© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2388.t1 |
| Gene name | |
| Location | scaffold_02:2421238..2422776 |
| Strand | + |
| Gene length (bp) | 1538 |
| Transcript length (bp) | 1317 |
| Coding sequence length (bp) | 1317 |
| Protein length (aa) | 439 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01494 | FAD_binding_3 | FAD binding domain | 2.3E-22 | 2 | 324 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 9.9E-07 | 5 | 34 |
| PF00890 | FAD_binding_2 | FAD binding domain | 2.4E-06 | 3 | 34 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0071949 | FAD binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 33.73 | 19.02 | 48.44 |
| 5d_25C | Five days - 25 degrees Celsius | 21.18 | 10.79 | 31.58 |
| 7d_25C | Seven days - 25 degrees Celsius | 23.49 | 11.83 | 35.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.91 | 3.36 | 14.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 29.40 | 14.93 | 43.86 |
| 7d_30C | Seven days - 30 degrees Celsius | 12.95 | 5.76 | 20.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.075794 | no |
| 3d_25C | 7d_25C | 0.183361 | no |
| 3d_25C | 7d_15C | 0.684996 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.784306 | no |
| 5d_25C | 7d_15C | 0.277005 | no |
| 5d_25C | 7d_30C | 0.092527 | no |
| 5d_25C | 10d_25C | 0.006742 | yes |
| 7d_25C | 7d_15C | 0.495313 | no |
| 7d_25C | 7d_30C | 0.035449 | yes |
| 7d_25C | 10d_25C | 0.001804 | yes |
| 7d_15C | 7d_30C | 0.002761 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.301341 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2388.t1 MKVIIVGGGLGGLACAIACRREGIDVEILERSPKVHEVGAGIQIPPNGGRIMCDFGLLPQLLEQGSQVQQVDFRR YKDGRLLRSMPFGDDITEEFGAPWIIIHRVDYHRILLDEAIRLGAVLQLGAEVENIYTEQPAVLLAGGRRISADI VIGADGQMSTVRRAILESPHSPVPTGDMAYRATFSREQLESLGDERVNKLCQKIAVTSWLGPEKHTIFYPLRGGN EFNLVLVRPDTLSLDSRREQGDIEEMRESYANWDETLQKLVSCVPSVYKWKLTHLSELESWTKGSVALLGDACHP TLPYQAQGAAMAVEDGAVIGKLLGLLQVHYLDPRNSGSDPSISTRSSAQDLTAAVLTLYEKCRKARTARNVQGAI MNRKLFHIPDGFLQMIRDFLLGYAGVTRKSDWTWLSSFRQGQTLGLDVLEDCQKAFEEWRLTL* |
