© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2300.t1 |
| Gene name | |
| Location | scaffold_02:2192355..2193248 |
| Strand | + |
| Gene length (bp) | 893 |
| Transcript length (bp) | 831 |
| Coding sequence length (bp) | 831 |
| Protein length (aa) | 277 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.89 | 0.00 | 1.92 |
| 5d_25C | Five days - 25 degrees Celsius | 2.63 | 0.31 | 4.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.52 | 0.55 | 6.49 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.90 | 1.09 | 8.72 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.47 | 0.00 | 3.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 4.87 | 0.85 | 8.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.083230 | no |
| 3d_25C | 7d_25C | 0.030863 | yes |
| 3d_25C | 7d_15C | 0.520334 | no |
| 3d_25C | 7d_30C | 0.008469 | yes |
| 3d_25C | 10d_25C | 0.008469 | yes |
| 5d_25C | 7d_25C | 0.640977 | no |
| 5d_25C | 7d_15C | 0.363559 | no |
| 5d_25C | 7d_30C | 0.203824 | no |
| 5d_25C | 10d_25C | 0.202808 | no |
| 7d_25C | 7d_15C | 0.140183 | no |
| 7d_25C | 7d_30C | 0.555459 | no |
| 7d_25C | 10d_25C | 0.552638 | no |
| 7d_15C | 7d_30C | 0.041016 | yes |
| 7d_15C | 10d_25C | 0.039770 | yes |
| 7d_30C | 10d_25C | 0.992880 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2300.t1 MLFPLVRKIGLLAFGALVVVNPALGAKQPKLGSYDLTEAKMPLGPLKVTLDYSLATTWPTPLDLNGPKVKRNWQF STHMVFANSVDEISDGQLWQIARDAVDEMIADRSQYLIGPMAQPNAMGILAWGNEIILASSMKGAGSFSYDFLGG DNPVGRRLEMCQMLWGGDWSTTHKNNGNCAEEFAAFLYHRQNEVELKGQNPRVGTWVAGKAWKQIDPCGTGDADI WGCNLFVQGEGMRVMDTQTAPEPYTLASLAGGLTRQEQIQSCGGDPRVFFP* |
| Coding | >Pro_DTO377G3_2|g2300.t1 ATGCTCTTCCCACTCGTCCGAAAGATCGGTCTTTTGGCCTTTGGGGCCTTGGTCGTGGTCAACCCTGCACTTGGA GCAAAACAGCCCAAGCTAGGTAGTTACGACCTGACGGAAGCCAAAATGCCGCTTGGCCCGCTCAAAGTTACCCTA GACTATAGCCTCGCAACAACTTGGCCGACGCCGCTGGATCTCAATGGGCCAAAGGTCAAGCGCAATTGGCAATTT AGCACCCACATGGTGTTCGCGAATTCCGTTGATGAAATATCGGACGGGCAGCTCTGGCAAATAGCACGAGATGCG GTTGATGAGATGATTGCTGACCGAAGCCAATATCTCATCGGGCCCATGGCACAACCTAACGCCATGGGAATTCTG GCCTGGGGCAATGAGATCATACTTGCGTCTTCTATGAAGGGAGCAGGTTCTTTCTCCTATGACTTTCTTGGAGGT GACAACCCGGTCGGCAGAAGACTAGAGATGTGCCAGATGCTCTGGGGGGGAGACTGGTCGACTACCCATAAGAAC