGGGCACGATGGCGACTATTCCCGTGGAAAGGGTCTGGGAGGTAGCTCGGCAATCAACTTCGGGGTCTTTGCT ATAGGCGCGCGGGATGACTACGATGAGTGGGCATCTGAGGTGGATGACGATACCTTCGGATGGAAGGAGATGCAT ATCCGCTACAAGAATTTGGAGACCTTCGATGGTCGTGTACTTCCAAAAAATCAGAAATATGTCCGTTCGGTTGCT TCCGACCACGGCCACTCGGGTCCCTTGCGCGTCGGGTATGCCCAGGATTGGGAAAGGGACTTGGCACCCACGCTG GATGCATTCGAAGTGGCTGGACACAAGCTCAACTTGGATCACAACTCCGGCAATCCCCTTGGCATGGCTGCAACA ATCAATTCTGCTTGGAAGGGAGAGCGTACCACGGCTGTTGATATGTTTGAAAATGTTCCTCATAATCTTGTCGTT GTCACAGACAGCCCAGTACAGCGGGTCTTGTTGGAAGGCAAAAAGGCCGTTGGAGTAGAGGCTCAGGGCACAAAG TACTTCGCTTCTCGAGATGTGATTCTTTCTGCAGGCACACTCGACACCCCAAAGATTCTAATGCACTCTGGAATC GGACCGGCTAAAGAGCTTGAGAAGTTCAACATTTCAGTGGTCAACGATCTACCCGCCATTGGCCAGGGTCTCCGA GACCACTACTTGGTTCCTCTGGTTCTTGCCCGTAACCCTGAGACAAATGACCGCAATTCCTTCTTCAAAGATCCC GCCGCCATGGAGGCTGCAATGAAAGAGTGGCTTCACGACAACACCGGCCTATGGAACCGATACTGCTGCCAGATC GGCACCGGCTGGTTTAAATCAGACCGTATCACCGCCTCGCCCGAATTCAAAGCGCTTCCAACATCCGTGCAAGAG TTCCTGAACCGCGAAACCATCCCCCACTACGAGATAGCCACCCACATGCCCCTCCATTGCATGAAGCCCGAAATG TTCAAAGATTACAGCTATAGCTGTCTTGTAGCATTCATGATAAACGAACAATCCCGCGGCGAAGTGCACCTGCAG TCCTCTGACCCAGACGTCCCGCTGCTGTTCGACCCGCGGTTCCTCGGACATCCATACGATCGTCGCGCTTGTATC GAAATTTATCGGCACCTGCTCGATGTCAGTAGACAGGAGTGCTTTGCGAAGGACACTATCTCAACGCTGATGGGG CCTGCGTCTGATTCCGACGAGGACATCCTCGAGTTCTGGAAGAACACGCTCTGTTCCAGCTGGCACATGACTGGC ACGGTGAAGATGGGCAAGACTGGTGCCAGTGATGCTGCTGTTGACACGCGTTTCCGTGTTCGGGGCATGGAGAAC CTCCGCGTTGCTGATATGAGTGTTGTTCCTGTCCTCACTAATAACCACACCCAGGCTACTGCTTACGTGACTGGT ATTACTTGTGCTGATATCCTTATCAAGGAATATGGCCTCGATAAACAGTAA |
| Transcript | >Pro_DTO377G3_2|g2441.t1 ATGGAATCTAAAAACACATACGACTTTGTCATCGTCGGAGGTGGCCCAGCTGGTTGCACCGTGGCTGCGGGGCTC GCCAAATCAGCCCAAAGACCTAAAGTTCTACTTCTTGAAGCAGGTGGGCGCAATGATGACAAAGCTTTGCGAGTG AATGGAAAGCGTTGGACGACATTGAGGGAACCAAGCATGAACTGGGGGTACAGGACCACACCACAGGAATATTGC AATGGGCACGATGGCGACTATTCCCGTGGAAAGGGTCTGGGAGGTAGCTCGGCAATCAACTTCGGGGTCTTTGCT ATAGGCGCGCGGGATGACTACGATGAGTGGGCATCTGAGGTGGATGACGATACCTTCGGATGGAAGGAGATGCAT ATCCGCTACAAGAATTTGGAGACCTTCGATGGTCGTGTACTTCCAAAAAATCAGAAATATGTCCGTTCGGTTGCT TCCGACCACGGCCACTCGGGTCCCTTGCGCGTCGGGTATGCCCAGGATTGGGAAAGGGACTTGGCACCCACGCTG GATGCATTCGAAGTGGCTGGACACAAGCTCAACTTGGATCACAACTCCGGCAATCCCCTTGGCATGGCTGCAACA ATCAATTCTGCTTGGAAGGGAGAGCGTACCACGGCTGTTGATATGTTTGAAAATGTTCCTCATAATCTTGTCGTT GTCACAGACAGCCCAGTACAGCGGGTCTTGTTGGAAGGCAAAAAGGCCGTTGGAGTAGAGGCTCAGGGCACAAAG TACTTCGCTTCTCGAGATGTGATTCTTTCTGCAGGCACACTCGACACCCCAAAGATTCTAATGCACTCTGGAATC GGACCGGCTAAAGAGCTTGAGAAGTTCAACATTTCAGTGGTCAACGATCTACCCGCCATTGGCCAGGGTCTCCGA GACCACTACTTGGTTCCTCTGGTTCTTGCCCGTAACCCTGAGACAAATGACCGCAATTCCTTCTTCAAAGATCCC GCCGCCATGGAGGCTGCAATGAAAGAGTGGCTTCACGACAACACCGGCCTATGGAACCGATACTGCTGCCAGATC