© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2380.t1 |
| Gene name | |
| Location | scaffold_02:2405185..2406167 |
| Strand | - |
| Gene length (bp) | 982 |
| Transcript length (bp) | 714 |
| Coding sequence length (bp) | 714 |
| Protein length (aa) | 238 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02921 | UCR_TM | Ubiquinol cytochrome reductase transmembrane region | 1.4E-10 | 56 | 108 |
| PF00355 | Rieske | Rieske [2Fe-2S] domain | 1.3E-10 | 169 | 222 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051537 | 2 iron, 2 sulfur cluster binding | Yes |
| GO:0008121 | ubiquinol-cytochrome-c reductase activity | Yes |
| GO:0022853 | active ion transmembrane transporter activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | No |
| GO:0015399 | primary active transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0022804 | active transmembrane transporter activity | No |
| GO:0051540 | metal cluster binding | No |
| GO:0005488 | binding | No |
| GO:0015078 | proton transmembrane transporter activity | No |
| GO:0015453 | oxidoreduction-driven active transmembrane transporter activity | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0051536 | iron-sulfur cluster binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0009055 | electron transfer activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 376.59 | 230.89 | 522.29 |
| 5d_25C | Five days - 25 degrees Celsius | 283.71 | 174.16 | 393.25 |
| 7d_25C | Seven days - 25 degrees Celsius | 241.11 | 147.26 | 334.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 210.78 | 129.08 | 292.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 339.67 | 207.94 | 471.40 |
| 7d_30C | Seven days - 30 degrees Celsius | 200.98 | 123.00 | 278.95 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.202459 | no |
| 3d_25C | 7d_25C | 0.035668 | yes |
| 3d_25C | 7d_15C | 0.719377 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.001804 | yes |
| 5d_25C | 7d_25C | 0.528476 | no |
| 5d_25C | 7d_15C | 0.470879 | no |
| 5d_25C | 7d_30C | 0.103838 | no |
| 5d_25C | 10d_25C | 0.170248 | no |
| 7d_25C | 7d_15C | 0.117342 | no |
| 7d_25C | 7d_30C | 0.463462 | no |
| 7d_25C | 10d_25C | 0.617007 | no |
| 7d_15C | 7d_30C | 0.007779 | yes |
| 7d_15C | 10d_25C | 0.016098 | yes |
| 7d_30C | 10d_25C | 0.881052 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2380.t1 MSLSSASSTLLRTVARQQLPISRAAVTSCQQRRGVADSKSSFESPFASANEPGSTLKIPNFSKYKSNNSPRTNQV FSYFMAGTLGLATAVGAKATVQDFLVNMSASADVLAQAKVEISLGAIPEGKNVIIKWRGKPVFIRHRTQAEIDEA RSTNWETLRDPQPDEDRVQRPEWLVMLGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLEVPT YSFPEDETLIIG* |
