© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2353.t1 |
| Gene name | |
| Location | scaffold_02:2341456..2342422 |
| Strand | - |
| Gene length (bp) | 966 |
| Transcript length (bp) | 741 |
| Coding sequence length (bp) | 741 |
| Protein length (aa) | 247 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 4.2E-48 | 16 | 245 |
| PF00106 | adh_short | short chain dehydrogenase | 3.6E-41 | 8 | 201 |
| PF08659 | KR | KR domain | 3.5E-10 | 9 | 165 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.02 | 5.76 | 26.28 |
| 5d_25C | Five days - 25 degrees Celsius | 16.08 | 5.81 | 26.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 17.24 | 6.21 | 28.27 |
| 10d_25C | Ten days - 25 degrees Celsius | 16.48 | 5.87 | 27.09 |
| 7d_15C | Seven days - 15 degrees Celsius | 17.77 | 6.29 | 29.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.41 | 3.64 | 19.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.994236 | no |
| 3d_25C | 7d_25C | 0.889511 | no |
| 3d_25C | 7d_15C | 0.840099 | no |
| 3d_25C | 7d_30C | 0.420451 | no |
| 3d_25C | 10d_25C | 0.960243 | no |
| 5d_25C | 7d_25C | 0.897897 | no |
| 5d_25C | 7d_15C | 0.850393 | no |
| 5d_25C | 7d_30C | 0.411607 | no |
| 5d_25C | 10d_25C | 0.965623 | no |
| 7d_25C | 7d_15C | 0.959617 | no |
| 7d_25C | 7d_30C | 0.302532 | no |
| 7d_25C | 10d_25C | 0.934919 | no |
| 7d_15C | 7d_30C | 0.269398 | no |
| 7d_15C | 10d_25C | 0.891804 | no |
| 7d_30C | 10d_25C | 0.382816 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2353.t1 MASSPTPVVLITAGSAGLGAATVRLFAKHGYRVVINYNANAQRAEALCAELGGDGHVTIQANLGSRDDVERLVRE AYAQMGRLDVVFSNGGWTRFSDTTSLDDNAVEADWDRAFAMNVKSHLWLLQAARPHLDETEGAFVTTSSITGLQG MGSSLAYSATKAAQLHMVRGLATMVAPKIRVNSVSPGLLQTEWAERFSEEQKEAHREKTKLKRFVAVEDVAAQVL SLATSKSMTGANIIIDAGYTL* |
| Coding | >Pro_DTO377G3_2|g2353.t1 ATGGCATCTTCACCGACTCCCGTAGTCCTCATCACAGCCGGTAGCGCAGGCCTGGGTGCCGCGACCGTCCGTCTC TTCGCAAAACACGGGTACCGCGTCGTGATTAACTACAACGCGAACGCGCAGCGTGCCGAAGCCCTGTGCGCCGAG CTTGGTGGCGATGGCCACGTCACGATCCAGGCCAACCTGGGCTCGCGGGACGACGTCGAGCGCCTTGTGCGTGAG GCCTACGCGCAGATGGGCCGCCTGGACGTCGTCTTCTCTAACGGCGGCTGGACTCGCTTTAGCGACACGACGTCG CTGGACGACAACGCCGTCGAAGCGGACTGGGACCGTGCCTTCGCTATGAACGTCAAGTCGCACCTCTGGCTGCTG