Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2356.t1
Gene name
Locationscaffold_02:2348590..2349959
Strand-
Gene length (bp)1369
Transcript length (bp)1131
Coding sequence length (bp)1131
Protein length (aa) 377

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00544 Pectate_lyase_4 Pectate lyase 1.5E-15 120 292

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2356.t1
MKIAAILAALAVRAAAVGVSGAAEGFAKGVTGGGSATPVYPSTTAELVSYLGDSSARVIVLSQTFDFTSTEGTTT
STGCAPWGTASACQVAINQNDWCTNYEPDAPSVSVSYDNAGVLGITVKSNKSLIGSGSAGIIKGKGLRIVSGASN
IIIQNIAITDINPKYVWGGDAITIDNSDLVWIDHVTTARIGRQHIVLGTDASKRVTISNNYINGVTDYSATCDGY
HYWGIYLDGSSDLVTLKGNYIYHTSGRAPKVQGNTLLHAVNNYWYQNSGHAFEIGSGGYVLAEGNVFQNIVAVAE
SPIDGQLFSSPDTTTNAVCSTYLGRVCQVNGFGSSGTFSQADTAFLTNFSGKNIAAATAYTAVVASVTANAGQGK
L*
Coding >Pro_DTO377G3_2|g2356.t1
ATGAAGATCGCAGCCATCCTTGCAGCACTCGCAGTGCGAGCTGCGGCCGTCGGTGTCTCCGGCGCAGCAGAGGGT
TTTGCCAAGGGCGTCACTGGCGGTGGCTCTGCCACGCCTGTCTACCCCAGCACCACAGCCGAGCTGGTCTCGTAC
CTGGGTGACTCTTCAGCGCGCGTGATCGTCCTGTCCCAGACCTTCGACTTCACCAGCACAGAGGGAACTACTACC
TCTACTGGCTGCGCGCCTTGGGGTACTGCGTCTGCTTGCCAGGTTGCCATCAACCAGAACGACTGGTGCACGAAC
TACGAGCCGGACGCACCCTCCGTCTCTGTCAGCTATGACAACGCCGGTGTCCTCGGCATAACCGTCAAATCCAAC
AAATCCCTCATCGGCTCCGGCTCGGCTGGTATCATCAAGGGCAAGGGTCTGCGAATCGTCAGCGGTGCGAGCAAC
ATCATCATCCAGAACATCGCCATCACCGACATCAACCCTAAGTACGTCTGGGGCGGTGATGCCATCACCATCGAC
AACTCAGACCTAGTCTGGATCGACCACGTCACAACCGCCCGCATCGGACGCCAACACATCGTGCTCGGTACTGAT
GCCTCCAAGCGCGTCACCATCTCCAACAACTACATCAACGGCGTGACCGATTACTCCGCCACCTGCGACGGATAC
CACTACTGGGGCATCTACCTCGACGGATCCAGCGACCTCGTTACCCTGAAGGGCAACTACATCTACCACACCAGT
GGACGTGCGCCAAAGGTGCAGGGAAATACACTTTTGCATGCTGTTAACAACTACTGGTACCAGAACTCGGGACAC
GCGTTCGAGATCGGCTCCGGCGGATATGTTCTCGCTGAGGGAAATGTGTTCCAGAATATTGTGGCTGTTGCTGAG
TCGCCTATTGATGGACAGTTGTTTTCGTCGCCGGATACCACCACCAATGCTGTCTGCAGCACGTATCTTGGTCGG
GTCTGTCAGGTCAATGGATTTGGGTCTTCCGGAACCTTTAGTCAGGCTGATACTGCATTCTTGACCAATTTCTCA
GGAAAGAATATTGCGGCTGCGACGGCTTACACGGCTGTTGTTGCCAGTGTCACTGCTAATGCTGGCCAGGGTAAG
CTTTAA
Transcript >Pro_DTO377G3_2|g2356.t1
ATGAAGATCGCAGCCATCCTTGCAGCACTCGCAGTGCGAGCTGCGGCCGTCGGTGTCTCCGGCGCAGCAGAGGGT
TTTGCCAAGGGCGTCACTGGCGGTGGCTCTGCCACGCCTGTCTACCCCAGCACCACAGCCGAGCTGGTCTCGTAC
CTGGGTGACTCTTCAGCGCGCGTGATCGTCCTGTCCCAGACCTTCGACTTCACCAGCACAGAGGGAACTACTACC
TCTACTGGCTGCGCGCCTTGGGGTACTGCGTCTGCTTGCCAGGTTGCCATCAACCAGAACGACTGGTGCACGAAC
