© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2320.t1 |
| Gene name | |
| Location | scaffold_02:2261781..2263068 |
| Strand | + |
| Gene length (bp) | 1287 |
| Transcript length (bp) | 1287 |
| Coding sequence length (bp) | 1287 |
| Protein length (aa) | 429 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11710 | Git3 | G protein-coupled glucose receptor regulating Gpa2 | 2.0E-29 | 36 | 233 |
| PF11970 | GPR_Gpa2_C | G protein-coupled glucose receptor regulating Gpa2 C-term | 2.3E-12 | 245 | 313 |
| PF05462 | Dicty_CAR | Slime mold cyclic AMP receptor | 7.5E-06 | 51 | 259 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 41 | 63 | 22 |
| 2 | 84 | 106 | 22 |
| 3 | 133 | 150 | 17 |
| 4 | 157 | 179 | 22 |
| 5 | 203 | 225 | 22 |
| 6 | 252 | 274 | 22 |
| 7 | 284 | 306 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.04 | 0.0 | 0.16 |
| 5d_25C | Five days - 25 degrees Celsius | 0.08 | 0.0 | 0.28 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.03 | 0.0 | 0.14 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.93 | 0.0 | 1.97 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.448854 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.187119 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.380358 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 5010 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2320.t1 MSAVILMGLIPGNKHSLAARLTTSAQLTIDPLSESHREGLIAISVLAFLSLIATSILLGFITYRLFFWRSSYTRY IGYNQYIILIYNLVLADFLQSLGFIISLQWILTNKIESSSAACFLQGLWLQIGDPSSGLFVFAIAFHTFLLVVCG RKMSHKFFVSFVVGIWAFVVLMLIIPLAQHGPGIFVLSGAWCWISDDYEIARLWTHYVWIFLAEFGTIILYAVMY FQLRRQISASAILDNSQLESLKRLRRVVGYMTIYPIIYLVLSLPIAASRMATSHGDTPNIVFFCCSGAIITSSGL VDVILYTLTRRNLIIDSEPSEDRSYHNYNGSKGKRGGNNLTTVTADPKHTVGGTYIDEIDRNGSTDNIVSPTAHG YHARDQEMMPIGQVYQETTIVITHEPAYPTEESSKRSSKENFPDRPSQSGWRG* |
| Coding | >Pro_DTO377G3_2|g2320.t1 ATGTCGGCAGTCATTCTCATGGGCTTGATACCCGGAAACAAGCACTCGTTGGCAGCTCGCTTGACCACCTCCGCT CAACTTACTATCGACCCTCTTTCAGAATCACATCGAGAAGGTCTAATAGCAATTTCAGTCTTGGCCTTCCTCTCT CTCATTGCAACATCAATACTCCTCGGTTTCATTACCTATCGACTTTTTTTCTGGCGCAGCAGTTATACACGTTAC ATCGGTTACAACCAGTACATCATTCTTATCTACAATCTTGTTCTGGCGGACTTTCTACAGTCACTTGGATTTATT ATTTCTCTACAATGGATCTTGACAAACAAGATTGAGTCTAGTTCCGCCGCATGCTTTCTTCAAGGGCTGTGGCTG CAAATTGGGGATCCCAGCAGTGGCCTGTTCGTGTTTGCTATCGCGTTCCACACATTCCTTTTAGTCGTCTGTGGA CGTAAAATGTCCCACAAGTTCTTCGTCTCATTCGTGGTCGGCATTTGGGCATTTGTTGTTTTAATGTTAATCATC CCATTAGCACAACACGGTCCTGGTATCTTTGTGCTTTCCGGGGCCTGGTGCTGGATCAGCGATGACTACGAAATC GCGCGGTTATGGACTCACTACGTCTGGATTTTCCTCGCCGAGTTCGGCACAATCATTCTCTACGCTGTGATGTAT TTCCAGCTGCGCCGACAGATTTCCGCCTCCGCTATCCTCGACAACAGCCAGCTGGAGAGTCTCAAGCGCCTACGC CGCGTCGTGGGCTACATGACCATCTACCCAATCATCTACCTCGTTCTATCGCTACCCATCGCCGCAAGCCGCATG GCCACAAGCCACGGCGATACACCCAACATTGTATTCTTCTGCTGTTCTGGGGCCATCATCACCAGCTCCGGGCTG GTCGACGTCATCCTGTACACTCTCACCCGCCGCAACTTGATCATCGACTCGGAACCCAGCGAAGACCGCTCCTAT CACAATTACAACGGCAGCAAAGGCAAACGAGGTGGGAACAACCTAACTACCGTTACGGCTGATCCCAAGCACACA GTCGGCGGCACTTACATTGATGAGATTGACCGCAACGGCTCGACGGATAACATCGTTTCACCCACCGCACATGGC TACCACGCCCGTGATCAGGAAATGATGCCGATCGGACAGGTCTACCAAGAAACCACCATTGTAATCACACACGAG CCTGCTTATCCCACCGAGGAATCCAGTAAGCGCTCTAGCAAGGAGAACTTCCCCGACCGTCCATCTCAATCAGGA TGGCGGGGATGA |
