© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g2259.t1 |
| Gene name | |
| Location | scaffold_02:2073513..2075044 |
| Strand | - |
| Gene length (bp) | 1531 |
| Transcript length (bp) | 1422 |
| Coding sequence length (bp) | 1422 |
| Protein length (aa) | 474 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16113 | ECH_2 | Enoyl-CoA hydratase/isomerase | 6.0E-129 | 45 | 388 |
| PF00378 | ECH_1 | Enoyl-CoA hydratase/isomerase | 2.5E-23 | 45 | 224 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 67.04 | 40.71 | 93.36 |
| 5d_25C | Five days - 25 degrees Celsius | 58.86 | 35.38 | 82.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 59.50 | 35.66 | 83.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 56.61 | 33.98 | 79.24 |
| 7d_15C | Seven days - 15 degrees Celsius | 53.87 | 32.17 | 75.57 |
| 7d_30C | Seven days - 30 degrees Celsius | 51.92 | 30.96 | 72.88 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.639094 | no |
| 3d_25C | 7d_25C | 0.677799 | no |
| 3d_25C | 7d_15C | 0.380878 | no |
| 3d_25C | 7d_30C | 0.284490 | no |
| 3d_25C | 10d_25C | 0.518001 | no |
| 5d_25C | 7d_25C | 0.978889 | no |
| 5d_25C | 7d_15C | 0.775471 | no |
| 5d_25C | 7d_30C | 0.665121 | no |
| 5d_25C | 10d_25C | 0.913783 | no |
| 7d_25C | 7d_15C | 0.741301 | no |
| 7d_25C | 7d_30C | 0.630704 | no |
| 7d_25C | 10d_25C | 0.884252 | no |
| 7d_15C | 7d_30C | 0.916475 | no |
| 7d_15C | 10d_25C | 0.883721 | no |
| 7d_30C | 10d_25C | 0.779684 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2259.t1 MPLRAKVTNPAFRATAMMSTSSDIPKELPGDERDDVLFNSIYGLRSVELNRPKKLNSLNGSMARKIVPRLKEWEK SHLANMILISGAGTKALCAGGDVAALALQNESGVEGQKASADFFALEYRLDHLLATYSKPVISFMDGITMGGGVG LSMHAPFRIATERTLFAMPETTIGFFPDVGGSFFLPRLDGETGTYLALTSERLKGVQALYAGIATHYLHSSVLSS VTQRLSELTFPDHVELRERLEIVNKTMAEFSLGLPPLEEEPMLMAGTLRTAIDRCFGFNTMEEIIQALEKETEHK EWAQKTLETLSGRSPTSLKVTLRQMRLGKKWTITETFQREHEIAAKFMRHPDFVEGVKARLMSKPPRQAQWQPAT LQDVSDKIVDDFFEIPDNESRLPLLSQGDYTKYPYAHFALPSEDEIKKVVCEGHSSRRPVIDYFLQKYAHREGVR RKVVEVIARRTTTSSPEGLKWLD* |
