© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2285.t1 |
| Gene name | |
| Location | scaffold_02:2146139..2147318 |
| Strand | - |
| Gene length (bp) | 1179 |
| Transcript length (bp) | 918 |
| Coding sequence length (bp) | 918 |
| Protein length (aa) | 306 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01634 | HisG | ATP phosphoribosyltransferase | 3.3E-54 | 58 | 225 |
| PF08029 | HisG_C | HisG, C-terminal domain | 3.9E-28 | 229 | 301 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005737 | cytoplasm | Yes |
| GO:0000287 | magnesium ion binding | Yes |
| GO:0003879 | ATP phosphoribosyltransferase activity | Yes |
| GO:0000105 | histidine biosynthetic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006547 | histidine metabolic process | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:0005488 | binding | No |
| GO:0008152 | metabolic process | No |
| GO:0016740 | transferase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0046394 | carboxylic acid biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0016757 | glycosyltransferase activity | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0043167 | ion binding | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0044283 | small molecule biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043169 | cation binding | No |
| GO:0016763 | pentosyltransferase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016053 | organic acid biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008652 | cellular amino acid biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 67.15 | 38.75 | 95.56 |
| 5d_25C | Five days - 25 degrees Celsius | 48.62 | 26.30 | 70.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 43.47 | 22.95 | 63.98 |
| 10d_25C | Ten days - 25 degrees Celsius | 24.84 | 11.43 | 38.26 |
| 7d_15C | Seven days - 15 degrees Celsius | 69.01 | 39.87 | 98.14 |
| 7d_30C | Seven days - 30 degrees Celsius | 36.29 | 18.41 | 54.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.202625 | no |
| 3d_25C | 7d_25C | 0.071362 | no |
| 3d_25C | 7d_15C | 0.940557 | no |
| 3d_25C | 7d_30C | 0.008469 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.752508 | no |
| 5d_25C | 7d_15C | 0.159868 | no |
| 5d_25C | 7d_30C | 0.312471 | no |
| 5d_25C | 10d_25C | 0.011388 | yes |
| 7d_25C | 7d_15C | 0.055667 | no |
| 7d_25C | 7d_30C | 0.573498 | no |
| 7d_25C | 10d_25C | 0.039770 | yes |
| 7d_15C | 7d_30C | 0.006742 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.198288 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2285.t1 MDLVNHLEGRLLFAVPKKGRLQQATLDLLAGCDVQFRRETRLDIALVKNLPIALIFLPAADIPTFVGEGRVDLGI TGRDQVAEHDATLPTGEASNVEEILDLGFGACKLQVQVPEKGDIKEAKDLVGRNVVTSFTALTESFFRNLEGAEV GQKLSTNIKYVGGSVEAACALGVADGIVDLVESGETMKAAGLKAIDTVVSSTAVLVKSRKTNSEMLTILSSRLRG VITAQKFVLCQYNIPREQLAIASKITPGKRAPTITALEEEGWVAVSSMVEKKHIATVMDELIKVGASDILVMNIA NSRTD* |