| Coding | >Pro_DTO377G3_2|g2388.t1 ATGAAGGTCATTATTGTCGGCGGAGGTCTAGGTGGCCTAGCATGTGCAATTGCCTGTCGCCGTGAGGGCATCGAC GTGGAAATCCTCGAGCGGTCCCCCAAAGTCCACGAAGTTGGAGCAGGAATCCAAATCCCACCAAATGGCGGTAGA ATAATGTGCGACTTTGGCCTGCTTCCCCAACTACTGGAGCAAGGAAGTCAGGTGCAACAAGTGGATTTTCGGAGG TACAAAGATGGTCGTCTTCTGCGATCAATGCCATTTGGGGACGATATCACGGAGGAGTTCGGGGCGCCGTGGATA ATTATTCATCGGGTGGACTATCATCGCATTCTTCTTGATGAGGCAATCCGACTCGGTGCGGTCCTTCAACTGGGG GCAGAAGTAGAGAATATTTACACCGAGCAGCCAGCCGTTCTTCTTGCTGGCGGGAGACGCATATCGGCAGATATT GTGATTGGTGCTGACGGTCAAATGTCTACGGTCCGAAGGGCTATTCTTGAATCTCCTCATTCTCCAGTCCCCACG GGCGACATGGCCTATCGAGCAACCTTTTCACGAGAGCAGCTGGAGTCTTTGGGTGATGAAAGAGTAAACAAACTG TGTCAGAAAATTGCCGTCACAAGCTGGTTGGGACCGGAGAAGCATACGATTTTCTATCCTCTCCGTGGTGGAAAT GAGTTCAACCTTGTTCTCGTGCGGCCCGATACCTTATCATTGGATTCGCGCAGAGAGCAGGGAGATATTGAGGAG ATGCGAGAGAGCTATGCAAACTGGGATGAAACATTACAAAAGCTGGTTTCGTGTGTGCCATCGGTATATAAATGG AAATTGACACACCTCTCCGAGCTTGAATCGTGGACCAAGGGATCTGTTGCCTTGCTTGGTGATGCCTGCCACCCC ACTCTGCCATATCAAGCACAAGGGGCTGCAATGGCTGTCGAAGACGGAGCAGTCATTGGCAAGCTTCTTGGCCTA TTGCAGGTCCATTATCTGGATCCTAGAAATTCCGGAAGCGATCCCTCAATATCCACGCGATCTTCAGCTCAAGAT CTCACAGCTGCTGTGCTTACTCTCTACGAGAAATGCCGAAAAGCACGCACAGCCCGAAATGTTCAAGGAGCAATC ATGAATCGGAAGCTTTTTCACATCCCAGATGGCTTTTTGCAAATGATCCGGGATTTCCTGTTGGGATATGCAGGA GTTACCCGGAAGAGCGATTGGACATGGCTGTCTTCATTTCGGCAGGGGCAAACCCTTGGTCTAGATGTGCTGGAG GATTGCCAAAAGGCCTTTGAGGAGTGGAGATTGACTCTTTAA |
| Transcript | >Pro_DTO377G3_2|g2388.t1 ATGAAGGTCATTATTGTCGGCGGAGGTCTAGGTGGCCTAGCATGTGCAATTGCCTGTCGCCGTGAGGGCATCGAC GTGGAAATCCTCGAGCGGTCCCCCAAAGTCCACGAAGTTGGAGCAGGAATCCAAATCCCACCAAATGGCGGTAGA ATAATGTGCGACTTTGGCCTGCTTCCCCAACTACTGGAGCAAGGAAGTCAGGTGCAACAAGTGGATTTTCGGAGG TACAAAGATGGTCGTCTTCTGCGATCAATGCCATTTGGGGACGATATCACGGAGGAGTTCGGGGCGCCGTGGATA ATTATTCATCGGGTGGACTATCATCGCATTCTTCTTGATGAGGCAATCCGACTCGGTGCGGTCCTTCAACTGGGG GCAGAAGTAGAGAATATTTACACCGAGCAGCCAGCCGTTCTTCTTGCTGGCGGGAGACGCATATCGGCAGATATT GTGATTGGTGCTGACGGTCAAATGTCTACGGTCCGAAGGGCTATTCTTGAATCTCCTCATTCTCCAGTCCCCACG GGCGACATGGCCTATCGAGCAACCTTTTCACGAGAGCAGCTGGAGTCTTTGGGTGATGAAAGAGTAAACAAACTG TGTCAGAAAATTGCCGTCACAAGCTGGTTGGGACCGGAGAAGCATACGATTTTCTATCCTCTCCGTGGTGGAAAT GAGTTCAACCTTGTTCTCGTGCGGCCCGATACCTTATCATTGGATTCGCGCAGAGAGCAGGGAGATATTGAGGAG ATGCGAGAGAGCTATGCAAACTGGGATGAAACATTACAAAAGCTGGTTTCGTGTGTGCCATCGGTATATAAATGG