© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2258.t1 |
| Gene name | |
| Location | scaffold_02:2071404..2073174 |
| Strand | - |
| Gene length (bp) | 1770 |
| Transcript length (bp) | 1491 |
| Coding sequence length (bp) | 1491 |
| Protein length (aa) | 497 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06963 | FPN1 | Ferroportin1 (FPN1) | 5.5E-144 | 46 | 456 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005381 | iron ion transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0034755 | iron ion transmembrane transport | Yes |
| GO:0055085 | transmembrane transport | No |
| GO:0030001 | metal ion transport | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0006826 | iron ion transport | No |
| GO:0000041 | transition metal ion transport | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 67 | 89 | 22 |
| 2 | 202 | 224 | 22 |
| 3 | 281 | 303 | 22 |
| 4 | 350 | 372 | 22 |
| 5 | 445 | 467 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 27.43 | 14.84 | 40.02 |
| 5d_25C | Five days - 25 degrees Celsius | 48.61 | 28.90 | 68.32 |
| 7d_25C | Seven days - 25 degrees Celsius | 48.21 | 28.52 | 67.90 |
| 10d_25C | Ten days - 25 degrees Celsius | 56.99 | 34.13 | 79.86 |
| 7d_15C | Seven days - 15 degrees Celsius | 35.31 | 19.89 | 50.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 44.02 | 25.90 | 62.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.013810 | yes |
| 3d_25C | 7d_25C | 0.015558 | yes |
| 3d_25C | 7d_15C | 0.367713 | no |
| 3d_25C | 7d_30C | 0.045183 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.982839 | no |
| 5d_25C | 7d_15C | 0.187119 | no |
| 5d_25C | 7d_30C | 0.741224 | no |
| 5d_25C | 10d_25C | 0.555681 | no |
| 7d_25C | 7d_15C | 0.210485 | no |
| 7d_25C | 7d_30C | 0.764620 | no |
| 7d_25C | 10d_25C | 0.536401 | no |
| 7d_15C | 7d_30C | 0.414943 | no |
| 7d_15C | 10d_25C | 0.037981 | yes |
| 7d_30C | 10d_25C | 0.290026 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 5074 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2258.t1 MVLGSEFPEPSRQPSEDISNSSNPLLPTLADDGPPQNDSPAPEAHSVLTRLYISHTLSTWNSRMFEFGAVLFLAS IFPGTLLYASIYALVRAFSAVALSSWLGAQVDRSDRLVAVRHSIVWQRVPVAISCLCFVATLSTDSWSLTIALFT VQGLLACMEKLAATANTVAVERDWAIVISESINVPRQDLNASMRRIDLFCKLLAPVFISLIDSISTPYAIWTVFT MNTASVLVEYLAIAQVYQSVPALTKTQAPTTQADDTNGKSDTRCLSSSLAPWKEYIASPVFLASFALSLLYLTVL SFGATMVTYLLHTGFTPLEVSYMRIGSVVAELSGTWTAPMVMNRIGPIRSGLWFLNWQFICIAAATVAFVFWDPS SQFVAGALITGVALSRIGLWGFDLSVQFLVQENIQEHARARFSATEMALQNVFEMLSFASTIAFPLPAQFRYPVM ISSGAVAVAAICFATYVRKERGHLLHRSRCMGGDKVSYRAIGSGSV* |
