© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g2337.t1 |
| Gene name | |
| Location | scaffold_02:2301236..2302055 |
| Strand | - |
| Gene length (bp) | 819 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 819 |
| Protein length (aa) | 273 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 16 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 163 | 185 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.40 | 0.00 | 1.05 |
| 5d_25C | Five days - 25 degrees Celsius | 0.00 | 0.00 | 0.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.00 | 0.00 | 0.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.04 | 0.00 | 0.23 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.00 | 0.00 | 0.00 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.97 | 0.75 | 9.19 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.014971 | yes |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.356374 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2337.t1 MIPLYALFLIPLVNGWTFRYTNATNATEIARGQDSQNCTNSPIGKEKLFTWDPEGSGLCVSIYRDLKCDSRAGYA CEIWRKNASEAFAAFDVLPETEIDAKHQTSTLAVSTSTSATTSASASISTPSSVSSELVSAIPTGSTAVSTANSD SGFSDSSLSGGAIAGIVVGVVAAVAIIVAFVVILIRKRNKKNTAVANQHGGYEPHEADATGSSISGTTAVVEKAA DSAVRPFRPPPGSKIIELVGDEGSAELGSSPISEMDGNNIKKGFNRF* |
| Coding | >Pro_DTO377G3_2|g2337.t1 ATGATACCATTATATGCACTTTTCCTAATTCCCCTGGTGAATGGATGGACCTTCCGCTACACCAACGCGACCAAT GCCACTGAAATAGCCCGCGGCCAAGATTCACAGAACTGCACAAATTCCCCTATTGGTAAAGAAAAGCTTTTTACC TGGGATCCCGAGGGATCTGGCCTATGTGTCTCGATATACCGCGACCTCAAGTGTGACTCCAGGGCGGGATATGCA TGCGAAATATGGAGAAAGAATGCCAGTGAAGCATTTGCGGCTTTTGATGTCCTGCCTGAGACGGAGATTGATGCC AAACACCAAACATCTACACTCGCGGTATCGACGTCTACATCCGCTACGACATCCGCATCTGCATCCATATCCACA CCTTCATCTGTGTCTTCAGAATTGGTATCCGCAATCCCCACCGGGTCCACCGCAGTGTCTACAGCCAATTCTGAC AGCGGCTTCTCTGATTCATCGCTCTCCGGTGGTGCTATTGCAGGCATCGTGGTTGGCGTCGTAGCTGCGGTTGCT ATTATAGTCGCTTTCGTTGTCATTCTCATCAGAAAAAGGAACAAAAAGAACACCGCGGTTGCCAACCAGCATGGT GGTTATGAGCCCCATGAGGCGGATGCTACTGGATCATCGATAAGTGGTACTACCGCGGTTGTGGAGAAAGCAGCA GACTCGGCCGTGCGCCCATTCAGGCCTCCCCCTGGGTCCAAGATTATTGAGTTGGTTGGAGATGAAGGAAGTGCT GAACTGGGCAGCAGCCCCATAAGTGAGATGGATGGAAACAATATCAAGAAAGGTTTCAACCGGTTCTAA |
| Transcript | >Pro_DTO377G3_2|g2337.t1 ATGATACCATTATATGCACTTTTCCTAATTCCCCTGGTGAATGGATGGACCTTCCGCTACACCAACGCGACCAAT GCCACTGAAATAGCCCGCGGCCAAGATTCACAGAACTGCACAAATTCCCCTATTGGTAAAGAAAAGCTTTTTACC TGGGATCCCGAGGGATCTGGCCTATGTGTCTCGATATACCGCGACCTCAAGTGTGACTCCAGGGCGGGATATGCA TGCGAAATATGGAGAAAGAATGCCAGTGAAGCATTTGCGGCTTTTGATGTCCTGCCTGAGACGGAGATTGATGCC AAACACCAAACATCTACACTCGCGGTATCGACGTCTACATCCGCTACGACATCCGCATCTGCATCCATATCCACA CCTTCATCTGTGTCTTCAGAATTGGTATCCGCAATCCCCACCGGGTCCACCGCAGTGTCTACAGCCAATTCTGAC AGCGGCTTCTCTGATTCATCGCTCTCCGGTGGTGCTATTGCAGGCATCGTGGTTGGCGTCGTAGCTGCGGTTGCT ATTATAGTCGCTTTCGTTGTCATTCTCATCAGAAAAAGGAACAAAAAGAACACCGCGGTTGCCAACCAGCATGGT GGTTATGAGCCCCATGAGGCGGATGCTACTGGATCATCGATAAGTGGTACTACCGCGGTTGTGGAGAAAGCAGCA GACTCGGCCGTGCGCCCATTCAGGCCTCCCCCTGGGTCCAAGATTATTGAGTTGGTTGGAGATGAAGGAAGTGCT GAACTGGGCAGCAGCCCCATAAGTGAGATGGATGGAAACAATATCAAGAAAGGTTTCAACCGGTTCTAA |
| Gene | >Pro_DTO377G3_2|g2337.t1 ATGATACCATTATATGCACTTTTCCTAATTCCCCTGGTGAATGGATGGACCTTCCGCTACACCAACGCGACCAAT GCCACTGAAATAGCCCGCGGCCAAGATTCACAGAACTGCACAAATTCCCCTATTGGTAAAGAAAAGCTTTTTACC TGGGATCCCGAGGGATCTGGCCTATGTGTCTCGATATACCGCGACCTCAAGTGTGACTCCAGGGCGGGATATGCA TGCGAAATATGGAGAAAGAATGCCAGTGAAGCATTTGCGGCTTTTGATGTCCTGCCTGAGACGGAGATTGATGCC AAACACCAAACATCTACACTCGCGGTATCGACGTCTACATCCGCTACGACATCCGCATCTGCATCCATATCCACA CCTTCATCTGTGTCTTCAGAATTGGTATCCGCAATCCCCACCGGGTCCACCGCAGTGTCTACAGCCAATTCTGAC AGCGGCTTCTCTGATTCATCGCTCTCCGGTGGTGCTATTGCAGGCATCGTGGTTGGCGTCGTAGCTGCGGTTGCT ATTATAGTCGCTTTCGTTGTCATTCTCATCAGAAAAAGGAACAAAAAGAACACCGCGGTTGCCAACCAGCATGGT GGTTATGAGCCCCATGAGGCGGATGCTACTGGATCATCGATAAGTGGTACTACCGCGGTTGTGGAGAAAGCAGCA GACTCGGCCGTGCGCCCATTCAGGCCTCCCCCTGGGTCCAAGATTATTGAGTTGGTTGGAGATGAAGGAAGTGCT GAACTGGGCAGCAGCCCCATAAGTGAGATGGATGGAAACAATATCAAGAAAGGTTTCAACCGGTTCTAA |