© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g23.t1 |
| Gene name | |
| Location | scaffold_01:58692..60062 |
| Strand | + |
| Gene length (bp) | 1370 |
| Transcript length (bp) | 1197 |
| Coding sequence length (bp) | 1197 |
| Protein length (aa) | 399 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00026 | Asp | Eukaryotic aspartyl protease | 8.5E-110 | 84 | 397 |
| PF14543 | TAXi_N | Xylanase inhibitor N-terminal | 1.4E-13 | 85 | 241 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1723.07 | 875.39 | 2570.76 |
| 5d_25C | Five days - 25 degrees Celsius | 4010.18 | 1708.90 | 6311.45 |
| 7d_25C | Seven days - 25 degrees Celsius | 5528.69 | 2133.77 | 8923.61 |
| 10d_25C | Ten days - 25 degrees Celsius | 12740.20 | 3916.01 | 21564.40 |
| 7d_15C | Seven days - 15 degrees Celsius | 1653.82 | 835.80 | 2471.85 |
| 7d_30C | Seven days - 30 degrees Celsius | 5408.68 | 2153.05 | 8664.31 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.001804 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.923574 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.382740 | no |
| 5d_25C | 7d_15C | 0.002761 | yes |
| 5d_25C | 7d_30C | 0.402026 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.967731 | no |
| 7d_25C | 10d_25C | 0.013513 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.011388 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g23.t1 MKSFTILAASALLGSAAAEVHKLKLNKVPLSEQLDTHNIDAHMHNLGQKYMGIRPEKHQDLFHDTSLNPASGHNV LVDNFLNAQYFSEITIGTPPQTFKVVLDTGSSNLWVPSSQCSSIACFLHSKYDSSSSSTYQKNGSEFEIRYGSGS LSGFVSKDTLQIGDLKIEGQDFAEATNEPGLAFAFGRFDGILGLGYDTISVNKMVPPFYHMINQKLVDEPVFAFY LGDADKDGDNSEATFGGIDESHYTGELIKIPLRRKAYWEVELNSIALGDNVAELENTGVILDTGTSLIALPSTMA ELLNKEIGATKGFTGQYSVECDKRDSLPDLTFTLGGHKFTIGPHDYILEVQGSCISSFMGMDFPEPVGPLAILGD AFLRRWYSVYDVGNNAVGLAKAK* |
| Coding | >Pro_DTO377G3_2|g23.t1 ATGAAGTCATTCACTATCCTAGCAGCTTCGGCGTTGCTGGGCAGTGCTGCCGCCGAGGTTCACAAGCTCAAGCTC AACAAGGTCCCTCTGTCGGAGCAACTGGACACACACAACATCGATGCTCATATGCACAACTTGGGCCAGAAGTAC ATGGGAATTCGTCCCGAGAAGCACCAGGACCTGTTCCATGACACTTCCCTGAACCCTGCCAGTGGCCACAACGTG CTGGTTGACAACTTCCTGAATGCTCAGTACTTCTCCGAGATCACGATCGGTACTCCTCCCCAGACCTTCAAGGTT GTGCTTGACACCGGTAGCTCCAACCTGTGGGTCCCTTCTTCGCAGTGCAGCTCTATCGCCTGCTTCCTTCATAGC AAGTATGACTCGTCTTCTTCGAGCACCTATCAGAAGAATGGCTCCGAGTTCGAGATTCGCTATGGATCTGGCAGC CTGAGCGGCTTCGTGTCTAAGGACACCCTCCAGATTGGTGACTTGAAGATCGAGGGACAGGACTTCGCCGAAGCT ACCAATGAGCCTGGTCTGGCTTTTGCCTTCGGTCGCTTTGATGGTATTCTTGGCCTCGGCTATGATACCATTTCC GTCAACAAGATGGTCCCTCCCTTCTACCACATGATCAACCAGAAGCTGGTTGATGAGCCTGTGTTTGCTTTCTAC CTTGGCGATGCCGACAAGGATGGTGACAACTCCGAGGCTACTTTTGGTGGTATCGACGAGAGCCACTACACTGGC GAGCTGATCAAGATCCCTCTTCGTCGCAAGGCGTACTGGGAGGTCGAGCTCAACTCCATTGCCCTTGGCGATAAC GTTGCTGAACTTGAGAACACCGGTGTCATTCTGGACACTGGTACCTCTCTCATTGCCCTGCCCTCCACCATGGCC GAGCTTCTGAACAAGGAGATCGGTGCCACCAAGGGCTTTACTGGTCAGTACAGTGTCGAGTGCGACAAGCGGGAC TCGTTGCCCGACCTCACCTTCACTCTGGGCGGCCACAAGTTCACTATTGGCCCCCACGACTACATCCTGGAGGTC CAGGGCTCCTGCATCAGCAGCTTCATGGGCATGGACTTCCCCGAGCCTGTGGGTCCCCTTGCTATTTTGGGCGAT GCCTTCCTGCGCCGCTGGTACAGTGTCTATGATGTCGGTAACAACGCCGTCGGTCTGGCCAAGGCCAAATAA |