| Coding | >Pro_DTO377G3_2|g2259.t1 ATGCCTCTACGCGCCAAGGTGACCAACCCTGCCTTTCGGGCAACAGCTATGATGTCGACTTCATCTGATATCCCC AAAGAGCTCCCCGGCGATGAGCGCGATGATGTCCTGTTCAACTCGATCTACGGCCTCCGCAGCGTTGAACTCAAC CGACCCAAGAAGCTCAACTCCCTCAACGGCTCGATGGCTCGCAAGATTGTCCCTCGATTGAAGGAGTGGGAGAAA TCTCATCTTGCAAACATGATCCTCATCTCCGGAGCCGGCACCAAGGCTCTCTGCGCAGGAGGTGACGTTGCTGCT CTGGCCCTGCAGAATGAGAGTGGAGTGGAGGGACAAAAAGCATCAGCGGACTTCTTCGCACTAGAATACCGCCTT GACCACCTGCTCGCTACATACTCGAAGCCTGTCATCTCATTTATGGATGGAATCACCATGGGCGGTGGCGTAGGC CTCAGCATGCACGCTCCCTTCCGAATTGCGACCGAGCGTACCCTTTTTGCTATGCCTGAGACCACAATTGGCTTC TTCCCCGACGTTGGCGGTTCCTTCTTCCTCCCGCGTCTGGATGGTGAGACCGGTACATACCTGGCTTTGACCTCG GAGCGCTTGAAGGGTGTTCAGGCTCTGTACGCAGGCATCGCCACACACTACTTGCACTCCAGTGTTCTGAGCAGT GTGACTCAGCGTCTTTCCGAGCTGACTTTCCCCGACCACGTCGAGCTTCGCGAGCGTTTGGAAATTGTGAACAAG ACCATGGCTGAGTTCTCCCTTGGCCTCCCCCCGCTTGAGGAGGAGCCGATGCTCATGGCTGGTACCCTGCGTACT GCCATTGACCGCTGCTTCGGATTCAACACCATGGAAGAGATTATCCAGGCCTTGGAGAAGGAAACTGAGCACAAG GAGTGGGCACAAAAGACATTGGAGACTCTGTCAGGCCGCTCCCCGACCTCTCTGAAGGTGACTCTGCGCCAGATG CGTCTTGGCAAGAAGTGGACCATCACGGAGACCTTCCAGCGCGAGCACGAGATCGCCGCCAAATTCATGCGCCAC CCTGATTTCGTCGAGGGTGTCAAGGCCCGTCTGATGTCCAAGCCTCCCCGCCAGGCCCAGTGGCAGCCCGCTACT CTCCAAGATGTCTCGGATAAAATTGTGGACGACTTCTTCGAGATCCCCGACAACGAGTCCCGCCTACCGCTTCTG AGCCAGGGAGATTACACTAAATACCCTTATGCCCACTTCGCCCTTCCCTCCGAAGATGAGATTAAAAAGGTTGTG TGTGAGGGACATTCATCGCGGAGACCCGTGATCGACTACTTCCTCCAGAAATACGCCCACCGCGAAGGTGTGCGC CGAAAGGTGGTCGAGGTGATTGCCCGACGGACAACGACATCATCTCCCGAAGGACTTAAGTGGTTGGATTAA |
| Transcript | >Pro_DTO377G3_2|g2259.t1 ATGCCTCTACGCGCCAAGGTGACCAACCCTGCCTTTCGGGCAACAGCTATGATGTCGACTTCATCTGATATCCCC AAAGAGCTCCCCGGCGATGAGCGCGATGATGTCCTGTTCAACTCGATCTACGGCCTCCGCAGCGTTGAACTCAAC CGACCCAAGAAGCTCAACTCCCTCAACGGCTCGATGGCTCGCAAGATTGTCCCTCGATTGAAGGAGTGGGAGAAA TCTCATCTTGCAAACATGATCCTCATCTCCGGAGCCGGCACCAAGGCTCTCTGCGCAGGAGGTGACGTTGCTGCT CTGGCCCTGCAGAATGAGAGTGGAGTGGAGGGACAAAAAGCATCAGCGGACTTCTTCGCACTAGAATACCGCCTT GACCACCTGCTCGCTACATACTCGAAGCCTGTCATCTCATTTATGGATGGAATCACCATGGGCGGTGGCGTAGGC CTCAGCATGCACGCTCCCTTCCGAATTGCGACCGAGCGTACCCTTTTTGCTATGCCTGAGACCACAATTGGCTTC TTCCCCGACGTTGGCGGTTCCTTCTTCCTCCCGCGTCTGGATGGTGAGACCGGTACATACCTGGCTTTGACCTCG GAGCGCTTGAAGGGTGTTCAGGCTCTGTACGCAGGCATCGCCACACACTACTTGCACTCCAGTGTTCTGAGCAGT GTGACTCAGCGTCTTTCCGAGCTGACTTTCCCCGACCACGTCGAGCTTCGCGAGCGTTTGGAAATTGTGAACAAG ACCATGGCTGAGTTCTCCCTTGGCCTCCCCCCGCTTGAGGAGGAGCCGATGCTCATGGCTGGTACCCTGCGTACT