TACGAGCCGGACGCACCCTCCGTCTCTGTCAGCTATGACAACGCCGGTGTCCTCGGCATAACCGTCAAATCCAAC
AAATCCCTCATCGGCTCCGGCTCGGCTGGTATCATCAAGGGCAAGGGTCTGCGAATCGTCAGCGGTGCGAGCAAC
ATCATCATCCAGAACATCGCCATCACCGACATCAACCCTAAGTACGTCTGGGGCGGTGATGCCATCACCATCGAC
AACTCAGACCTAGTCTGGATCGACCACGTCACAACCGCCCGCATCGGACGCCAACACATCGTGCTCGGTACTGAT
GCCTCCAAGCGCGTCACCATCTCCAACAACTACATCAACGGCGTGACCGATTACTCCGCCACCTGCGACGGATAC
CACTACTGGGGCATCTACCTCGACGGATCCAGCGACCTCGTTACCCTGAAGGGCAACTACATCTACCACACCAGT
GGACGTGCGCCAAAGGTGCAGGGAAATACACTTTTGCATGCTGTTAACAACTACTGGTACCAGAACTCGGGACAC
GCGTTCGAGATCGGCTCCGGCGGATATGTTCTCGCTGAGGGAAATGTGTTCCAGAATATTGTGGCTGTTGCTGAG
TCGCCTATTGATGGACAGTTGTTTTCGTCGCCGGATACCACCACCAATGCTGTCTGCAGCACGTATCTTGGTCGG
GTCTGTCAGGTCAATGGATTTGGGTCTTCCGGAACCTTTAGTCAGGCTGATACTGCATTCTTGACCAATTTCTCA
GGAAAGAATATTGCGGCTGCGACGGCTTACACGGCTGTTGTTGCCAGTGTCACTGCTAATGCTGGCCAGGGTAAG
CTTTAA
Gene >Pro_DTO377G3_2|g2356.t1
ATGAAGATCGCAGCCATCCTTGCAGCACTCGCAGTGCGAGCTGCGGCCGTCGGTGTCTCCGGCGCAGCAGAGGGT
TTTGCCAAGGGCGTCACTGGCGGTGGCTCTGCCACGCCTGTCTACCCCAGCACCACAGCCGAGCTGGTCTCGTAC
CTGGGTGACTCTTCAGCGCGCGTGATCGTCCTGTCCCAGACCTTCGACTTCACCAGCACAGAGGGAACTACTACC
TCTACTGGCTGCGCGCCTTGGGGTACTGCGTCTGCTTGCCAGGTTGCCATCAACCAGAACGACTGGTGCACGAAC
TACGAGCCGGACGCACCCTCCGTCTCTGTCAGCTAGTACGCATTCCACACCCCATAATTCCAATCAACCATACTG
ACTGGCTCTCTCAGTGACAACGCCGGTGTCCTCGGCATAACCGTCAAATCCAACAAATCCCTCATCGGCTCCGGC
TCGGCTGGTATCATCAAGGGCAAGGGTCTGCGAATCGTCAGCGGTGCGAGCAACATCATCATCCAGTAAGATACT
GCCTACTACTACCTACAGATACTATACGCAATTAAACCAGATCCCGAAACTAACACCCACGCAGGAACATCGCCA
TCACCGACATCAACCCTAAGTACGTCTGGGGCGGTGATGCCATCACCATCGACAACTCAGACCTAGTCTGGATCG
ACCACGTCACAACCGCCCGCATCGGACGCCAACACATCGTGCTCGGTACTGATGCCTCCAAGCGCGTCACCATCT
CCAACAACTACATCAACGGCGTGACCGATTACTCCGCCACCTGCGACGGATACCACTACTGGGGCATCTACCTCG
ACGGATCCAGCGACCTCGTTACCCTGAAGGGCAACTACATCTACCACACCAGTGGACGTGCGCCAAAGGTGCAGG
GAAATACACTTTTGCATGCTGTGAGTTGAATCAATTTTGCCTTTTTCTTGAGTTTTAATTCTCTTTTGGGAAGAT
CAACTCTCTCGGGAGTTCTATTTTGGAAATATGAATACATACTAACACACGCCAGGTTAACAACTACTGGTACCA
GAACTCGGGACACGCGTTCGAGATCGGCTCCGGCGGATATGTTCTCGCTGAGGGAAATGTGTTCCAGAATATTGT
GGCTGTTGCTGAGTCGCCTATTGATGGACAGTTGTTTTCGTCGCCGGATACCACCACCAATGCTGTCTGCAGCAC
GTATCTTGGTCGGGTCTGTCAGGTCAATGGATTTGGGTCTTCCGGAACCTTTAGTCAGGCTGATACTGCATTCTT
GACCAATTTCTCAGGAAAGAATATTGCGGCTGCGACGGCTTACACGGCTGTTGTTGCCAGTGTCACTGCTAATGC
TGGCCAGGGTAAGCTTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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