| Transcript | >Pro_DTO377G3_2|g23.t1 ATGAAGTCATTCACTATCCTAGCAGCTTCGGCGTTGCTGGGCAGTGCTGCCGCCGAGGTTCACAAGCTCAAGCTC AACAAGGTCCCTCTGTCGGAGCAACTGGACACACACAACATCGATGCTCATATGCACAACTTGGGCCAGAAGTAC ATGGGAATTCGTCCCGAGAAGCACCAGGACCTGTTCCATGACACTTCCCTGAACCCTGCCAGTGGCCACAACGTG CTGGTTGACAACTTCCTGAATGCTCAGTACTTCTCCGAGATCACGATCGGTACTCCTCCCCAGACCTTCAAGGTT GTGCTTGACACCGGTAGCTCCAACCTGTGGGTCCCTTCTTCGCAGTGCAGCTCTATCGCCTGCTTCCTTCATAGC AAGTATGACTCGTCTTCTTCGAGCACCTATCAGAAGAATGGCTCCGAGTTCGAGATTCGCTATGGATCTGGCAGC CTGAGCGGCTTCGTGTCTAAGGACACCCTCCAGATTGGTGACTTGAAGATCGAGGGACAGGACTTCGCCGAAGCT ACCAATGAGCCTGGTCTGGCTTTTGCCTTCGGTCGCTTTGATGGTATTCTTGGCCTCGGCTATGATACCATTTCC GTCAACAAGATGGTCCCTCCCTTCTACCACATGATCAACCAGAAGCTGGTTGATGAGCCTGTGTTTGCTTTCTAC CTTGGCGATGCCGACAAGGATGGTGACAACTCCGAGGCTACTTTTGGTGGTATCGACGAGAGCCACTACACTGGC GAGCTGATCAAGATCCCTCTTCGTCGCAAGGCGTACTGGGAGGTCGAGCTCAACTCCATTGCCCTTGGCGATAAC GTTGCTGAACTTGAGAACACCGGTGTCATTCTGGACACTGGTACCTCTCTCATTGCCCTGCCCTCCACCATGGCC GAGCTTCTGAACAAGGAGATCGGTGCCACCAAGGGCTTTACTGGTCAGTACAGTGTCGAGTGCGACAAGCGGGAC TCGTTGCCCGACCTCACCTTCACTCTGGGCGGCCACAAGTTCACTATTGGCCCCCACGACTACATCCTGGAGGTC CAGGGCTCCTGCATCAGCAGCTTCATGGGCATGGACTTCCCCGAGCCTGTGGGTCCCCTTGCTATTTTGGGCGAT GCCTTCCTGCGCCGCTGGTACAGTGTCTATGATGTCGGTAACAACGCCGTCGGTCTGGCCAAGGCCAAATAA |
| Gene | >Pro_DTO377G3_2|g23.t1 ATGAAGTCATTCACTATCCTAGCAGCTTCGGCGTTGCTGGGCAGTGCTGCCGCCGAGGTTCACAAGCTCAAGCTC AACAAGGTCCCTCTGTCGGAGCAACTGGTACGATCATCCCATCATCCCTATTGCCTTCACAATACCCTGGAAGCT GATCGATTGATAGGACACACACAACATCGATGCTCATATGCACAACTTGGGCCAGAAGTACATGGGAATTCGTCC CGAGAAGCACCAGGACCTGTTCCATGACACTTCCCTGAACCCTGCCAGTGGCCACAACGTGCTGGTTGACAACTT CCTGAATGCTCAGTGTACGATAGTACCACCAAAATTTAGGTCCTGAATGATGACGCTGACCTTTCCAGACTTCTC CGAGATCACGATCGGTACTCCTCCCCAGACCTTCAAGGTTGTGCTTGACACCGGTAGCTCCAACCTGTGGGTCCC TTCTTCGCAGTGCAGCTCTATCGCCTGCTTCCTTCATAGCAAGTATGACTCGTCTTCTTCGAGCACCTATCAGAA GAATGGCTCCGAGTTCGAGATTCGCTATGGATCTGGCAGCCTGAGCGGCTTCGTGTCTAAGGACACCCTCCAGAT TGGTGACTTGAAGATCGAGGGACAGGACTTCGCCGAAGCTACCAATGAGCCTGGTCTGGCTTTTGCCTTCGGTCG CTTTGATGGTATTCTTGGCCTCGGCTATGATACCATTTCCGTCAACAAGATGGTCCCTCCCTTCTACCACATGAT CAACCAGAAGCTGGTTGATGAGCCTGTGTTTGCTTTCTACCTTGGCGATGCCGACAAGGATGGTGACAACTCCGA GGCTACTTTTGGTGGTATCGACGAGAGCCACTACACTGGCGAGCTGATCAAGATCCCTCTTCGTCGCAAGGCGTA CTGGGAGGTCGAGCTCAACTCCATTGCCCTTGGCGATAACGTTGCTGAACTTGAGAACACCGGTGTCATTCTGGA CACTGGTACCTCTCTCATTGCCCTGCCCTCCACCATGGCCGAGCTTCTGTAAGTTGGATTCTCGCTTGCCTTCGT AATGTAATCTGTTTGCTGACCTATTCCACAGGAACAAGGAGATCGGTGCCACCAAGGGCTTTACTGGTCAGTACA GTGTCGAGTGCGACAAGCGGGACTCGTTGCCCGACCTCACCTTCACTCTGGGCGGCCACAAGTTCACTATTGGCC CCCACGACTACATCCTGGAGGTCCAGGGCTCCTGCATCAGCAGCTTCATGGGCATGGACTTCCCCGAGCCTGTGG GTCCCCTTGCTATTTTGGGCGATGCCTTCCTGCGCCGCTGGTACAGTGTCTATGATGTCGGTAACAACGCCGTCG GTCTGGCCAAGGCCAAATAA |