© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2324.t1 |
| Gene name | |
| Location | scaffold_02:2271521..2272628 |
| Strand | - |
| Gene length (bp) | 1107 |
| Transcript length (bp) | 888 |
| Coding sequence length (bp) | 888 |
| Protein length (aa) | 296 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01301 | Glyco_hydro_35 | Glycosyl hydrolases family 35 | 6.2E-29 | 95 | 282 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.70 | 6.86 | 26.54 |
| 5d_25C | Five days - 25 degrees Celsius | 27.39 | 12.56 | 42.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 26.47 | 12.50 | 40.45 |
| 10d_25C | Ten days - 25 degrees Celsius | 48.12 | 25.82 | 70.43 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.80 | 7.44 | 30.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 32.80 | 15.85 | 49.76 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.115636 | no |
| 3d_25C | 7d_25C | 0.148751 | no |
| 3d_25C | 7d_15C | 0.795321 | no |
| 3d_25C | 7d_30C | 0.021417 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.943344 | no |
| 5d_25C | 7d_15C | 0.277685 | no |
| 5d_25C | 7d_30C | 0.618471 | no |
| 5d_25C | 10d_25C | 0.038776 | yes |
| 7d_25C | 7d_15C | 0.328419 | no |
| 7d_25C | 7d_30C | 0.536545 | no |
| 7d_25C | 10d_25C | 0.025858 | yes |
| 7d_15C | 7d_30C | 0.072335 | no |
| 7d_15C | 10d_25C | 0.001804 | yes |
| 7d_30C | 10d_25C | 0.162701 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2324.t1 MLFKTSPLITLLSAVASLVLASIKSHTPPQKKGATRSSGVGPTFYNNTRRAAHDLSWRISPLRLPVPGLWLDVSK NKEESWTRYHRRDMELRWGFDVASQAGLYLIARPGPYINAETTAGGIPGWVLREKGVIPSDDPEYLNATANYISI LGRIIDRGQITNGGPVIMVQPENKYSTWLGVTDFPTEMNRNYMVYVEEQLLDEGLTVPSIVNDNLVMGYFAPGSG KGAVDINAIDAYPLRYNCANFTVLPNYKFPYDWQVTHRRQSPTTPFRLLSSKEGLMKDGEGWSKTCAAGW* |
| Coding | >Pro_DTO377G3_2|g2324.t1 ATGTTGTTCAAAACGTCACCATTGATAACTCTGCTTTCTGCAGTTGCATCATTGGTTTTAGCGTCTATTAAAAGC CATACTCCACCTCAAAAAAAAGGGGCTACAAGATCTAGTGGCGTGGGACCAACATTCTATAATAATACGCGGAGA GCGGCTCATGATCTTTCCTGGCGAATTTCACCCCTTCGACTCCCAGTCCCAGGTCTTTGGCTCGACGTGTCAAAA AACAAAGAGGAATCCTGGACACGTTATCACCGACGGGATATGGAGCTTAGATGGGGTTTTGACGTAGCAAGCCAA GCTGGCTTATACCTCATCGCTCGACCGGGACCGTACATCAACGCAGAAACAACTGCTGGTGGAATACCTGGGTGG GTTCTACGAGAAAAGGGGGTTATTCCATCCGACGATCCTGAATACCTGAATGCAACAGCAAATTACATATCGATA CTGGGCCGGATCATTGACAGGGGACAGATCACAAATGGTGGCCCAGTGATCATGGTTCAGCCAGAGAACAAGTAC TCCACCTGGCTTGGAGTGACTGACTTCCCGACTGAGATGAATCGGAATTATATGGTATACGTTGAAGAGCAGCTG CTTGATGAAGGTCTTACTGTTCCTTCAATTGTGAATGATAACTTGGTTATGGGATACTTCGCGCCGGGGTCAGGG AAGGGCGCAGTCGATATCAACGCTATTGATGCGTACCCCTTGCGCTATAATTGCGCAAATTTTACTGTTTTGCCT AATTACAAGTTTCCATATGACTGGCAAGTCACGCACAGACGGCAGAGTCCAACGACGCCTTTTCGATTGCTGAGT TCCAAGGAGGGTCTGATGAAGGATGGGGAGGGCTGGTCCAAGACATGTGCGGCCGGTTGGTAA |
