Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g2401.t1
Gene name
Location	scaffold_02:2453257..2454591
Strand	-
Gene length (bp)	1334
Transcript length (bp)	1269
Coding sequence length (bp)	1269
Protein length (aa)	423

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00106	adh_short	short chain dehydrogenase	1.6E-11	54	187
PF01370	Epimerase	NAD dependent epimerase/dehydratase family	6.7E-05	56	255

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 33	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	288	310	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g2401.t1 MPIPIIAQGLRDGVSSIPYAWTILRIAPWVLALAALKYYFEGARNSSERMMRSKVIMVTGGTSGIGAEVVRGLAT RGAQVILLTRQPPSDLYLSEYIDDLRTSTKNPLIYAEQVDLSSLHSIRLFATKWIDNIPPRRLDCIILAGGTAEP SKPRALTIDGIDLEWQTNYLANFHLLSILSPALRAQPAHRDVRVIFATCSGYIGGDLKNLDSMARGKQKVVSKRT KTSPALYAQPKGVYALSKLALNIFAHSFQRHLNAYERPDSLPPCTRVIVVDPGVTRTPGMRRWLTGGSLWGLWLY LLTWPLWWLLLKSPVQGAQSILYAAMEQQYGRGVGGWFIKECREMDYARVDVRNDEVGKKLWVFSEKMVEEAEKQ SAVIRAFEKKEAEVEKQKAEAEKAKKEAAEKKGKKADGSRRSRKAQK*
Coding	>Pro_DTO377G3_2\|g2401.t1 ATGCCCATCCCTATCATTGCCCAGGGCCTGCGGGATGGTGTCTCATCCATCCCGTATGCTTGGACAATCCTCCGC ATAGCACCATGGGTGCTAGCCCTCGCGGCGCTGAAATACTATTTTGAAGGAGCCCGCAACAGCTCCGAGCGAATG ATGCGATCAAAAGTGATAATGGTAACGGGGGGCACCTCCGGGATAGGCGCAGAAGTAGTCCGCGGGCTCGCAACT CGCGGCGCCCAAGTAATCCTCCTAACCCGCCAACCACCCTCCGACCTCTATCTCTCCGAATATATCGACGACCTC CGCACCAGCACAAAAAACCCTCTCATCTACGCCGAACAAGTCGACCTCTCCTCCCTGCACTCAATCCGCCTCTTC GCAACAAAATGGATCGACAACATCCCACCCCGTCGACTAGACTGCATAATCCTCGCCGGCGGAACAGCCGAGCCC TCCAAACCCCGAGCCCTAACAATAGACGGCATTGACCTAGAATGGCAAACAAACTACCTCGCAAACTTCCACCTC CTTAGCATCCTCAGCCCAGCCCTCCGCGCGCAGCCCGCACACCGCGACGTGCGCGTCATCTTCGCAACATGCTCC GGCTATATCGGCGGTGACTTGAAAAATCTGGACTCCATGGCGCGCGGGAAGCAGAAGGTGGTATCGAAGCGCACG AAGACGTCTCCGGCGCTGTACGCGCAGCCCAAGGGCGTGTACGCGCTCAGCAAGCTTGCGCTGAATATCTTCGCG CACTCGTTCCAGCGGCATTTGAATGCTTACGAGAGGCCGGATAGTCTGCCGCCGTGTACGCGGGTCATCGTTGTT GACCCTGGGGTGACGCGGACTCCGGGCATGCGGCGCTGGTTGACTGGTGGGTCGTTGTGGGGTCTTTGGCTGTAC TTGCTCACTTGGCCTCTCTGGTGGCTGCTGCTCAAGTCGCCTGTTCAGGGTGCGCAGAGTATTCTGTATGCGGCG ATGGAGCAGCAGTATGGGCGGGGTGTGGGTGGGTGGTTCATTAAGGAGTGTCGGGAGATGGATTATGCGCGGGTG GATGTGCGCAATGATGAGGTTGGGAAGAAGCTATGGGTTTTCAGTGAGAAGATGGTCGAGGAGGCGGAGAAGCAG AGTGCTGTTATAAGGGCTTTTGAGAAGAAGGAAGCTGAGGTTGAGAAGCAGAAGGCTGAGGCTGAGAAGGCGAAG AAGGAGGCGGCCGAGAAGAAGGGGAAGAAGGCTGATGGGTCGAGGAGGAGTCGCAAAGCTCAGAAATGA