CAGGCGGCGCGACCGCACCTCGACGAGACGGAGGGGGCGTTCGTCACGACGTCTTCTATTACGGGCCTGCAGGGT ATGGGGAGCTCGTTGGCTTATTCGGCTACGAAGGCTGCACAGCTACACATGGTCAGGGGCCTCGCCACCATGGTG GCGCCCAAGATCCGGGTGAATAGCGTGTCGCCTGGGCTGCTTCAAACGGAATGGGCAGAGCGGTTTAGCGAAGAG CAGAAGGAAGCCCACAGGGAAAAAACCAAGCTGAAGAGGTTTGTCGCAGTCGAGGATGTGGCCGCCCAGGTTCTT AGTCTGGCGACGTCGAAGAGTATGACTGGGGCAAACATAATCATTGATGCTGGATATACGCTATAG |
| Transcript | >Pro_DTO377G3_2|g2353.t1 ATGGCATCTTCACCGACTCCCGTAGTCCTCATCACAGCCGGTAGCGCAGGCCTGGGTGCCGCGACCGTCCGTCTC TTCGCAAAACACGGGTACCGCGTCGTGATTAACTACAACGCGAACGCGCAGCGTGCCGAAGCCCTGTGCGCCGAG CTTGGTGGCGATGGCCACGTCACGATCCAGGCCAACCTGGGCTCGCGGGACGACGTCGAGCGCCTTGTGCGTGAG GCCTACGCGCAGATGGGCCGCCTGGACGTCGTCTTCTCTAACGGCGGCTGGACTCGCTTTAGCGACACGACGTCG CTGGACGACAACGCCGTCGAAGCGGACTGGGACCGTGCCTTCGCTATGAACGTCAAGTCGCACCTCTGGCTGCTG CAGGCGGCGCGACCGCACCTCGACGAGACGGAGGGGGCGTTCGTCACGACGTCTTCTATTACGGGCCTGCAGGGT ATGGGGAGCTCGTTGGCTTATTCGGCTACGAAGGCTGCACAGCTACACATGGTCAGGGGCCTCGCCACCATGGTG GCGCCCAAGATCCGGGTGAATAGCGTGTCGCCTGGGCTGCTTCAAACGGAATGGGCAGAGCGGTTTAGCGAAGAG CAGAAGGAAGCCCACAGGGAAAAAACCAAGCTGAAGAGGTTTGTCGCAGTCGAGGATGTGGCCGCCCAGGTTCTT AGTCTGGCGACGTCGAAGAGTATGACTGGGGCAAACATAATCATTGATGCTGGATATACGCTATAG |
| Gene | >Pro_DTO377G3_2|g2353.t1 ATGGCATCTTCACCGACTCCCGTAGTCCTCATCACAGCCGGTAGCGCAGGCCTGGGTGCCGCGACCGTCCGTCTC TTCGCAAAACACGGGTACCGCGTCGTGATTAACTACAACGCGAACGCGCAGCGTGCCGAAGCCCTGTGCGCCGAG CTTGGTGGCGATGGCCACGTCACGATCCAGGCCAACCTGGGCTCGCGGGACGACGTCGAGCGCCTTGTGCGTGAG GCCTACGCGCAGATGGGCCGCCTGGACGTCGTCTTCTCTAACGGCGGCTGGACTCGCTTTAGCGACACGACGTCG CTGGACGACAACGCCGTCGAAGCGGACTGGGACCGTGCCTTCGCTATGAACGTCAAGTCGCACCTCTGGCTGCTG CAGGCGGCGCGACCGCACCTCGACGAGACGGAGGGGGCGTTCGTCACGACGTCTTCTATTACGGGCCTGCAGGGT ATGGGGAGCTCGTTGGTACGTTTCCTTGACCCCGGGTAGCTTGGTATTGGAATACCACGTCGAGGATTGCGTAAG TTATCGAGAAACTAACAACGTCTTGTCGTTCAGGCTTATTCGGCTACGAAGGCTGCACAGCTACACATGGTCAGG GGCCTCGCCACCATGGTGGCGCCCAAGATCCGGGTGAATAGCGTGTCGCCTGGGCTGCTTCAAACGGTGAGGATT TCCCCGTCTATCTACCATGAGTGATAGGAATGAGGGCTAATCTTTTAATCACCAGGAATGGGCAGAGCGGTTTAG CGAAGAGCAGAAGGAAGCCCACAGGGAAAAAACCAAGCTGAAGAGGTTTGTCGCAGTCGAGGTAAGTTGTTTGAA CCCCAACCTTTCTGTCACTTCAACGGTGTGTTAACTTATTGGCACCACCATTAGGATGTGGCCGCCCAGGTTCTT AGTCTGGCGACGTCGAAGAGTATGACTGGGGCAAACATAATCATTGATGCTGGATATACGCTATAG |