| Coding | >Pro_DTO377G3_2|g2285.t1 ATGGATCTCGTCAACCACCTCGAAGGCCGTCTCCTCTTCGCCGTGCCCAAAAAAGGACGTCTGCAACAAGCAACC CTCGACCTCCTCGCCGGCTGTGACGTCCAGTTCCGCCGCGAAACCCGCCTCGATATCGCACTGGTCAAGAATTTG CCCATTGCGCTGATCTTCCTGCCCGCTGCCGATATCCCGACATTCGTCGGCGAAGGCCGCGTTGATTTGGGAATC ACCGGCCGCGACCAGGTCGCCGAGCACGATGCCACCCTGCCCACCGGCGAGGCCTCCAACGTCGAGGAGATCCTC GACCTGGGCTTCGGCGCCTGCAAGCTGCAAGTGCAGGTGCCTGAGAAGGGCGATATCAAAGAGGCCAAGGATCTC GTTGGCCGCAACGTCGTGACCAGCTTCACTGCCCTCACTGAATCTTTCTTCCGTAACCTCGAGGGCGCCGAAGTT GGCCAGAAACTCTCCACGAATATCAAGTATGTTGGCGGTAGTGTTGAGGCTGCCTGCGCTCTCGGCGTTGCGGAT GGTATTGTTGATCTTGTTGAGTCTGGTGAGACTATGAAGGCCGCTGGCCTGAAGGCAATTGACACTGTTGTCTCC AGCACCGCTGTGCTGGTCAAGTCCCGCAAGACCAACTCCGAAATGCTCACTATACTCAGCTCCCGTCTGCGTGGT GTCATCACCGCCCAGAAGTTCGTCCTGTGCCAATACAACATCCCGCGTGAGCAGCTGGCAATCGCGTCCAAGATC ACCCCCGGCAAGCGTGCGCCTACTATCACCGCGCTCGAGGAGGAGGGCTGGGTTGCTGTCAGCTCCATGGTGGAG AAGAAGCACATTGCCACGGTAATGGATGAGCTGATTAAGGTCGGCGCGAGTGATATCTTGGTCATGAACATTGCC AACTCGCGCACGGATTAA |
| Transcript | >Pro_DTO377G3_2|g2285.t1 ATGGATCTCGTCAACCACCTCGAAGGCCGTCTCCTCTTCGCCGTGCCCAAAAAAGGACGTCTGCAACAAGCAACC CTCGACCTCCTCGCCGGCTGTGACGTCCAGTTCCGCCGCGAAACCCGCCTCGATATCGCACTGGTCAAGAATTTG CCCATTGCGCTGATCTTCCTGCCCGCTGCCGATATCCCGACATTCGTCGGCGAAGGCCGCGTTGATTTGGGAATC ACCGGCCGCGACCAGGTCGCCGAGCACGATGCCACCCTGCCCACCGGCGAGGCCTCCAACGTCGAGGAGATCCTC GACCTGGGCTTCGGCGCCTGCAAGCTGCAAGTGCAGGTGCCTGAGAAGGGCGATATCAAAGAGGCCAAGGATCTC GTTGGCCGCAACGTCGTGACCAGCTTCACTGCCCTCACTGAATCTTTCTTCCGTAACCTCGAGGGCGCCGAAGTT GGCCAGAAACTCTCCACGAATATCAAGTATGTTGGCGGTAGTGTTGAGGCTGCCTGCGCTCTCGGCGTTGCGGAT GGTATTGTTGATCTTGTTGAGTCTGGTGAGACTATGAAGGCCGCTGGCCTGAAGGCAATTGACACTGTTGTCTCC AGCACCGCTGTGCTGGTCAAGTCCCGCAAGACCAACTCCGAAATGCTCACTATACTCAGCTCCCGTCTGCGTGGT GTCATCACCGCCCAGAAGTTCGTCCTGTGCCAATACAACATCCCGCGTGAGCAGCTGGCAATCGCGTCCAAGATC ACCCCCGGCAAGCGTGCGCCTACTATCACCGCGCTCGAGGAGGAGGGCTGGGTTGCTGTCAGCTCCATGGTGGAG AAGAAGCACATTGCCACGGTAATGGATGAGCTGATTAAGGTCGGCGCGAGTGATATCTTGGTCATGAACATTGCC AACTCGCGCACGGATTAA |
| Gene | >Pro_DTO377G3_2|g2285.t1 ATGGATCTCGTCAACCAGTGAGTCAATTTCAATTACAAACCGCATGGGGATTTCTGCTAATATAACGATTCTAAA CAGCCTCGAAGGCCGTCTCCTCTTCGCCGTGCCCAAAAGCAAGTGCTCTCCCAAATCGTGACTCATAGATGCGAG CAGCGATACCCACATGAACAAGAAACAAACACAAAGAAACCAAGACTGACGGCGCAAACTCCACTATACAGAAGG ACGTCTGCAACAAGCAACCCTCGACCTCCTCGCCGGCTGTGACGTCCAGTTCCGCCGCGAAACCCGCCTCGATAT CGCACTGGTCAAGAATTTGCCCATTGCGCTGATCTTCCTGCCCGCTGCCGATATCCCGACATTCGTCGGCGAAGG CCGCGTTGATTTGGGAATCACCGGCCGCGACCAGGTCGCCGAGCACGATGCCACCCTGCCCACCGGCGAGGCCTC CAACGTCGAGGAGATCCTCGACCTGGGCTTCGGCGCCTGCAAGCTGCAAGTGCAGGTGCCTGAGAAGGGCGATAT CAAAGAGGCCAAGGATCTCGTTGGCCGCAACGTCGTGACCAGCTTCACTGCCCTCACTGAATCTTTCTTCCGTAA CCTCGAGGGCGCCGAAGTTGGCCAGAAACTCTCCACGAATATCAAGTATGTTGGCGGTAGTGTTGAGGCTGCCTG CGCTCTCGGCGTTGCGGATGGTATTGTTGATCTTGTTGGTATGTTGTGATATGCCAGTCTACTGAAATACTGTCC TGTGGAATACGGAACAGGGAACCGGAACCCGTTGCTAACACTCAAATCTGTTCAGAGTCTGGTGAGACTATGAAG GCCGCTGGCCTGAAGGCAATTGACACTGTTGTCTCCAGCACCGCTGTGCTGGTCAAGTCCCGCAAGACCAACTCC GAAATGCTCACTATACTCAGCTCCCGTCTGCGTGGTGTCATCACCGCCCAGAAGTTCGTCCTGTGCCAATACAAC ATCCCGCGTGAGCAGCTGGCAATCGCGTCCAAGATCACCCCCGGCAAGCGTGCGCCTACTATCACCGCGCTCGAG GAGGAGGGCTGGGTTGCTGTCAGCTCCATGGTGGAGAAGAAGCACATTGCCACGGTAATGGATGAGCTGATTAAG GTCGGCGCGAGTGATATCTTGGTCATGAACATTGCCAACTCGCGCACGGATTAA |