© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2325.t1 |
| Gene name | |
| Location | scaffold_02:2273536..2274264 |
| Strand | + |
| Gene length (bp) | 728 |
| Transcript length (bp) | 669 |
| Coding sequence length (bp) | 669 |
| Protein length (aa) | 223 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02798 | GST_N | Glutathione S-transferase, N-terminal domain | 7.2E-10 | 7 | 85 |
| PF13409 | GST_N_2 | Glutathione S-transferase, N-terminal domain | 1.1E-07 | 17 | 84 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0006749 | glutathione metabolic process | Yes |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006575 | cellular modified amino acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 852.24 | 498.11 | 1206.37 |
| 5d_25C | Five days - 25 degrees Celsius | 1139.17 | 639.92 | 1638.43 |
| 7d_25C | Seven days - 25 degrees Celsius | 1136.40 | 634.31 | 1638.49 |
| 10d_25C | Ten days - 25 degrees Celsius | 1872.36 | 1004.83 | 2739.89 |
| 7d_15C | Seven days - 15 degrees Celsius | 1677.43 | 870.05 | 2484.80 |
| 7d_30C | Seven days - 30 degrees Celsius | 937.79 | 530.30 | 1345.27 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.237292 | no |
| 3d_25C | 7d_25C | 0.250917 | no |
| 3d_25C | 7d_15C | 0.004840 | yes |
| 3d_25C | 7d_30C | 0.764423 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.994373 | no |
| 5d_25C | 7d_15C | 0.120895 | no |
| 5d_25C | 7d_30C | 0.486244 | no |
| 5d_25C | 10d_25C | 0.031978 | yes |
| 7d_25C | 7d_15C | 0.122346 | no |
| 7d_25C | 7d_30C | 0.502254 | no |
| 7d_25C | 10d_25C | 0.031312 | yes |
| 7d_15C | 7d_30C | 0.014377 | yes |
| 7d_15C | 10d_25C | 0.756541 | no |
| 7d_30C | 10d_25C | 0.002761 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2325.t1 MAAHIKPLILHAHATGPNPVKIAMALEALHVPFEVKLWDFSDNPKSGVKGTEFLKINENGRVPAIEDPNTGVVSW ESGACMNYVRRVYDNGNTIGPSGDSAQDLVDFEKWEYFLLTTLGPMTGQATWFKNYNPQKNDDALQRYTAQSYRC YDVLEGQLKKTHGESIVPSRVTAVDYHFEPWVRASSYAGLSLDNYPLIKKWLGLMATREEVQEAYVKVQGKK* |
| Coding | >Pro_DTO377G3_2|g2325.t1 ATGGCCGCACATATCAAGCCACTCATCCTTCACGCCCATGCCACGGGCCCAAACCCAGTCAAAATAGCCATGGCA CTCGAGGCGCTCCATGTCCCATTCGAAGTGAAGTTGTGGGACTTTAGCGACAATCCGAAAAGTGGCGTGAAGGGC ACAGAATTTCTCAAAATCAACGAGAACGGGCGCGTTCCTGCCATCGAAGATCCCAACACCGGTGTCGTCTCGTGG GAATCCGGGGCATGCATGAACTACGTCCGCCGTGTTTATGACAATGGTAATACGATTGGTCCGTCTGGCGACTCG GCTCAAGATCTTGTGGATTTTGAAAAGTGGGAGTATTTCTTGTTGACAACGCTTGGCCCCATGACAGGACAGGCA ACCTGGTTTAAAAACTATAACCCACAAAAGAATGATGATGCACTCCAGCGATATACAGCGCAGAGCTATCGCTGC TACGATGTTCTTGAGGGTCAGTTGAAAAAGACTCACGGTGAAAGCATTGTACCCAGTCGGGTCACTGCCGTTGAT TATCATTTTGAGCCTTGGGTACGCGCCTCGTCCTACGCTGGCCTTTCACTTGACAACTATCCTTTGATCAAGAAG TGGCTGGGGCTTATGGCGACACGGGAAGAAGTCCAGGAAGCATACGTCAAGGTTCAAGGTAAAAAGTGA |
| Transcript | >Pro_DTO377G3_2|g2325.t1 ATGGCCGCACATATCAAGCCACTCATCCTTCACGCCCATGCCACGGGCCCAAACCCAGTCAAAATAGCCATGGCA CTCGAGGCGCTCCATGTCCCATTCGAAGTGAAGTTGTGGGACTTTAGCGACAATCCGAAAAGTGGCGTGAAGGGC ACAGAATTTCTCAAAATCAACGAGAACGGGCGCGTTCCTGCCATCGAAGATCCCAACACCGGTGTCGTCTCGTGG GAATCCGGGGCATGCATGAACTACGTCCGCCGTGTTTATGACAATGGTAATACGATTGGTCCGTCTGGCGACTCG GCTCAAGATCTTGTGGATTTTGAAAAGTGGGAGTATTTCTTGTTGACAACGCTTGGCCCCATGACAGGACAGGCA ACCTGGTTTAAAAACTATAACCCACAAAAGAATGATGATGCACTCCAGCGATATACAGCGCAGAGCTATCGCTGC TACGATGTTCTTGAGGGTCAGTTGAAAAAGACTCACGGTGAAAGCATTGTACCCAGTCGGGTCACTGCCGTTGAT TATCATTTTGAGCCTTGGGTACGCGCCTCGTCCTACGCTGGCCTTTCACTTGACAACTATCCTTTGATCAAGAAG TGGCTGGGGCTTATGGCGACACGGGAAGAAGTCCAGGAAGCATACGTCAAGGTTCAAGGTAAAAAGTGA |
| Gene | >Pro_DTO377G3_2|g2325.t1 ATGGCCGCACATATCAAGCCACTCATCCTTCACGCCCATGCCACGGGCCCAAACCCAGTCAAAATAGCCATGGCA CTCGAGGCGCTCCATGTCCCATTCGAAGTGAAGTTGTGGGACTTTAGCGACAATCCGAAAAGTGGCGTGAAGGGC ACAGAATTTCTCAAAATCAACGAGAACGGGCGCGTTCCTGCCATCGAAGATCCCAACACCGGTGTCGTCTCGTGG GAATCCGGGGCATGCATGAACTACGTCCGCCGTGTTTATGACAATGGTAATACGATTGGTCCGTCTGGCGACTCG GCTCAAGATCTTGTGGATTTTGAAAAGTGGGAGTATTTCTTGTTGACAACGCTTGGCCCCATGACAGGACAGGCA ACCTGGTTTAAGTCAGTGACTGTGAATTCGGAAGAAATCCCCGGTTGATACTTACTCTTTATTTGTTCAGAAACT ATAACCCACAAAAGAATGATGATGCACTCCAGCGATATACAGCGCAGAGCTATCGCTGCTACGATGTTCTTGAGG GTCAGTTGAAAAAGACTCACGGTGAAAGCATTGTACCCAGTCGGGTCACTGCCGTTGATTATCATTTTGAGCCTT GGGTACGCGCCTCGTCCTACGCTGGCCTTTCACTTGACAACTATCCTTTGATCAAGAAGTGGCTGGGGCTTATGG CGACACGGGAAGAAGTCCAGGAAGCATACGTCAAGGTTCAAGGTAAAAAGTGA |