Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g2357.t1
Gene name
Location	scaffold_02:2351062..2352870
Strand	-
Gene length (bp)	1808
Transcript length (bp)	1755
Coding sequence length (bp)	1755
Protein length (aa)	585

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01425	Amidase	Amidase	4.1E-68	83	385

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	144.93	87.70	202.16
5d_25C	Five days - 25 degrees Celsius	68.09	39.20	96.99
7d_25C	Seven days - 25 degrees Celsius	75.80	42.20	109.41
10d_25C	Ten days - 25 degrees Celsius	27.15	13.13	41.16
7d_15C	Seven days - 15 degrees Celsius	53.96	27.14	80.78
7d_30C	Seven days - 30 degrees Celsius	30.10	16.59	43.60

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	0.000700	yes
3d_25C	7d_25C	0.003197	yes
3d_25C	7d_15C	0.000700	yes
3d_25C	7d_30C	0.000700	yes
3d_25C	10d_25C	0.000700	yes
5d_25C	7d_25C	0.740341	no
5d_25C	7d_15C	0.429572	no
5d_25C	7d_30C	0.000700	yes
5d_25C	10d_25C	0.000700	yes
7d_25C	7d_15C	0.216893	no
7d_25C	7d_30C	0.000700	yes
7d_25C	10d_25C	0.000700	yes
7d_15C	7d_30C	0.027948	yes
7d_15C	10d_25C	0.011388	yes
7d_30C	10d_25C	0.777293	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g2357.t1 MAPLIQTLVSGLALVSSVIAQESDCLVDSQILVDPYLYDFPRLGGNGAAQFAMRPCHGFKLEEATIDQIQAELKN GTFTGVQLLECYMDRVHQTQPYLNAILQVNPDAFTIAKKLDEERAAGTVRGPLHGIPFIVKDNIASKDRLETTAG SWALLGNVVPRDSHVVHGMRKAGALLLGKAALSEWADMRSNNYSEGFSARGGQCRSAYNFTVNPGGSSTGSGVAV AANLVPIALGTETDGSVINPAQRNSIVGIKPTVGLTSRAGVIPESTHQDTVGTFGKTVRDAVYALDAIYGIDPRD NYTSAQEGLTPVGGYTQFLSNQTALKGAVFGIPWKSFWALGDADQIAQLLDLVKLIESAGATVINGTELPHYKEI VSPDGWNWDYGTTRGYSNESSYSYIKVDFYNNLRDYLSEVENTNVRSVEDLVQYNIDNYGSEGGLPGIHPAFGSG QDGLIASLESKGIMNETYFQALEFCRRTTREEGIDAALKHGNRTLDGLLVPPDVAQSVEIAAQAGYPVITVPGGV SDVSGMPFGLAIMNTAFSEATLIKYASAIEDLKKNHGPKYDRALPEWRGYLQRPLPVAF*
Coding	>Pro_DTO377G3_2\|g2357.t1 ATGGCACCTCTAATTCAAACATTGGTGAGCGGTCTCGCCTTGGTGAGCTCCGTTATTGCTCAAGAGTCCGACTGT TTGGTCGACTCCCAGATCCTCGTCGATCCCTACCTTTATGACTTCCCTCGCCTGGGCGGTAATGGCGCTGCACAG TTCGCTATGCGCCCCTGTCACGGTTTCAAGCTGGAGGAGGCTACGATCGATCAGATCCAAGCCGAGCTGAAGAAT GGCACTTTCACTGGCGTCCAGTTGCTGGAGTGCTACATGGACCGTGTCCACCAGACCCAGCCTTATTTGAATGCT ATCCTGCAAGTGAACCCGGATGCTTTCACCATTGCCAAGAAGCTCGATGAGGAGCGTGCTGCAGGCACTGTCCGT GGTCCTCTTCACGGTATTCCCTTCATTGTCAAGGACAACATCGCCAGTAAGGATCGTTTGGAGACCACTGCCGGC AGCTGGGCTCTTCTCGGTAATGTCGTGCCCCGTGATTCTCATGTCGTTCACGGCATGCGCAAGGCCGGTGCTCTG CTTCTCGGCAAGGCTGCTCTGAGTGAGTGGGCCGATATGCGCTCCAACAACTACTCCGAAGGCTTCAGTGCCCGT GGTGGTCAGTGCCGCAGTGCTTACAACTTCACCGTTAACCCCGGTGGTAGCAGCACTGGCTCTGGTGTTGCTGTC