© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2376.t1 |
| Gene name | |
| Location | scaffold_02:2395716..2396532 |
| Strand | - |
| Gene length (bp) | 816 |
| Transcript length (bp) | 711 |
| Coding sequence length (bp) | 711 |
| Protein length (aa) | 237 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13417 | GST_N_3 | Glutathione S-transferase, N-terminal domain | 3.2E-16 | 8 | 80 |
| PF02798 | GST_N | Glutathione S-transferase, N-terminal domain | 1.0E-15 | 5 | 76 |
| PF13409 | GST_N_2 | Glutathione S-transferase, N-terminal domain | 2.0E-15 | 14 | 77 |
| PF00462 | Glutaredoxin | Glutaredoxin | 5.4E-05 | 6 | 64 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0097573 | glutathione oxidoreductase activity | Yes |
| GO:0006749 | glutathione metabolic process | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0015036 | disulfide oxidoreductase activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0015035 | protein-disulfide reductase activity | No |
| GO:0006575 | cellular modified amino acid metabolic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 80.20 | 44.65 | 115.74 |
| 5d_25C | Five days - 25 degrees Celsius | 71.86 | 39.10 | 104.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 63.84 | 33.81 | 93.87 |
| 10d_25C | Ten days - 25 degrees Celsius | 60.88 | 32.02 | 89.74 |
| 7d_15C | Seven days - 15 degrees Celsius | 39.99 | 18.56 | 61.41 |
| 7d_30C | Seven days - 30 degrees Celsius | 71.58 | 38.89 | 104.27 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.745789 | no |
| 3d_25C | 7d_25C | 0.445245 | no |
| 3d_25C | 7d_15C | 0.007091 | yes |
| 3d_25C | 7d_30C | 0.735251 | no |
| 3d_25C | 10d_25C | 0.327604 | no |
| 5d_25C | 7d_25C | 0.739065 | no |
| 5d_25C | 7d_15C | 0.030646 | yes |
| 5d_25C | 7d_30C | 0.992603 | no |
| 5d_25C | 10d_25C | 0.603492 | no |
| 7d_25C | 7d_15C | 0.096313 | no |
| 7d_25C | 7d_30C | 0.744303 | no |
| 7d_25C | 10d_25C | 0.906408 | no |
| 7d_15C | 7d_30C | 0.032181 | yes |
| 7d_15C | 10d_25C | 0.142479 | no |
| 7d_30C | 10d_25C | 0.611443 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2376.t1 MSAPKIILYTNRVCPWAHRAHIALKELGLDYEEVTIDLNTPREPWYLKINPRGLVPTISYNGTIIAESGIVAQFL ADAHQSHLLPPSSPTENAIYRARLSFFVDAFFSKVLPSFFASIRSADETERDAAAEQLVAAVVKEVEPLLADTEG KGPFFGGSEKLTLAEVQAGSFLLRILSFAKPEHGLVSAKLPALLEQAPRFKRWAEATVAHDSVNFIYDEKLVADK MRAKFAPAPKV* |