Transcript	>Pro_DTO377G3_2\|g2401.t1 ATGCCCATCCCTATCATTGCCCAGGGCCTGCGGGATGGTGTCTCATCCATCCCGTATGCTTGGACAATCCTCCGC ATAGCACCATGGGTGCTAGCCCTCGCGGCGCTGAAATACTATTTTGAAGGAGCCCGCAACAGCTCCGAGCGAATG ATGCGATCAAAAGTGATAATGGTAACGGGGGGCACCTCCGGGATAGGCGCAGAAGTAGTCCGCGGGCTCGCAACT CGCGGCGCCCAAGTAATCCTCCTAACCCGCCAACCACCCTCCGACCTCTATCTCTCCGAATATATCGACGACCTC CGCACCAGCACAAAAAACCCTCTCATCTACGCCGAACAAGTCGACCTCTCCTCCCTGCACTCAATCCGCCTCTTC GCAACAAAATGGATCGACAACATCCCACCCCGTCGACTAGACTGCATAATCCTCGCCGGCGGAACAGCCGAGCCC TCCAAACCCCGAGCCCTAACAATAGACGGCATTGACCTAGAATGGCAAACAAACTACCTCGCAAACTTCCACCTC CTTAGCATCCTCAGCCCAGCCCTCCGCGCGCAGCCCGCACACCGCGACGTGCGCGTCATCTTCGCAACATGCTCC GGCTATATCGGCGGTGACTTGAAAAATCTGGACTCCATGGCGCGCGGGAAGCAGAAGGTGGTATCGAAGCGCACG AAGACGTCTCCGGCGCTGTACGCGCAGCCCAAGGGCGTGTACGCGCTCAGCAAGCTTGCGCTGAATATCTTCGCG CACTCGTTCCAGCGGCATTTGAATGCTTACGAGAGGCCGGATAGTCTGCCGCCGTGTACGCGGGTCATCGTTGTT GACCCTGGGGTGACGCGGACTCCGGGCATGCGGCGCTGGTTGACTGGTGGGTCGTTGTGGGGTCTTTGGCTGTAC TTGCTCACTTGGCCTCTCTGGTGGCTGCTGCTCAAGTCGCCTGTTCAGGGTGCGCAGAGTATTCTGTATGCGGCG ATGGAGCAGCAGTATGGGCGGGGTGTGGGTGGGTGGTTCATTAAGGAGTGTCGGGAGATGGATTATGCGCGGGTG GATGTGCGCAATGATGAGGTTGGGAAGAAGCTATGGGTTTTCAGTGAGAAGATGGTCGAGGAGGCGGAGAAGCAG AGTGCTGTTATAAGGGCTTTTGAGAAGAAGGAAGCTGAGGTTGAGAAGCAGAAGGCTGAGGCTGAGAAGGCGAAG AAGGAGGCGGCCGAGAAGAAGGGGAAGAAGGCTGATGGGTCGAGGAGGAGTCGCAAAGCTCAGAAATGA
Gene	>Pro_DTO377G3_2\|g2401.t1 ATGCCCATCCCTATCATTGCCCAGGGCCTGCGGGATGGTGTCTCATCCATCCCGTATGCTTGGACAATCCTCCGC ATAGCACCATGGGTGCTAGCCCTCGCGGCGCTGAAATACTATTTTGAAGGAGCCCGCAACAGCTCCGAGCGAATG ATGCGATCAAAAGTGATAATGGTAACGGTAAGAACACCCCTCCAGCACCACATCACTACCCAATCAACCAAGCTG ACAAAAACCAAATCCAGGGGGGCACCTCCGGGATAGGCGCAGAAGTAGTCCGCGGGCTCGCAACTCGCGGCGCCC AAGTAATCCTCCTAACCCGCCAACCACCCTCCGACCTCTATCTCTCCGAATATATCGACGACCTCCGCACCAGCA CAAAAAACCCTCTCATCTACGCCGAACAAGTCGACCTCTCCTCCCTGCACTCAATCCGCCTCTTCGCAACAAAAT GGATCGACAACATCCCACCCCGTCGACTAGACTGCATAATCCTCGCCGGCGGAACAGCCGAGCCCTCCAAACCCC GAGCCCTAACAATAGACGGCATTGACCTAGAATGGCAAACAAACTACCTCGCAAACTTCCACCTCCTTAGCATCC TCAGCCCAGCCCTCCGCGCGCAGCCCGCACACCGCGACGTGCGCGTCATCTTCGCAACATGCTCCGGCTATATCG GCGGTGACTTGAAAAATCTGGACTCCATGGCGCGCGGGAAGCAGAAGGTGGTATCGAAGCGCACGAAGACGTCTC CGGCGCTGTACGCGCAGCCCAAGGGCGTGTACGCGCTCAGCAAGCTTGCGCTGAATATCTTCGCGCACTCGTTCC AGCGGCATTTGAATGCTTACGAGAGGCCGGATAGTCTGCCGCCGTGTACGCGGGTCATCGTTGTTGACCCTGGGG TGACGCGGACTCCGGGCATGCGGCGCTGGTTGACTGGTGGGTCGTTGTGGGGTCTTTGGCTGTACTTGCTCACTT GGCCTCTCTGGTGGCTGCTGCTCAAGTCGCCTGTTCAGGGTGCGCAGAGTATTCTGTATGCGGCGATGGAGCAGC AGTATGGGCGGGGTGTGGGTGGGTGGTTCATTAAGGAGTGTCGGGAGATGGATTATGCGCGGGTGGATGTGCGCA ATGATGAGGTTGGGAAGAAGCTATGGGTTTTCAGTGAGAAGATGGTCGAGGAGGCGGAGAAGCAGAGTGCTGTTA TAAGGGCTTTTGAGAAGAAGGAAGCTGAGGTTGAGAAGCAGAAGGCTGAGGCTGAGAAGGCGAAGAAGGAGGCGG CCGAGAAGAAGGGGAAGAAGGCTGATGGGTCGAGGAGGAGTCGCAAAGCTCAGAAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail