© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2347.t1 |
| Gene name | |
| Location | scaffold_02:2330505..2332279 |
| Strand | + |
| Gene length (bp) | 1774 |
| Transcript length (bp) | 1659 |
| Coding sequence length (bp) | 1659 |
| Protein length (aa) | 553 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00067 | p450 | Cytochrome P450 | 7.5E-55 | 57 | 505 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Yes |
| GO:0004497 | monooxygenase activity | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.08 | 0.84 | 5.31 |
| 5d_25C | Five days - 25 degrees Celsius | 3.93 | 1.20 | 6.66 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.80 | 0.72 | 4.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.02 | 1.63 | 8.40 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.13 | 0.46 | 3.81 |
| 7d_30C | Seven days - 30 degrees Celsius | 6.73 | 2.57 | 10.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.615646 | no |
| 3d_25C | 7d_25C | 0.876291 | no |
| 3d_25C | 7d_15C | 0.458726 | no |
| 3d_25C | 7d_30C | 0.036939 | yes |
| 3d_25C | 10d_25C | 0.241375 | no |
| 5d_25C | 7d_25C | 0.447444 | no |
| 5d_25C | 7d_15C | 0.146785 | no |
| 5d_25C | 7d_30C | 0.133313 | no |
| 5d_25C | 10d_25C | 0.600158 | no |
| 7d_25C | 7d_15C | 0.610478 | no |
| 7d_25C | 7d_30C | 0.018838 | yes |
| 7d_25C | 10d_25C | 0.152437 | no |
| 7d_15C | 7d_30C | 0.003625 | yes |
| 7d_15C | 10d_25C | 0.033923 | yes |
| 7d_30C | 10d_25C | 0.482989 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2347.t1 MDTKVQEVLSPLSYRLIQLVGHHNTLPVLVALGVVLVSYVIYNVAFATDIPYIKGLPEIPGAVPVFGHLLKLGED HATVCEKWWRQYNQPVFQIKLGNTRAVVVNSFDDCKKMLLGNQNAVIDRPKLYTFHGVISSTQGFTIGSSPWDES CKKKRKAAGTALGRPALRNYFPMFDLESFCIVRDMKGDSRNGELEVDVRPYIQRYALNTTLTLCYGIRMDEVYDE LLREILHVGSAISLLRSASENLQDYVPFLRYLPNNEKNARSQELRDRRDAYLNLLLDKVRDMIKRGVDKPCISAA ILKDMESKLTGVEVSSICLSLVSGGFETIPGTLTSCIGSLCTAEGQIWQDRAYEDIKRHFPDMRDAWTASFVEEK IPYINAIVKEAGRYYTVSSMSLPRKTVTEVNWNGAIIPPKTMILINAQAGNHDVDHYGPDAGRFDPERWLKSIDP PAEAEVNGLGHLSFGTGSRACSGQYIASRLVYTALVRILSSYKIVASETHPPNTDYVDYNQFKTALVAIPREFKV RLIPRDSNMTSECLDAAEQRTKEHYKE* |
| Coding | >Pro_DTO377G3_2|g2347.t1 ATGGATACGAAGGTCCAAGAGGTTCTCAGTCCACTGAGCTATCGCTTGATCCAGCTTGTGGGGCATCATAATACA CTGCCTGTGCTAGTTGCTCTGGGCGTAGTGCTAGTTTCCTATGTCATATACAATGTCGCCTTTGCAACCGACATC CCTTATATCAAGGGGCTGCCGGAGATCCCAGGCGCGGTTCCCGTCTTTGGTCATTTGTTAAAGCTCGGCGAGGAC CACGCCACCGTGTGCGAGAAATGGTGGCGCCAGTACAACCAGCCCGTTTTCCAGATCAAGCTGGGTAACACCCGG GCCGTGGTGGTCAATTCCTTTGACGACTGCAAGAAGATGCTCCTGGGCAACCAGAACGCCGTCATCGACCGGCCC AAGCTGTACACCTTCCACGGCGTCATCAGCAGTACCCAGGGCTTCACCATCGGCTCATCCCCCTGGGACGAGTCC TGCAAGAAGAAGCGCAAGGCGGCCGGCACGGCGCTCGGCCGGCCAGCGCTGCGCAACTACTTTCCCATGTTCGAC CTTGAGAGCTTCTGCATCGTGCGTGATATGAAGGGCGACAGCCGCAACGGCGAGCTCGAGGTTGACGTGCGACCT TACATCCAGCGTTACGCGCTCAACACCACCCTAACGCTCTGCTACGGCATCCGCATGGACGAGGTCTACGACGAG CTGCTGCGCGAGATCCTGCACGTCGGCTCCGCCATCTCGCTGCTGCGCAGCGCGTCCGAGAACCTGCAGGACTAC GTGCCCTTCCTGCGCTACCTACCTAACAACGAAAAGAACGCGCGCTCCCAGGAGCTGCGTGACCGGCGCGACGCC TACCTAAACTTGCTTCTGGACAAGGTCCGCGACATGATCAAGCGTGGCGTCGACAAGCCCTGCATCTCGGCGGCC ATCCTCAAGGACATGGAGAGCAAGCTCACTGGCGTCGAAGTCTCGTCCATCTGCCTGTCGCTCGTATCGGGCGGT TTCGAGACCATCCCAGGTACCCTGACGTCGTGCATCGGCTCTCTGTGCACGGCCGAGGGCCAGATTTGGCAGGAC CGTGCGTACGAGGACATCAAGCGCCACTTCCCGGATATGCGCGACGCCTGGACAGCCTCCTTCGTTGAGGAGAAG ATACCTTACATCAACGCCATAGTCAAGGAAGCCGGCCGGTACTACACCGTCAGCTCCATGAGTCTGCCGAGGAAG ACAGTCACCGAGGTCAACTGGAACGGGGCCATCATCCCGCCCAAGACGATGATCTTGATTAACGCGCAAGCCGGC AACCACGATGTCGACCATTACGGCCCCGATGCGGGACGCTTCGATCCAGAGAGATGGCTCAAGAGCATTGACCCG CCGGCCGAGGCTGAGGTCAATGGGCTCGGCCACCTCAGCTTCGGAACGGGCTCCCGGGCCTGCTCGGGACAGTAT ATCGCATCCAGGCTTGTGTACACCGCGCTAGTCCGGATCTTGTCGTCGTACAAGATTGTGGCGAGCGAGACGCAC CCGCCCAACACGGACTACGTGGATTACAACCAGTTCAAGACAGCCCTGGTGGCTATCCCTAGGGAGTTCAAGGTC CGGCTCATCCCGAGAGACTCGAACATGACGAGCGAATGCTTGGATGCAGCCGAGCAGAGGACGAAGGAGCACTAC AAGGAGTAG |
| Transcript | >Pro_DTO377G3_2|g2347.t1 ATGGATACGAAGGTCCAAGAGGTTCTCAGTCCACTGAGCTATCGCTTGATCCAGCTTGTGGGGCATCATAATACA CTGCCTGTGCTAGTTGCTCTGGGCGTAGTGCTAGTTTCCTATGTCATATACAATGTCGCCTTTGCAACCGACATC CCTTATATCAAGGGGCTGCCGGAGATCCCAGGCGCGGTTCCCGTCTTTGGTCATTTGTTAAAGCTCGGCGAGGAC CACGCCACCGTGTGCGAGAAATGGTGGCGCCAGTACAACCAGCCCGTTTTCCAGATCAAGCTGGGTAACACCCGG GCCGTGGTGGTCAATTCCTTTGACGACTGCAAGAAGATGCTCCTGGGCAACCAGAACGCCGTCATCGACCGGCCC AAGCTGTACACCTTCCACGGCGTCATCAGCAGTACCCAGGGCTTCACCATCGGCTCATCCCCCTGGGACGAGTCC TGCAAGAAGAAGCGCAAGGCGGCCGGCACGGCGCTCGGCCGGCCAGCGCTGCGCAACTACTTTCCCATGTTCGAC CTTGAGAGCTTCTGCATCGTGCGTGATATGAAGGGCGACAGCCGCAACGGCGAGCTCGAGGTTGACGTGCGACCT TACATCCAGCGTTACGCGCTCAACACCACCCTAACGCTCTGCTACGGCATCCGCATGGACGAGGTCTACGACGAG CTGCTGCGCGAGATCCTGCACGTCGGCTCCGCCATCTCGCTGCTGCGCAGCGCGTCCGAGAACCTGCAGGACTAC GTGCCCTTCCTGCGCTACCTACCTAACAACGAAAAGAACGCGCGCTCCCAGGAGCTGCGTGACCGGCGCGACGCC TACCTAAACTTGCTTCTGGACAAGGTCCGCGACATGATCAAGCGTGGCGTCGACAAGCCCTGCATCTCGGCGGCC ATCCTCAAGGACATGGAGAGCAAGCTCACTGGCGTCGAAGTCTCGTCCATCTGCCTGTCGCTCGTATCGGGCGGT TTCGAGACCATCCCAGGTACCCTGACGTCGTGCATCGGCTCTCTGTGCACGGCCGAGGGCCAGATTTGGCAGGAC CGTGCGTACGAGGACATCAAGCGCCACTTCCCGGATATGCGCGACGCCTGGACAGCCTCCTTCGTTGAGGAGAAG ATACCTTACATCAACGCCATAGTCAAGGAAGCCGGCCGGTACTACACCGTCAGCTCCATGAGTCTGCCGAGGAAG ACAGTCACCGAGGTCAACTGGAACGGGGCCATCATCCCGCCCAAGACGATGATCTTGATTAACGCGCAAGCCGGC AACCACGATGTCGACCATTACGGCCCCGATGCGGGACGCTTCGATCCAGAGAGATGGCTCAAGAGCATTGACCCG CCGGCCGAGGCTGAGGTCAATGGGCTCGGCCACCTCAGCTTCGGAACGGGCTCCCGGGCCTGCTCGGGACAGTAT ATCGCATCCAGGCTTGTGTACACCGCGCTAGTCCGGATCTTGTCGTCGTACAAGATTGTGGCGAGCGAGACGCAC CCGCCCAACACGGACTACGTGGATTACAACCAGTTCAAGACAGCCCTGGTGGCTATCCCTAGGGAGTTCAAGGTC CGGCTCATCCCGAGAGACTCGAACATGACGAGCGAATGCTTGGATGCAGCCGAGCAGAGGACGAAGGAGCACTAC AAGGAGTAG |
| Gene | >Pro_DTO377G3_2|g2347.t1 ATGGATACGAAGGTCCAAGAGGTTCTCAGTCCACTGAGCTATCGCTTGATCCAGCTTGTGGGGCATCATAATACA CTGCCTGTGCTAGTTGCTCTGGGCGTAGTGCTAGTTTCCTATGTCATATACAATGTAAGACAAACCATGGGAACC GAGTGTGACATGATGACTGACATACAATAGGTCGCCTTTGCAACCGACATCCCTTATATCAAGGGGCTGCCGGAG ATCCCAGGCGCGGTTCCCGTCTTTGGTCATTTGTTAAAGCTCGGCGAGGACCACGCCACCGTGTGCGAGAAATGG TGGCGCCAGTACAACCAGCCCGTTTTCCAGATCAAGCTGGGTAACACCCGGGCCGTGGTGGTCAATTCCTTTGAC GACTGCAAGAAGATGCTCCTGGGCAACCAGAACGCCGTCATCGACCGGCCCAAGCTGTACACCTTCCACGGCGTC ATCAGCAGTACCCAGGGCTTCACCATCGGCTCATCCCCCTGGGACGAGTCCTGCAAGAAGAAGCGCAAGGCGGCC GGCACGGCGCTCGGCCGGCCAGCGCTGCGCAACTACTTTCCCATGTTCGACCTTGAGAGCTTCTGCATCGTGCGT GATATGAAGGGCGACAGCCGCAACGGCGAGCTCGAGGTTGACGTGCGACCTTACATCCAGCGTTACGCGCTCAAC ACCACCCTAACGCTCTGCTACGGCATCCGCATGGACGAGGTCTACGACGAGCTGCTGCGCGAGATCCTGCACGTC GGCTCCGCCATCTCGCTGCTGCGCAGCGCGTCCGAGAACCTGCAGGACTACGTGCCCTTCCTGCGCTACCTACCT AACAACGAAAAGAACGCGCGCTCCCAGGAGCTGCGTGACCGGCGCGACGCCTACCTAAACTTGCTTCTGGACAAG GTCCGCGACATGATCAAGCGTGGCGTCGACAAGCCCTGCATCTCGGCGGCCATCCTCAAGGACATGGAGAGCAAG CTCACTGGCGTCGAAGTCTCGTCCATCTGCCTGTCGCTCGTATCGGGCGGTTTCGAGACCATCCCAGGTACCCTG ACGTCGTGCATCGGCTCTCTGTGCACGGCCGAGGGCCAGATTTGGCAGGACCGTGCGTACGAGGACATCAAGCGC CACTTCCCGGATATGCGCGACGCCTGGACAGCCTCCTTCGTTGAGGAGAAGATACCTTACATCAACGCCATAGTC AAGGAAGCCGGCCGGTACTACACCGTCAGCTCCATGAGTCTGCCGAGGAAGACAGTCACCGAGGTCAACTGGAAC GGGGCCATCATCCCGCCCAAGACGATGATCTTGATTAACGCGCAAGCCGGCAACCACGGTAAGTGATCAATCACA TGACCTTTTTATGAAGAAACACGACGCTGACATAGTACTACCTGCAGATGTCGACCATTACGGCCCCGATGCGGG ACGCTTCGATCCAGAGAGATGGCTCAAGAGCATTGACCCGCCGGCCGAGGCTGAGGTCAATGGGCTCGGCCACCT CAGCTTCGGAACGGGCTCCCGGGCCTGCTCGGGACAGTATATCGCATCCAGGCTTGTGTACACCGCGCTAGTCCG GATCTTGTCGTCGTACAAGATTGTGGCGAGCGAGACGCACCCGCCCAACACGGACTACGTGGATTACAACCAGTT CAAGACAGCCCTGGTGGCTATCCCTAGGGAGTTCAAGGTCCGGCTCATCCCGAGAGACTCGAACATGACGAGCGA ATGCTTGGATGCAGCCGAGCAGAGGACGAAGGAGCACTACAAGGAGTAG |