| Transcript | >Pro_DTO377G3_2|g2324.t1 ATGTTGTTCAAAACGTCACCATTGATAACTCTGCTTTCTGCAGTTGCATCATTGGTTTTAGCGTCTATTAAAAGC CATACTCCACCTCAAAAAAAAGGGGCTACAAGATCTAGTGGCGTGGGACCAACATTCTATAATAATACGCGGAGA GCGGCTCATGATCTTTCCTGGCGAATTTCACCCCTTCGACTCCCAGTCCCAGGTCTTTGGCTCGACGTGTCAAAA AACAAAGAGGAATCCTGGACACGTTATCACCGACGGGATATGGAGCTTAGATGGGGTTTTGACGTAGCAAGCCAA GCTGGCTTATACCTCATCGCTCGACCGGGACCGTACATCAACGCAGAAACAACTGCTGGTGGAATACCTGGGTGG GTTCTACGAGAAAAGGGGGTTATTCCATCCGACGATCCTGAATACCTGAATGCAACAGCAAATTACATATCGATA CTGGGCCGGATCATTGACAGGGGACAGATCACAAATGGTGGCCCAGTGATCATGGTTCAGCCAGAGAACAAGTAC TCCACCTGGCTTGGAGTGACTGACTTCCCGACTGAGATGAATCGGAATTATATGGTATACGTTGAAGAGCAGCTG CTTGATGAAGGTCTTACTGTTCCTTCAATTGTGAATGATAACTTGGTTATGGGATACTTCGCGCCGGGGTCAGGG AAGGGCGCAGTCGATATCAACGCTATTGATGCGTACCCCTTGCGCTATAATTGCGCAAATTTTACTGTTTTGCCT AATTACAAGTTTCCATATGACTGGCAAGTCACGCACAGACGGCAGAGTCCAACGACGCCTTTTCGATTGCTGAGT TCCAAGGAGGGTCTGATGAAGGATGGGGAGGGCTGGTCCAAGACATGTGCGGCCGGTTGGTAA |
| Gene | >Pro_DTO377G3_2|g2324.t1 ATGTTGTTCAAAACGTCACCATTGATAACTCTGCTTTCTGCAGTTGCATCATTGGTTTTAGCGTCTATTAAAAGC CATACTCCACCTCAAAAAAAAGGGGCTACAAGATCTAGTGAGAATAGTATCACCCTGATAGTATCATTTCACTAA CGCATTAGGGATAGGTGGCGTGGGACCAACATTCTATAATAATACGCGGAGAGCGGCTCATGATCTTTCCTGGCG AATTTCACCCCTTCGACTCCCAGTCCCAGGTCTTTGGCTCGACGTGTCAAAAAACAAAGAGTATGGGCTTCACCG GGGTCTCATTCTACATTGATTGGAGCCTTGTAGAAGGGAATCCTGGACACGTTATCACCGACGGGATATGGAGCT TAGATGGGGTTTTGACGTAGCAAGCCAAGCTGGCTTATACCTCATCGCTCGACCGGGACCGTACATCAACGCAGA AACAACTGCTGGTGGAATACCTGGGTGGGTTCTACGAGAAAAGGGGGTTATTCCATCCGACGATCCTGAATACCT GAATGCAACAGCAAATTACATATCGATACTGGGCCGGATCATTGACAGGGGACAGATCACAAATGGTGGCCCAGT GATCATGGTTCAGCCAGAGAACAAGTACTCCACCTGGCTTGGAGTGACTGACTTCCCGACTGAGATGAATCGGAA TTATATGGTATACGTTGAAGAGCAGCTGCTTGATGAAGGTCTTACTGTTCCTTCAATTGTGAATGATAACTTGGT TATGGGATACTTCGCGCCGGGGTCAGGGAAGGGCGCAGTCGATATCAACGCTATTGATGCGTACCCCTTGCGCTA TAATTGTGAGCTTGTTTCCAACGTACCTCAATGTTATACGTGCTGTAAGGCTGACAGATTCCCCCCCTTAGGCGC AAATTTTACTGTTTTGCCTAATTACAAGTTTCCATATGACTGGCAAGTCACGCACAGACGGCAGAGTCCAACGAC GCCTTTTCGATTGCTGAGTTCCAAGGAGGGTCTGATGAAGGATGGTAGGTCGATTCTTGCTTTTACCATATGAAA GGAACTAATGTAATTATAGGGGAGGGCTGGTCCAAGACATGTGCGGCCGGTTGGTAA |