| Coding | >Pro_DTO377G3_2|g2258.t1 ATGGTTCTTGGGAGCGAGTTCCCAGAGCCTAGCCGGCAACCATCAGAAGACATCAGCAATTCCTCCAACCCTCTG TTGCCGACCTTGGCGGATGATGGCCCACCCCAAAATGATAGCCCAGCACCAGAAGCCCACTCAGTACTAACACGC CTATACATATCTCACACACTCTCAACATGGAACTCCCGCATGTTTGAATTCGGCGCCGTACTCTTCCTAGCTTCG ATCTTCCCGGGGACACTACTGTATGCTTCGATATACGCTCTAGTGCGGGCGTTTTCAGCCGTCGCGCTGTCGTCG TGGCTGGGTGCGCAAGTTGATCGCTCAGACCGGCTCGTTGCTGTGAGGCATTCCATTGTGTGGCAAAGAGTCCCT GTCGCGATCTCATGCTTATGCTTTGTGGCCACTCTGTCTACAGACTCTTGGTCGCTTACAATTGCCTTGTTCACC GTGCAGGGCTTACTGGCTTGTATGGAGAAATTGGCCGCTACGGCTAATACGGTGGCTGTGGAACGGGACTGGGCA ATCGTGATCTCGGAAAGTATCAATGTCCCTCGACAAGACTTGAACGCCTCTATGAGACGAATTGATCTCTTCTGC AAGCTCCTAGCACCAGTATTCATCTCCTTGATCGACAGCATATCAACCCCATATGCAATTTGGACAGTGTTTACC ATGAATACCGCATCTGTGCTGGTCGAGTATTTGGCCATTGCTCAGGTCTACCAATCAGTCCCGGCCTTGACCAAG ACACAAGCTCCTACAACACAAGCAGATGATACAAATGGCAAGAGCGATACCCGCTGCTTGTCAAGCTCACTAGCG CCCTGGAAAGAGTACATAGCAAGTCCCGTCTTCCTAGCATCCTTTGCCCTGAGCCTGCTCTACCTAACAGTCCTA TCCTTTGGCGCAACAATGGTAACATACCTGTTGCACACGGGCTTCACCCCGTTGGAGGTCAGCTATATGCGCATC GGCTCCGTGGTCGCCGAGCTATCTGGGACATGGACAGCGCCTATGGTCATGAACCGGATTGGTCCGATTCGCTCC GGGCTGTGGTTTCTGAATTGGCAGTTTATCTGCATCGCTGCTGCCACCGTGGCTTTCGTTTTCTGGGACCCTAGC TCGCAGTTCGTAGCGGGTGCGCTGATTACGGGCGTTGCTTTGAGTCGGATTGGGCTTTGGGGATTCGATTTGTCG GTCCAGTTTCTCGTGCAGGAGAATATCCAGGAACATGCCCGTGCCCGCTTCTCTGCTACTGAAATGGCGCTGCAG AATGTGTTCGAGATGCTTTCTTTTGCCTCGACTATTGCTTTCCCGCTGCCGGCCCAGTTCAGGTATCCCGTGATG ATCAGTTCTGGGGCTGTGGCGGTCGCTGCGATCTGTTTTGCGACGTATGTGCGCAAGGAACGGGGACACCTACTG CATCGATCACGCTGTATGGGCGGAGATAAAGTGTCATATCGAGCGATTGGATCTGGGTCGGTTTAG |
| Transcript | >Pro_DTO377G3_2|g2258.t1 ATGGTTCTTGGGAGCGAGTTCCCAGAGCCTAGCCGGCAACCATCAGAAGACATCAGCAATTCCTCCAACCCTCTG TTGCCGACCTTGGCGGATGATGGCCCACCCCAAAATGATAGCCCAGCACCAGAAGCCCACTCAGTACTAACACGC CTATACATATCTCACACACTCTCAACATGGAACTCCCGCATGTTTGAATTCGGCGCCGTACTCTTCCTAGCTTCG ATCTTCCCGGGGACACTACTGTATGCTTCGATATACGCTCTAGTGCGGGCGTTTTCAGCCGTCGCGCTGTCGTCG TGGCTGGGTGCGCAAGTTGATCGCTCAGACCGGCTCGTTGCTGTGAGGCATTCCATTGTGTGGCAAAGAGTCCCT GTCGCGATCTCATGCTTATGCTTTGTGGCCACTCTGTCTACAGACTCTTGGTCGCTTACAATTGCCTTGTTCACC