GCCATTGACCGCTGCTTCGGATTCAACACCATGGAAGAGATTATCCAGGCCTTGGAGAAGGAAACTGAGCACAAG GAGTGGGCACAAAAGACATTGGAGACTCTGTCAGGCCGCTCCCCGACCTCTCTGAAGGTGACTCTGCGCCAGATG CGTCTTGGCAAGAAGTGGACCATCACGGAGACCTTCCAGCGCGAGCACGAGATCGCCGCCAAATTCATGCGCCAC CCTGATTTCGTCGAGGGTGTCAAGGCCCGTCTGATGTCCAAGCCTCCCCGCCAGGCCCAGTGGCAGCCCGCTACT CTCCAAGATGTCTCGGATAAAATTGTGGACGACTTCTTCGAGATCCCCGACAACGAGTCCCGCCTACCGCTTCTG AGCCAGGGAGATTACACTAAATACCCTTATGCCCACTTCGCCCTTCCCTCCGAAGATGAGATTAAAAAGGTTGTG TGTGAGGGACATTCATCGCGGAGACCCGTGATCGACTACTTCCTCCAGAAATACGCCCACCGCGAAGGTGTGCGC CGAAAGGTGGTCGAGGTGATTGCCCGACGGACAACGACATCATCTCCCGAAGGACTTAAGTGGTTGGATTAA |
| Gene | >Pro_DTO377G3_2|g2259.t1 ATGCCTCTACGCGCCAAGGTGACCAACCCTGCCTTTCGGGCAACAGCTATGGTATGTACCCTATTCGGAGAGAAG CCCGATATCCAGTGCTCACATTTGTTAGATGTCGACTTCATCTGATATCCCCAAAGAGCTCCCCGGCGATGAGCG CGATGATGTCCTGTTCAACTCGATCTACGGCCTCCGCAGCGTTGAACTCAACCGACCCAAGAAGCTCAACTCCCT CAACGGCTCGATGGCTCGCAAGATTGTCCCTCGATTGAAGGTTAGAATGGACACCCGGAACTTCAGACACATACA ATACTAAGCGTTGGATGAATAGGAGTGGGAGAAATCTCATCTTGCAAACATGATCCTCATCTCCGGAGCCGGCAC CAAGGCTCTCTGCGCAGGAGGTGACGTTGCTGCTCTGGCCCTGCAGAATGAGAGTGGAGTGGAGGGACAAAAAGC ATCAGCGGACTTCTTCGCACTAGAATACCGCCTTGACCACCTGCTCGCTACATACTCGAAGCCTGTCATCTCATT TATGGATGGAATCACCATGGGCGGTGGCGTAGGCCTCAGCATGCACGCTCCCTTCCGAATTGCGACCGAGCGTAC CCTTTTTGCTATGCCTGAGACCACAATTGGCTTCTTCCCCGACGTTGGCGGTTCCTTCTTCCTCCCGCGTCTGGA TGGTGAGACCGGTACATACCTGGCTTTGACCTCGGAGCGCTTGAAGGGTGTTCAGGCTCTGTACGCAGGCATCGC CACACACTACTTGCACTCCAGTGTTCTGAGCAGTGTGACTCAGCGTCTTTCCGAGCTGACTTTCCCCGACCACGT CGAGCTTCGCGAGCGTTTGGAAATTGTGAACAAGACCATGGCTGAGTTCTCCCTTGGCCTCCCCCCGCTTGAGGA GGAGCCGATGCTCATGGCTGGTACCCTGCGTACTGCCATTGACCGCTGCTTCGGATTCAACACCATGGAAGAGAT TATCCAGGCCTTGGAGAAGGAAACTGAGCACAAGGAGTGGGCACAAAAGACATTGGAGACTCTGTCAGGCCGCTC CCCGACCTCTCTGAAGGTGACTCTGCGCCAGATGCGTCTTGGCAAGAAGTGGACCATCACGGAGACCTTCCAGCG CGAGCACGAGATCGCCGCCAAATTCATGCGCCACCCTGATTTCGTCGAGGGTGTCAAGGCCCGTCTGATGTCCAA GCCTCCCCGCCAGGCCCAGTGGCAGCCCGCTACTCTCCAAGATGTCTCGGATAAAATTGTGGACGACTTCTTCGA GATCCCCGACAACGAGTCCCGCCTACCGCTTCTGAGCCAGGGAGATTACACTAAATACCCTTATGCCCACTTCGC CCTTCCCTCCGAAGATGAGATTAAAAAGGTTGTGTGTGAGGGACATTCATCGCGGAGACCCGTGATCGACTACTT CCTCCAGAAATACGCCCACCGCGAAGGTGTGCGCCGAAAGGTGGTCGAGGTGATTGCCCGACGGACAACGACATC ATCTCCCGAAGGACTTAAGTGGTTGGATTAA |