GCTGCTAACCTGGTGCCTATTGCTCTTGGAACCGAGACCGATGGCTCTGTCATCAACCCTGCTCAGCGCAACTCT ATTGTTGGCATCAAGCCCACCGTCGGTCTGACCTCGCGTGCTGGTGTCATCCCGGAATCGACCCACCAGGACACC GTCGGCACCTTCGGCAAGACCGTCCGTGATGCTGTTTACGCCCTCGATGCCATCTACGGCATTGACCCCCGCGAC AACTACACCTCCGCTCAGGAGGGTCTCACCCCCGTCGGTGGATACACCCAGTTTCTGAGCAACCAGACCGCTCTT AAGGGCGCCGTCTTCGGTATTCCCTGGAAGTCCTTCTGGGCCCTCGGCGACGCCGACCAAATCGCCCAGCTCCTT GATCTGGTCAAGCTGATCGAGTCCGCTGGCGCCACCGTCATCAACGGCACCGAGCTGCCCCACTATAAGGAGATT GTCTCGCCCGACGGCTGGAACTGGGACTATGGCACCACCCGCGGCTACTCCAACGAGTCCTCTTACTCCTACATC AAGGTTGACTTCTACAACAACCTGCGTGACTACCTGTCCGAGGTCGAGAACACTAACGTCCGCTCTGTCGAGGAC CTCGTCCAGTACAACATCGATAACTACGGCTCCGAGGGTGGTCTGCCCGGTATCCACCCTGCCTTCGGCTCTGGC CAGGACGGTCTCATCGCTTCCCTTGAGAGCAAGGGCATTATGAACGAGACATACTTCCAGGCTTTGGAGTTCTGC CGGCGCACTACCCGTGAGGAGGGTATCGATGCTGCTTTGAAGCACGGCAACCGTACTCTCGACGGTCTCCTTGTG CCTCCCGATGTCGCCCAGAGCGTTGAGATTGCCGCCCAGGCTGGATACCCCGTTATTACTGTTCCTGGTGGCGTC AGCGATGTCTCGGGCATGCCCTTTGGCCTTGCTATCATGAACACTGCTTTCTCCGAGGCCACCTTGATCAAGTAC GCCAGTGCTATCGAGGATCTGAAGAAGAACCACGGCCCCAAGTACGACCGTGCACTGCCTGAGTGGCGCGGCTAC CTGCAGCGCCCTCTCCCCGTCGCTTTCTAG
Transcript	>Pro_DTO377G3_2\|g2357.t1 ATGGCACCTCTAATTCAAACATTGGTGAGCGGTCTCGCCTTGGTGAGCTCCGTTATTGCTCAAGAGTCCGACTGT TTGGTCGACTCCCAGATCCTCGTCGATCCCTACCTTTATGACTTCCCTCGCCTGGGCGGTAATGGCGCTGCACAG TTCGCTATGCGCCCCTGTCACGGTTTCAAGCTGGAGGAGGCTACGATCGATCAGATCCAAGCCGAGCTGAAGAAT GGCACTTTCACTGGCGTCCAGTTGCTGGAGTGCTACATGGACCGTGTCCACCAGACCCAGCCTTATTTGAATGCT ATCCTGCAAGTGAACCCGGATGCTTTCACCATTGCCAAGAAGCTCGATGAGGAGCGTGCTGCAGGCACTGTCCGT GGTCCTCTTCACGGTATTCCCTTCATTGTCAAGGACAACATCGCCAGTAAGGATCGTTTGGAGACCACTGCCGGC AGCTGGGCTCTTCTCGGTAATGTCGTGCCCCGTGATTCTCATGTCGTTCACGGCATGCGCAAGGCCGGTGCTCTG CTTCTCGGCAAGGCTGCTCTGAGTGAGTGGGCCGATATGCGCTCCAACAACTACTCCGAAGGCTTCAGTGCCCGT GGTGGTCAGTGCCGCAGTGCTTACAACTTCACCGTTAACCCCGGTGGTAGCAGCACTGGCTCTGGTGTTGCTGTC GCTGCTAACCTGGTGCCTATTGCTCTTGGAACCGAGACCGATGGCTCTGTCATCAACCCTGCTCAGCGCAACTCT ATTGTTGGCATCAAGCCCACCGTCGGTCTGACCTCGCGTGCTGGTGTCATCCCGGAATCGACCCACCAGGACACC GTCGGCACCTTCGGCAAGACCGTCCGTGATGCTGTTTACGCCCTCGATGCCATCTACGGCATTGACCCCCGCGAC AACTACACCTCCGCTCAGGAGGGTCTCACCCCCGTCGGTGGATACACCCAGTTTCTGAGCAACCAGACCGCTCTT AAGGGCGCCGTCTTCGGTATTCCCTGGAAGTCCTTCTGGGCCCTCGGCGACGCCGACCAAATCGCCCAGCTCCTT GATCTGGTCAAGCTGATCGAGTCCGCTGGCGCCACCGTCATCAACGGCACCGAGCTGCCCCACTATAAGGAGATT GTCTCGCCCGACGGCTGGAACTGGGACTATGGCACCACCCGCGGCTACTCCAACGAGTCCTCTTACTCCTACATC AAGGTTGACTTCTACAACAACCTGCGTGACTACCTGTCCGAGGTCGAGAACACTAACGTCCGCTCTGTCGAGGAC