| Coding | >Pro_DTO377G3_2|g2376.t1 ATGTCCGCCCCAAAGATCATTCTCTACACGAACCGCGTCTGCCCCTGGGCCCACCGCGCGCATATCGCCCTCAAG GAACTCGGCCTCGACTATGAGGAAGTCACCATCGACCTAAACACCCCGCGCGAGCCATGGTATTTGAAGATCAAC CCACGCGGCCTCGTTCCCACCATCTCCTATAACGGAACCATCATAGCCGAATCCGGCATTGTCGCCCAATTCCTC GCAGATGCGCACCAAAGCCATCTCCTCCCACCGTCCTCGCCAACCGAGAACGCCATCTACCGCGCGCGTCTCTCT TTCTTCGTCGACGCCTTCTTCAGCAAAGTCCTGCCTTCTTTCTTTGCCAGTATCCGCTCCGCTGATGAGACCGAG CGCGATGCCGCCGCCGAGCAGCTGGTCGCTGCTGTCGTGAAGGAGGTTGAGCCACTCCTGGCAGACACGGAGGGC AAGGGTCCGTTCTTTGGTGGTAGTGAGAAACTGACCCTGGCGGAGGTTCAGGCGGGCTCGTTCTTGTTGAGGATT TTGAGCTTCGCCAAGCCTGAACATGGTCTTGTTTCGGCTAAGTTGCCCGCTTTGCTAGAGCAGGCTCCGAGGTTT AAGCGCTGGGCTGAGGCGACGGTTGCGCATGACAGTGTTAACTTCATTTATGATGAGAAGCTTGTTGCGGATAAG ATGAGGGCCAAGTTTGCGCCGGCGCCGAAGGTTTAG |
| Transcript | >Pro_DTO377G3_2|g2376.t1 ATGTCCGCCCCAAAGATCATTCTCTACACGAACCGCGTCTGCCCCTGGGCCCACCGCGCGCATATCGCCCTCAAG GAACTCGGCCTCGACTATGAGGAAGTCACCATCGACCTAAACACCCCGCGCGAGCCATGGTATTTGAAGATCAAC CCACGCGGCCTCGTTCCCACCATCTCCTATAACGGAACCATCATAGCCGAATCCGGCATTGTCGCCCAATTCCTC GCAGATGCGCACCAAAGCCATCTCCTCCCACCGTCCTCGCCAACCGAGAACGCCATCTACCGCGCGCGTCTCTCT TTCTTCGTCGACGCCTTCTTCAGCAAAGTCCTGCCTTCTTTCTTTGCCAGTATCCGCTCCGCTGATGAGACCGAG CGCGATGCCGCCGCCGAGCAGCTGGTCGCTGCTGTCGTGAAGGAGGTTGAGCCACTCCTGGCAGACACGGAGGGC AAGGGTCCGTTCTTTGGTGGTAGTGAGAAACTGACCCTGGCGGAGGTTCAGGCGGGCTCGTTCTTGTTGAGGATT TTGAGCTTCGCCAAGCCTGAACATGGTCTTGTTTCGGCTAAGTTGCCCGCTTTGCTAGAGCAGGCTCCGAGGTTT AAGCGCTGGGCTGAGGCGACGGTTGCGCATGACAGTGTTAACTTCATTTATGATGAGAAGCTTGTTGCGGATAAG ATGAGGGCCAAGTTTGCGCCGGCGCCGAAGGTTTAG |
| Gene | >Pro_DTO377G3_2|g2376.t1 ATGTCCGCCCCAAAGATCATTCTCTACACGAACCGCGTCTGCCCCTGGGCCCACCGCGCGCATATCGCCCTCAAG GAACTCGGCCTCGACTATGAGGAAGTCACCATCGACCTAAACACCCCGCGCGAGCCATGGTATTTGAAGATCAAC CCAGTAAGTGACAAGCGCTCTTCCGACACCCACTCCTTATCTATACACCTACACTTCATACTACGCCTCGTATAC TATAAACTGTTTACTAACAGCCACCTCCAACAGCGCGGCCTCGTTCCCACCATCTCCTATAACGGAACCATCATA GCCGAATCCGGCATTGTCGCCCAATTCCTCGCAGATGCGCACCAAAGCCATCTCCTCCCACCGTCCTCGCCAACC GAGAACGCCATCTACCGCGCGCGTCTCTCTTTCTTCGTCGACGCCTTCTTCAGCAAAGTCCTGCCTTCTTTCTTT GCCAGTATCCGCTCCGCTGATGAGACCGAGCGCGATGCCGCCGCCGAGCAGCTGGTCGCTGCTGTCGTGAAGGAG GTTGAGCCACTCCTGGCAGACACGGAGGGCAAGGGTCCGTTCTTTGGTGGTAGTGAGAAACTGACCCTGGCGGAG GTTCAGGCGGGCTCGTTCTTGTTGAGGATTTTGAGCTTCGCCAAGCCTGAACATGGTCTTGTTTCGGCTAAGTTG CCCGCTTTGCTAGAGCAGGCTCCGAGGTTTAAGCGCTGGGCTGAGGCGACGGTTGCGCATGACAGTGTTAACTTC ATTTATGATGAGAAGCTTGTTGCGGATAAGATGAGGGCCAAGTTTGCGCCGGCGCCGAAGGTTTAG |