GGCACCGGCTGGTTTAAATCAGACCGTATCACCGCCTCGCCCGAATTCAAAGCGCTTCCAACATCCGTGCAAGAG TTCCTGAACCGCGAAACCATCCCCCACTACGAGATAGCCACCCACATGCCCCTCCATTGCATGAAGCCCGAAATG TTCAAAGATTACAGCTATAGCTGTCTTGTAGCATTCATGATAAACGAACAATCCCGCGGCGAAGTGCACCTGCAG TCCTCTGACCCAGACGTCCCGCTGCTGTTCGACCCGCGGTTCCTCGGACATCCATACGATCGTCGCGCTTGTATC GAAATTTATCGGCACCTGCTCGATGTCAGTAGACAGGAGTGCTTTGCGAAGGACACTATCTCAACGCTGATGGGG CCTGCGTCTGATTCCGACGAGGACATCCTCGAGTTCTGGAAGAACACGCTCTGTTCCAGCTGGCACATGACTGGC ACGGTGAAGATGGGCAAGACTGGTGCCAGTGATGCTGCTGTTGACACGCGTTTCCGTGTTCGGGGCATGGAGAAC CTCCGCGTTGCTGATATGAGTGTTGTTCCTGTCCTCACTAATAACCACACCCAGGCTACTGCTTACGTGACTGGT ATTACTTGTGCTGATATCCTTATCAAGGAATATGGCCTCGATAAACAGTAA |
| Gene | >Pro_DTO377G3_2|g2441.t1 ATGGAATCTAAAAACACATACGACTTTGTCATCGTCGGAGGTAATCGTGCACTATACACACCTGCAATCTCTCAT GCTCATCATTGAACAGGTGGCCCAGCTGGTTGCACCGTGGCTGCGGGGCTCGCCAAATCAGCCCAAAGACCTAAA GTTCTACTTCTTGAAGCAGGTGGGCGCAATGATGACAAAGCTTTGCGAGTGAATGGAAAGCGTTGGACGACATTG AGGGAACCAAGCATGAACTGGGGGTACAGGACCACACCACAGGAATATTGCAATGGGCACGATGGCGACTATTCC CGTGGAAAGGGTCTGGGAGGTAGCTCGGCAATCAACTTCGGGGTCTTTGCTATAGGCGCGCGGGATGACTACGAT GAGTGGGCATCTGAGGTGGATGACGATACCTTCGGATGGAAGGAGATGCATATCCGCTACAAGAATTTGGAGACC TTCGATGGTCGTGTACTTCCAAAAAATCAGAAATATGTCCGTTCGGTTGCTTCCGACCACGGCCACTCGGGTCCC TTGCGCGTCGGGTATGCCCAGGATTGGGAAAGGGACTTGGCACCCACGCTGGATGCATTCGAAGTGGCTGGACAC AAGCTCAACTTGGATCACAACTCCGGCAATCCCCTTGGCATGGCTGCAACAATCAATTCTGCTTGGAAGGGAGAG CGTACCACGGCTGTTGATATGTTTGAAAATGTTCCTCATAATCTTGTCGTTGTCACAGACAGCCCAGTACAGCGG GTCTTGTTGGAAGGCAAAAAGGCCGTTGGAGTAGAGGCTCAGGGCACAAAGTGTATATTTTATTCTGAACTCTTA CTATGCACTTCGTCTGACATGGATTACAGACTTCGCTTCTCGAGATGTGATTCTTTCTGCAGGCACACTCGACAC CCCAAAGATTCTAATGCACTCTGGAATCGGACCGGCTAAAGAGCTTGAGAAGTTCAACATTTCAGTGGTCAACGA TCTACCCGCCATTGGCCAGGGTCTCCGAGACCACTACTTGGTTCCTCTGGTTCTTGCCCGTAACCCTGAGACAAA TGACCGCAATTCCTTCTTCAAAGATCCCGCCGCCATGGAGGCTGCAATGAAAGAGTGGCTTCACGACAACACCGG CCTATGGAACCGATACTGCTGCCAGATCGGCACCGGCTGGTTTAAATCAGACCGTATCACCGCCTCGCCCGAATT CAAAGCGCTTCCAACATCCGTGCAAGAGTTCCTGAACCGCGAAACCATCCCCCACTACGAGATAGCCACCCACAT GCCCCTCCATTGCATGAAGCCCGAAATGTTCAAAGATTACAGCTATAGCTGTCTTGTAGCATTCATGATAAACGA ACAATCCCGCGGCGAAGTGCACCTGCAGTCCTCTGACCCAGACGTCCCGCTGCTGTTCGACCCGCGGTTCCTCGG ACATCCATACGATCGTCGCGCTTGTATCGAAATTTATCGGCACCTGCTCGATGTCAGTAGACAGGAGTGCTTTGC GAAGGACACTATCTCAACGCTGATGGGGCCTGCGTCTGATTCCGACGAGGACATCCTCGAGTTCTGGAAGAACAC GCTCTGTTCCAGCTGGCACATGACTGGCACGGTGAAGATGGGCAAGACTGGTGCCAGTGATGCTGCTGTTGACAC GCGTTTCCGTGTTCGGGGCATGGAGAACCTCCGCGTTGCTGATATGAGTGTTGTTCCTGTCCTCACTAATAACCA CACCCAGGCTACTGCTTACGTGACTGGTATTACTTGTGCTGATATCCTTATCAAGGAATATGGCCTCGATAAACA GTAA |