AATGGTAATTGCGCAGAGGAATTCGCGGCCTTCTTATACCACAGACAAAACGAAGTTGAACTGAAAGGACAAAAC CCGAGAGTTGGCACCTGGGTCGCGGGAAAAGCTTGGAAACAGATAGATCCATGTGGAACTGGTGATGCGGACATT TGGGGGTGCAATCTTTTCGTCCAGGGGGAGGGAATGAGGGTAATGGATACTCAAACAGCACCGGAGCCTTACACG TTGGCCAGCCTTGCTGGAGGCCTGACCCGTCAGGAGCAAATTCAGTCATGCGGGGGTGACCCTAGAGTATTCTTT CCGTAG |
| Transcript | >Pro_DTO377G3_2|g2300.t1 ATGCTCTTCCCACTCGTCCGAAAGATCGGTCTTTTGGCCTTTGGGGCCTTGGTCGTGGTCAACCCTGCACTTGGA GCAAAACAGCCCAAGCTAGGTAGTTACGACCTGACGGAAGCCAAAATGCCGCTTGGCCCGCTCAAAGTTACCCTA GACTATAGCCTCGCAACAACTTGGCCGACGCCGCTGGATCTCAATGGGCCAAAGGTCAAGCGCAATTGGCAATTT AGCACCCACATGGTGTTCGCGAATTCCGTTGATGAAATATCGGACGGGCAGCTCTGGCAAATAGCACGAGATGCG GTTGATGAGATGATTGCTGACCGAAGCCAATATCTCATCGGGCCCATGGCACAACCTAACGCCATGGGAATTCTG GCCTGGGGCAATGAGATCATACTTGCGTCTTCTATGAAGGGAGCAGGTTCTTTCTCCTATGACTTTCTTGGAGGT GACAACCCGGTCGGCAGAAGACTAGAGATGTGCCAGATGCTCTGGGGGGGAGACTGGTCGACTACCCATAAGAAC AATGGTAATTGCGCAGAGGAATTCGCGGCCTTCTTATACCACAGACAAAACGAAGTTGAACTGAAAGGACAAAAC CCGAGAGTTGGCACCTGGGTCGCGGGAAAAGCTTGGAAACAGATAGATCCATGTGGAACTGGTGATGCGGACATT TGGGGGTGCAATCTTTTCGTCCAGGGGGAGGGAATGAGGGTAATGGATACTCAAACAGCACCGGAGCCTTACACG TTGGCCAGCCTTGCTGGAGGCCTGACCCGTCAGGAGCAAATTCAGTCATGCGGGGGTGACCCTAGAGTATTCTTT CCGTAG |
| Gene | >Pro_DTO377G3_2|g2300.t1 ATGCTCTTCCCACTCGTCCGAAAGATCGGTCTTTTGGCCTTTGGGGCCTTGGTCGTGGTCAACCCTGCACTTGGA GCAAAACAGCCCAAGCTAGGTAGTTACGACCTGACGGAAGCCAAAATGCCGCTTGGCCCGCTCAAAGTTACCCTA GACTATAGCCTCGCAACAACTTGGCCGACGCCGCTGGATCTCAATGGGCCAAAGGTCAAGCGCAATTGGCAATTT AGCACCCACATGGTGTTCGCGAATTCCGTTGATGAAATATCGGACGGGCAGCTCTGGCAAATAGCACGAGATGCG GTTGATGAGATGATTGCTGACCGAAGCCAATATCTCATCGGGCCCATGGCACAACCTAACGCCATGGGAATTCTG GCCTGGGGCAATGAGATCATACTTGCGTCTTCTATGAAGGGAGCAGGTTCTTTCTCCTATGACTTTCTTGGAGGT GACAACCCGGTCGGCAGAAGACTAGAGATGTGCCAGATGCTCTGGGGGGGAGACTGGTCGACTACCCATAAGAAC AATGGTAATTGCGCAGAGGAATTCGCGGCCTTCTTATACCACAGACAAAACGAAGTTGAACTGAAAGGACAAAAC CCGAGAGTTGGCACCTGGGTCGCGGGAAAAGCTTGGAAACAGATAGATCCATGTGGAACTGGTGATGCGGTAAGT AATTAGTGTCCTTAGAGAAGCTTATGCTTCATGAAGATCAACTGACAAATGTATAGGACATTTGGGGGTGCAATC TTTTCGTCCAGGGGGAGGGAATGAGGGTAATGGATACTCAAACAGCACCGGAGCCTTACACGTTGGCCAGCCTTG CTGGAGGCCTGACCCGTCAGGAGCAAATTCAGTCATGCGGGGGTGACCCTAGAGTATTCTTTCCGTAG |