CTCGTCCAGTACAACATCGATAACTACGGCTCCGAGGGTGGTCTGCCCGGTATCCACCCTGCCTTCGGCTCTGGC CAGGACGGTCTCATCGCTTCCCTTGAGAGCAAGGGCATTATGAACGAGACATACTTCCAGGCTTTGGAGTTCTGC CGGCGCACTACCCGTGAGGAGGGTATCGATGCTGCTTTGAAGCACGGCAACCGTACTCTCGACGGTCTCCTTGTG CCTCCCGATGTCGCCCAGAGCGTTGAGATTGCCGCCCAGGCTGGATACCCCGTTATTACTGTTCCTGGTGGCGTC AGCGATGTCTCGGGCATGCCCTTTGGCCTTGCTATCATGAACACTGCTTTCTCCGAGGCCACCTTGATCAAGTAC GCCAGTGCTATCGAGGATCTGAAGAAGAACCACGGCCCCAAGTACGACCGTGCACTGCCTGAGTGGCGCGGCTAC CTGCAGCGCCCTCTCCCCGTCGCTTTCTAG
Gene	>Pro_DTO377G3_2\|g2357.t1 ATGGCACCTCTAATTCAAACATTGGTGAGCGGTCTCGCCTTGGTGAGCTCCGTTATTGCTCAAGAGTCCGACTGT TTGGTCGACTCCCAGATCCTCGTCGATCCCTACCTTTATGACTTCCCTCGCCTGGGCGGTAATGGCGCTGCACAG TTCGCTATGCGCCCCTGTCACGGTTTCAAGCTGGAGGAGGCTACGATCGATCAGATCCAAGCCGAGCTGAAGAAT GGCACTTTCACTGGCGTCCAGTTGCTGGAGTGCTACATGGACCGTGTCCACCAGACCCAGCCTTATTTGAAGTAT GTTAGTTATGTTGAATCTCGTCAAAATTGTTGACTAACAGCCTTGCTAGTGCTATCCTGCAAGTGAACCCGGATG CTTTCACCATTGCCAAGAAGCTCGATGAGGAGCGTGCTGCAGGCACTGTCCGTGGTCCTCTTCACGGTATTCCCT TCATTGTCAAGGACAACATCGCCAGTAAGGATCGTTTGGAGACCACTGCCGGCAGCTGGGCTCTTCTCGGTAATG TCGTGCCCCGTGATTCTCATGTCGTTCACGGCATGCGCAAGGCCGGTGCTCTGCTTCTCGGCAAGGCTGCTCTGA GTGAGTGGGCCGATATGCGCTCCAACAACTACTCCGAAGGCTTCAGTGCCCGTGGTGGTCAGTGCCGCAGTGCTT ACAACTTCACCGTTAACCCCGGTGGTAGCAGCACTGGCTCTGGTGTTGCTGTCGCTGCTAACCTGGTGCCTATTG CTCTTGGAACCGAGACCGATGGCTCTGTCATCAACCCTGCTCAGCGCAACTCTATTGTTGGCATCAAGCCCACCG TCGGTCTGACCTCGCGTGCTGGTGTCATCCCGGAATCGACCCACCAGGACACCGTCGGCACCTTCGGCAAGACCG TCCGTGATGCTGTTTACGCCCTCGATGCCATCTACGGCATTGACCCCCGCGACAACTACACCTCCGCTCAGGAGG GTCTCACCCCCGTCGGTGGATACACCCAGTTTCTGAGCAACCAGACCGCTCTTAAGGGCGCCGTCTTCGGTATTC CCTGGAAGTCCTTCTGGGCCCTCGGCGACGCCGACCAAATCGCCCAGCTCCTTGATCTGGTCAAGCTGATCGAGT CCGCTGGCGCCACCGTCATCAACGGCACCGAGCTGCCCCACTATAAGGAGATTGTCTCGCCCGACGGCTGGAACT GGGACTATGGCACCACCCGCGGCTACTCCAACGAGTCCTCTTACTCCTACATCAAGGTTGACTTCTACAACAACC TGCGTGACTACCTGTCCGAGGTCGAGAACACTAACGTCCGCTCTGTCGAGGACCTCGTCCAGTACAACATCGATA ACTACGGCTCCGAGGGTGGTCTGCCCGGTATCCACCCTGCCTTCGGCTCTGGCCAGGACGGTCTCATCGCTTCCC TTGAGAGCAAGGGCATTATGAACGAGACATACTTCCAGGCTTTGGAGTTCTGCCGGCGCACTACCCGTGAGGAGG GTATCGATGCTGCTTTGAAGCACGGCAACCGTACTCTCGACGGTCTCCTTGTGCCTCCCGATGTCGCCCAGAGCG TTGAGATTGCCGCCCAGGCTGGATACCCCGTTATTACTGTTCCTGGTGGCGTCAGCGATGTCTCGGGCATGCCCT TTGGCCTTGCTATCATGAACACTGCTTTCTCCGAGGCCACCTTGATCAAGTACGCCAGTGCTATCGAGGATCTGA AGAAGAACCACGGCCCCAAGTACGACCGTGCACTGCCTGAGTGGCGCGGCTACCTGCAGCGCCCTCTCCCCGTCG CTTTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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