| Coding | >Pro_DTO377G3_2|g2380.t1 ATGTCGCTCTCCTCCGCTTCCAGCACTCTGCTGCGCACCGTCGCTCGGCAGCAGCTACCCATCTCCCGCGCCGCC GTTACCTCCTGCCAGCAGCGGAGGGGAGTCGCCGATTCGAAGTCGTCTTTCGAATCCCCCTTCGCCAGTGCTAAC GAACCCGGCTCGACCCTGAAGATCCCCAACTTCAGCAAGTACAAGTCCAACAACTCGCCCCGCACCAACCAGGTC TTTTCCTACTTCATGGCCGGCACCCTCGGTCTGGCGACCGCTGTCGGTGCCAAGGCTACTGTTCAGGATTTCCTG GTCAACATGTCCGCCTCCGCCGATGTCCTGGCCCAGGCTAAGGTCGAGATCTCTCTCGGTGCCATCCCTGAGGGC AAGAACGTCATCATCAAGTGGCGTGGTAAGCCCGTCTTCATCCGTCACCGCACCCAGGCCGAGATCGATGAGGCC CGTTCAACCAATTGGGAGACTCTCCGTGACCCCCAGCCCGATGAGGACCGCGTCCAGCGTCCCGAGTGGCTCGTC ATGCTCGGTGTCTGCACCCACTTGGGTTGTGTCCCCATCGGCGAGGCCGGTGACTACGGCGGCTGGTTCTGCCCC TGCCACGGTTCCCACTACGATATCTCCGGCCGTATTCGGAGGGGCCCTGCCCCTCTGAACTTGGAGGTTCCCACC TACAGCTTCCCCGAGGATGAGACCCTGATTATCGGATAG |
| Transcript | >Pro_DTO377G3_2|g2380.t1 ATGTCGCTCTCCTCCGCTTCCAGCACTCTGCTGCGCACCGTCGCTCGGCAGCAGCTACCCATCTCCCGCGCCGCC GTTACCTCCTGCCAGCAGCGGAGGGGAGTCGCCGATTCGAAGTCGTCTTTCGAATCCCCCTTCGCCAGTGCTAAC GAACCCGGCTCGACCCTGAAGATCCCCAACTTCAGCAAGTACAAGTCCAACAACTCGCCCCGCACCAACCAGGTC TTTTCCTACTTCATGGCCGGCACCCTCGGTCTGGCGACCGCTGTCGGTGCCAAGGCTACTGTTCAGGATTTCCTG GTCAACATGTCCGCCTCCGCCGATGTCCTGGCCCAGGCTAAGGTCGAGATCTCTCTCGGTGCCATCCCTGAGGGC AAGAACGTCATCATCAAGTGGCGTGGTAAGCCCGTCTTCATCCGTCACCGCACCCAGGCCGAGATCGATGAGGCC CGTTCAACCAATTGGGAGACTCTCCGTGACCCCCAGCCCGATGAGGACCGCGTCCAGCGTCCCGAGTGGCTCGTC ATGCTCGGTGTCTGCACCCACTTGGGTTGTGTCCCCATCGGCGAGGCCGGTGACTACGGCGGCTGGTTCTGCCCC TGCCACGGTTCCCACTACGATATCTCCGGCCGTATTCGGAGGGGCCCTGCCCCTCTGAACTTGGAGGTTCCCACC TACAGCTTCCCCGAGGATGAGACCCTGATTATCGGATAG |
| Gene | >Pro_DTO377G3_2|g2380.t1 ATGTCGCTCTCCTCCGCTTCCAGCACTCTGCTGCGCACCGTCGCTCGGCAGCAGCTACCCATCTCCCGCGCCGCC GTTACCTCCTGCCAGCAGCGGAGGGGAGTCGCCGATTCGAAGTCGTCTTTCGAATCCCCCTTCGCCAGTGCTAAC GAACCCGGCTCGACCCTGAAGATCCCCAACTTCAGCAAGTACAAGTCCAACAACTCGCCCCGCACCAACCAGGTC TTTTCCTACTTCATGGCCGGCACCCTCGGTCTGGCGACCGCTGTCGGTGCCAAGGCTACTGTTCAGGGTAGGTTT TTGTGGAATCTTCGAATCAGAAAGAGATGGCATGGAATACAGTAATTGAACAATATTCTTGAATAATTGGGGAAA TTTGGGCGACTTTGAACAAACGACTGATGTTATTCTTTCTCTCCAGATTTCCTGGTCAACATGTCCGCCTCCGCC GATGTCCTGGCCCAGGCTAAGGTCGAGATCTCTCTCGGTGCCATCCCTGAGGGCAAGAACGTACGTGTTTCTATT CACCACCTCATCCGACAGATCCCATTACCCAGGATCCCTATCTAACATCCATTCCAACAGGTCATCATCAAGTGG CGTGGTAAGCCCGTCTTCATCCGTCACCGCACCCAGGCCGAGATCGATGAGGCCCGTTCAACCAATTGGGAGACT CTCCGTGACCCCCAGCCCGATGAGGACCGCGTCCAGCGTCCCGAGTGGCTCGTCATGCTCGGTAAGTGAACATGG GATTGGCGAACAACAACTCGCAACTTTCTAACTTTCCTTCCTCCCTACAGGTGTCTGCACCCACTTGGGTTGTGT CCCCATCGGCGAGGCCGGTGACTACGGCGGCTGGTTCTGCCCCTGCCACGGTTCCCACTACGATATCTCCGGCCG TATTCGGAGGGGCCCTGCCCCTCTGAACTTGGAGGTTCCCACCTACAGCTTCCCCGAGGATGAGACCCTGATTAT CGGATAG |