© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2397.t1 |
| Gene name | |
| Location | scaffold_02:2444791..2445589 |
| Strand | + |
| Gene length (bp) | 798 |
| Transcript length (bp) | 609 |
| Coding sequence length (bp) | 609 |
| Protein length (aa) | 203 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00164 | Ribosom_S12_S23 | Ribosomal protein S12/S23 | 2.4E-29 | 93 | 200 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005840 | ribosome | Yes |
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0008152 | metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005198 | structural molecule activity | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0008150 | biological_process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0003674 | molecular_function | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043226 | organelle | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 114.47 | 65.45 | 163.49 |
| 5d_25C | Five days - 25 degrees Celsius | 85.01 | 45.78 | 124.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 73.49 | 38.35 | 108.64 |
| 10d_25C | Ten days - 25 degrees Celsius | 62.78 | 31.30 | 94.26 |
| 7d_15C | Seven days - 15 degrees Celsius | 83.08 | 44.39 | 121.78 |
| 7d_30C | Seven days - 30 degrees Celsius | 87.14 | 47.06 | 127.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.261106 | no |
| 3d_25C | 7d_25C | 0.066129 | no |
| 3d_25C | 7d_15C | 0.216577 | no |
| 3d_25C | 7d_30C | 0.310083 | no |
| 3d_25C | 10d_25C | 0.014096 | yes |
| 5d_25C | 7d_25C | 0.658476 | no |
| 5d_25C | 7d_15C | 0.955722 | no |
| 5d_25C | 7d_30C | 0.954021 | no |
| 5d_25C | 10d_25C | 0.300877 | no |
| 7d_25C | 7d_15C | 0.723651 | no |
| 7d_25C | 7d_30C | 0.597597 | no |
| 7d_25C | 10d_25C | 0.646924 | no |
| 7d_15C | 7d_30C | 0.904661 | no |
| 7d_15C | 10d_25C | 0.338503 | no |
| 7d_30C | 10d_25C | 0.250173 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2397.t1 MSQLLSPIARRALRTLTHRPAVSSPLCRTLTTSPAISFASKQSPITSRLNFHPVFRTAAVGFSAVPKRQFSSSPI IRATYNQVRRGIRTGQQARRGKSPALKGTPGLKGVCLKTGVTKPKKPNSGERKVARVRLSSGKVITAYIPGEGHN IQQHSVVQVRGGRAQDCPGVKYTLVRGAMDLGGVGSRMTSRSKYGAKKPKTD* |
| Coding | >Pro_DTO377G3_2|g2397.t1 ATGTCCCAATTACTCTCCCCAATAGCCCGTCGGGCCCTACGGACTCTGACCCACCGTCCTGCGGTCTCCTCGCCC CTCTGCCGCACCCTCACCACATCACCCGCCATCTCCTTCGCCTCGAAACAATCTCCCATCACCTCCCGCCTCAAC TTCCACCCCGTCTTCCGTACAGCCGCCGTCGGTTTCTCCGCCGTGCCAAAGCGGCAATTCTCCAGCTCGCCTATC ATCCGCGCTACATACAACCAGGTCCGGCGCGGTATCCGCACTGGACAGCAGGCTCGCCGCGGTAAATCGCCTGCA CTGAAGGGTACGCCTGGGTTGAAGGGTGTTTGTCTTAAGACTGGTGTTACTAAGCCGAAGAAGCCTAACTCTGGC GAGAGGAAGGTTGCAAGAGTGCGGTTGAGTTCTGGGAAGGTTATTACTGCTTATATTCCTGGTGAAGGCCACAAT ATCCAGCAGCATAGTGTTGTCCAGGTCCGTGGCGGACGTGCTCAGGATTGTCCTGGTGTGAAGTATACCCTTGTT CGTGGTGCGATGGATTTGGGTGGTGTTGGAAGCCGTATGACGAGTCGCTCGAAGTACGGTGCGAAGAAGCCGAAG ACCGACTAA |
| Transcript | >Pro_DTO377G3_2|g2397.t1 ATGTCCCAATTACTCTCCCCAATAGCCCGTCGGGCCCTACGGACTCTGACCCACCGTCCTGCGGTCTCCTCGCCC CTCTGCCGCACCCTCACCACATCACCCGCCATCTCCTTCGCCTCGAAACAATCTCCCATCACCTCCCGCCTCAAC TTCCACCCCGTCTTCCGTACAGCCGCCGTCGGTTTCTCCGCCGTGCCAAAGCGGCAATTCTCCAGCTCGCCTATC ATCCGCGCTACATACAACCAGGTCCGGCGCGGTATCCGCACTGGACAGCAGGCTCGCCGCGGTAAATCGCCTGCA CTGAAGGGTACGCCTGGGTTGAAGGGTGTTTGTCTTAAGACTGGTGTTACTAAGCCGAAGAAGCCTAACTCTGGC GAGAGGAAGGTTGCAAGAGTGCGGTTGAGTTCTGGGAAGGTTATTACTGCTTATATTCCTGGTGAAGGCCACAAT ATCCAGCAGCATAGTGTTGTCCAGGTCCGTGGCGGACGTGCTCAGGATTGTCCTGGTGTGAAGTATACCCTTGTT CGTGGTGCGATGGATTTGGGTGGTGTTGGAAGCCGTATGACGAGTCGCTCGAAGTACGGTGCGAAGAAGCCGAAG ACCGACTAA |
| Gene | >Pro_DTO377G3_2|g2397.t1 ATGTCCCAATTACTCTCCCCAATAGCCCGTCGGGCCCTACGGACTCTGACCCACCGTCCTGCGGTCTCCTCGCCC CTCTGCCGCACCCTCACCACATCACCCGCCATCTCCTTCGCCTCGAAACAATCTCCCATCACCTCCCGCCTCAAC TTCCACCCCGTCTTCCGTACAGCCGCCGTCGGTTTCTCCGCCGTGCCAAAGCGGCAATTCTCCAGCTCGCCTATC ATCCGCGCTACATACAACCAGGTCCGGCGCGGTATCCGCACTGGACAGCAGGCTCGCCGCGGTAAATCGCCTGCA CTGAAGGGTACGCCTGGGTTGAAGGGTGTTTGTCTTAAGACTGGTGTTACTAAGCCGAAGAAGCCTAACTCTGGC GAGAGGAAGGTTGCAAGAGTGCGGTTGAGTTCTGGGAAGGTTATTACTGCTTATATTCCTGGTGAAGGTAAGATT TATTTGCACTCGAATTGGTGTTGGAATAGGATTCTGTAGACTCTGTTCCAGTGCTGGTTTTTCCTACGGGGCTTT TTGGCTAATTTTTTTGTACAGGCCACAATATCCAGCAGCATAGTGTTGTCCAGGTCCGTGGCGGACGTGCTCAGG ATTGTCCTGGTGTGAAGTATACCCTTGTTCGTGGTGCGATGGATTTGGTAAGTCACTTTTTGCTTCTGTTTCTAT ATACCTACTTCCCGGGTGTATGTCTTTCTAGATTTTTTACTGATTATACTTTACTAGGGTGGTGTTGGAAGCCGT ATGACGAGTCGCTCGAAGTACGGTGCGAAGAAGCCGAAGACCGACTAA |