| Transcript | >Pro_DTO377G3_2|g2320.t1 ATGTCGGCAGTCATTCTCATGGGCTTGATACCCGGAAACAAGCACTCGTTGGCAGCTCGCTTGACCACCTCCGCT CAACTTACTATCGACCCTCTTTCAGAATCACATCGAGAAGGTCTAATAGCAATTTCAGTCTTGGCCTTCCTCTCT CTCATTGCAACATCAATACTCCTCGGTTTCATTACCTATCGACTTTTTTTCTGGCGCAGCAGTTATACACGTTAC ATCGGTTACAACCAGTACATCATTCTTATCTACAATCTTGTTCTGGCGGACTTTCTACAGTCACTTGGATTTATT ATTTCTCTACAATGGATCTTGACAAACAAGATTGAGTCTAGTTCCGCCGCATGCTTTCTTCAAGGGCTGTGGCTG CAAATTGGGGATCCCAGCAGTGGCCTGTTCGTGTTTGCTATCGCGTTCCACACATTCCTTTTAGTCGTCTGTGGA CGTAAAATGTCCCACAAGTTCTTCGTCTCATTCGTGGTCGGCATTTGGGCATTTGTTGTTTTAATGTTAATCATC CCATTAGCACAACACGGTCCTGGTATCTTTGTGCTTTCCGGGGCCTGGTGCTGGATCAGCGATGACTACGAAATC GCGCGGTTATGGACTCACTACGTCTGGATTTTCCTCGCCGAGTTCGGCACAATCATTCTCTACGCTGTGATGTAT TTCCAGCTGCGCCGACAGATTTCCGCCTCCGCTATCCTCGACAACAGCCAGCTGGAGAGTCTCAAGCGCCTACGC CGCGTCGTGGGCTACATGACCATCTACCCAATCATCTACCTCGTTCTATCGCTACCCATCGCCGCAAGCCGCATG GCCACAAGCCACGGCGATACACCCAACATTGTATTCTTCTGCTGTTCTGGGGCCATCATCACCAGCTCCGGGCTG GTCGACGTCATCCTGTACACTCTCACCCGCCGCAACTTGATCATCGACTCGGAACCCAGCGAAGACCGCTCCTAT CACAATTACAACGGCAGCAAAGGCAAACGAGGTGGGAACAACCTAACTACCGTTACGGCTGATCCCAAGCACACA GTCGGCGGCACTTACATTGATGAGATTGACCGCAACGGCTCGACGGATAACATCGTTTCACCCACCGCACATGGC TACCACGCCCGTGATCAGGAAATGATGCCGATCGGACAGGTCTACCAAGAAACCACCATTGTAATCACACACGAG CCTGCTTATCCCACCGAGGAATCCAGTAAGCGCTCTAGCAAGGAGAACTTCCCCGACCGTCCATCTCAATCAGGA TGGCGGGGATGA |
| Gene | >Pro_DTO377G3_2|g2320.t1 ATGTCGGCAGTCATTCTCATGGGCTTGATACCCGGAAACAAGCACTCGTTGGCAGCTCGCTTGACCACCTCCGCT CAACTTACTATCGACCCTCTTTCAGAATCACATCGAGAAGGTCTAATAGCAATTTCAGTCTTGGCCTTCCTCTCT CTCATTGCAACATCAATACTCCTCGGTTTCATTACCTATCGACTTTTTTTCTGGCGCAGCAGTTATACACGTTAC ATCGGTTACAACCAGTACATCATTCTTATCTACAATCTTGTTCTGGCGGACTTTCTACAGTCACTTGGATTTATT ATTTCTCTACAATGGATCTTGACAAACAAGATTGAGTCTAGTTCCGCCGCATGCTTTCTTCAAGGGCTGTGGCTG CAAATTGGGGATCCCAGCAGTGGCCTGTTCGTGTTTGCTATCGCGTTCCACACATTCCTTTTAGTCGTCTGTGGA CGTAAAATGTCCCACAAGTTCTTCGTCTCATTCGTGGTCGGCATTTGGGCATTTGTTGTTTTAATGTTAATCATC CCATTAGCACAACACGGTCCTGGTATCTTTGTGCTTTCCGGGGCCTGGTGCTGGATCAGCGATGACTACGAAATC GCGCGGTTATGGACTCACTACGTCTGGATTTTCCTCGCCGAGTTCGGCACAATCATTCTCTACGCTGTGATGTAT TTCCAGCTGCGCCGACAGATTTCCGCCTCCGCTATCCTCGACAACAGCCAGCTGGAGAGTCTCAAGCGCCTACGC CGCGTCGTGGGCTACATGACCATCTACCCAATCATCTACCTCGTTCTATCGCTACCCATCGCCGCAAGCCGCATG GCCACAAGCCACGGCGATACACCCAACATTGTATTCTTCTGCTGTTCTGGGGCCATCATCACCAGCTCCGGGCTG GTCGACGTCATCCTGTACACTCTCACCCGCCGCAACTTGATCATCGACTCGGAACCCAGCGAAGACCGCTCCTAT CACAATTACAACGGCAGCAAAGGCAAACGAGGTGGGAACAACCTAACTACCGTTACGGCTGATCCCAAGCACACA GTCGGCGGCACTTACATTGATGAGATTGACCGCAACGGCTCGACGGATAACATCGTTTCACCCACCGCACATGGC TACCACGCCCGTGATCAGGAAATGATGCCGATCGGACAGGTCTACCAAGAAACCACCATTGTAATCACACACGAG CCTGCTTATCCCACCGAGGAATCCAGTAAGCGCTCTAGCAAGGAGAACTTCCCCGACCGTCCATCTCAATCAGGA TGGCGGGGATGA |