AAATTGACACACCTCTCCGAGCTTGAATCGTGGACCAAGGGATCTGTTGCCTTGCTTGGTGATGCCTGCCACCCC ACTCTGCCATATCAAGCACAAGGGGCTGCAATGGCTGTCGAAGACGGAGCAGTCATTGGCAAGCTTCTTGGCCTA TTGCAGGTCCATTATCTGGATCCTAGAAATTCCGGAAGCGATCCCTCAATATCCACGCGATCTTCAGCTCAAGAT CTCACAGCTGCTGTGCTTACTCTCTACGAGAAATGCCGAAAAGCACGCACAGCCCGAAATGTTCAAGGAGCAATC ATGAATCGGAAGCTTTTTCACATCCCAGATGGCTTTTTGCAAATGATCCGGGATTTCCTGTTGGGATATGCAGGA GTTACCCGGAAGAGCGATTGGACATGGCTGTCTTCATTTCGGCAGGGGCAAACCCTTGGTCTAGATGTGCTGGAG GATTGCCAAAAGGCCTTTGAGGAGTGGAGATTGACTCTTTAA |
| Gene | >Pro_DTO377G3_2|g2388.t1 ATGAAGGTCATTATTGTCGGCGGAGGTCTAGGTGGCCTAGCATGTGCAATTGCCTGTCGCCGTGAGGGCATCGAC GTGGAAATCCTCGAGCGGTCCCCCAAAGTCCACGAAGTTGGAGCAGGAATCCAAATCCCACCAAATGGCGGTAGA ATAATGTGCGACTTTGGCCTGCTTCCCCAACTACTGGAGCAAGGAAGTCAGGTGCAACAAGTGGATTTTCGGAGG TACAAAGATGGTCGTCTTCTGCGATCAATGCCATTTGGGGACGATATCACGGAGGAGTTCGGGGCGCCGTGGATG TACGTGGTTGATTGCCTTGGCGCGACATTGTCAGACTCTTACCCTTTGCAGAATTATTCATCGGGTGGACTATCA TCGCATTCTTCTTGATGAGGCAATCCGACTCGGTGCGGTCCTTCAACTGGGGGCAGAAGTAGAGAATATTTACAC CGAGCAGCCAGCCGTTCTTCTTGCTGGCGGGAGACGCATATCGGCAGATATTGTGATTGGTGCTGACGGTACGTT TATAGATCTTTTGTCGAATATATATTTAACCATCTCTACTGACAAGGAAAGGTCAAATGTCTACGGTCCGAAGGG CTATTCTTGAATCTCCTCATTCTCCAGTCCCCACGGGCGACATGGCCTATCGAGCAACCTTTTCACGAGAGCAGC TGGAGTCTTTGGGTGATGAAAGAGTAAACAAACTGTGTCAGAAAATTGCCGTCACAAGCTGGTTGGGACCGGAGA AGCATACGATTTTCTATCCTCTCCGTGGTGGAAATGAGTTCAACCTTGTTCTCGTGCGGCCCGATACCTTATCAT TGGATTCGCGCAGAGAGCAGGGAGATATTGAGGAGATGCGAGAGAGCTATGCAAACTGGGATGAAACGTAAGGAC CCTTGGAATAGTCGACTGCAATTTCCTAATATGCTTCTCGCTTTTTAGATTACAAAAGCTGGTTTCGTGTGTGCC ATCGGTATATAAATGGAAATTGACACACCTCTCCGAGCTTGAATCGTGGACCAAGGTCGGTACAATACTATGTCC TTCCAATCACGAACTTGCTAACTAGGACTTACTAGGGATCTGTTGCCTTGCTTGGTGATGCCTGCCACCCCACTC TGCCATATCAAGCACAAGGGGCTGCAATGGCTGTCGAAGACGGAGCAGTCATTGGCAAGCTTCTTGGCCTATTGC AGGTCCATTATCTGGATCCTAGAAATTCCGGAAGCGATCCCTCAATATCCACGCGATCTTCAGCTCAAGATCTCA CAGCTGCTGTGCTTACTCTCTACGAGAAATGCCGAAAAGCACGCACAGCCCGAAATGTTCAAGGAGCAATCATGA ATCGGAAGCTTTTTCACATCCCAGATGGCTTTTTGCAAATGATCCGGGATTTCCTGTTGGGATATGCAGGAGTTA CCCGGAAGAGCGATTGGACATGGCTGTCTTCATTTCGGCAGGGGCAAACCCTTGGTCTAGATGTGCTGGAGGATT GCCAAAAGGCCTTTGAGGAGTGGAGATTGACTCTTTAA |