GTGCAGGGCTTACTGGCTTGTATGGAGAAATTGGCCGCTACGGCTAATACGGTGGCTGTGGAACGGGACTGGGCA ATCGTGATCTCGGAAAGTATCAATGTCCCTCGACAAGACTTGAACGCCTCTATGAGACGAATTGATCTCTTCTGC AAGCTCCTAGCACCAGTATTCATCTCCTTGATCGACAGCATATCAACCCCATATGCAATTTGGACAGTGTTTACC ATGAATACCGCATCTGTGCTGGTCGAGTATTTGGCCATTGCTCAGGTCTACCAATCAGTCCCGGCCTTGACCAAG ACACAAGCTCCTACAACACAAGCAGATGATACAAATGGCAAGAGCGATACCCGCTGCTTGTCAAGCTCACTAGCG CCCTGGAAAGAGTACATAGCAAGTCCCGTCTTCCTAGCATCCTTTGCCCTGAGCCTGCTCTACCTAACAGTCCTA TCCTTTGGCGCAACAATGGTAACATACCTGTTGCACACGGGCTTCACCCCGTTGGAGGTCAGCTATATGCGCATC GGCTCCGTGGTCGCCGAGCTATCTGGGACATGGACAGCGCCTATGGTCATGAACCGGATTGGTCCGATTCGCTCC GGGCTGTGGTTTCTGAATTGGCAGTTTATCTGCATCGCTGCTGCCACCGTGGCTTTCGTTTTCTGGGACCCTAGC TCGCAGTTCGTAGCGGGTGCGCTGATTACGGGCGTTGCTTTGAGTCGGATTGGGCTTTGGGGATTCGATTTGTCG GTCCAGTTTCTCGTGCAGGAGAATATCCAGGAACATGCCCGTGCCCGCTTCTCTGCTACTGAAATGGCGCTGCAG AATGTGTTCGAGATGCTTTCTTTTGCCTCGACTATTGCTTTCCCGCTGCCGGCCCAGTTCAGGTATCCCGTGATG ATCAGTTCTGGGGCTGTGGCGGTCGCTGCGATCTGTTTTGCGACGTATGTGCGCAAGGAACGGGGACACCTACTG CATCGATCACGCTGTATGGGCGGAGATAAAGTGTCATATCGAGCGATTGGATCTGGGTCGGTTTAG |
| Gene | >Pro_DTO377G3_2|g2258.t1 ATGGTTCTTGGGAGCGAGTTCCCAGAGCCTAGCCGGCAACCATCAGAAGACATCAGCAATTCCTCCAACCCTCTG TTGCCGACCTTGGCGGATGATGGCCCACCCCAAAATGATAGCCCAGCACCAGAAGCCCACTCAGTACTAACACGC CTATACATATCTCACACACTCTCAACATGGAACTCCCGCATGTTTGAATTCGGCGCCGTACTCTTCCTAGCTTCG ATCTTCCCGGGGACACTACTGTATGCTTCGATATACGCTCTAGTGCGGGCGTTTTCAGCCGTCGCGCTGTCGTCG TGGCTGGGTGCGCAAGTTGATCGCTCAGACCGGCTCGTTGCTGTGAGGCATTCCATTGGTAGGTTGGAATCGTTT CGGATACTTCAATATGTACCGAGTATCAAGGCCAATGGCTAATTAAAGGAGTAGTGTGGCAAAGAGTCCCTGTCG CGATCTCATGCTTATGCTTTGTGGCCACTCTGTCTACAGACTCTTGGTCGCTTACAATTGCCTTGTTCACCGTGC AGGGCTTACTGGCTTGTATGGAGAAATTGGCCGCTACGGCTAATACGGTGGCTGTGGAACGGGACTGGGTATGTA CGAGGAATCGTATTTGGGTTGTCTGGTTTCCATGCATCCGATATACAATCTTATTTTAGGAAGAGATGTCGCTGA TAATTTGACACTAGGCAATCGTGATCTCGGAAAGTATCAATGTCCCTCGACAAGGTGAGAACCCTGAAGCTAGCT GAAGCTCCGCAATATCTAACTTCGAACCACAGACTTGAACGCCTCTATGAGACGAATTGATCTCTTCTGCAAGCT CCTAGCACCAGTATTCATCTCCTTGATCGACAGCATATCAACCCCATATGCAATTTGGACAGTGTTTACCATGAA TACCGCATCTGTGCTGGTCGAGTATTTGGCCATTGCTCAGGTCTACCAATCAGTCCCGGCCTTGACCAAGACACA AGCTCCTACAACACAAGCAGATGATACAAATGGCAAGAGCGATACCCGCTGCTTGTCAAGCTCACTAGCGCCCTG GAAAGAGTACATAGCAAGTCCCGTCTTCCTAGCATCCTTTGCCCTGAGCCTGCTCTACCTAACAGTCCTATCCTT TGGCGCAACAATGGTAACATACCTGTTGCACACGGGCTTCACCCCGTTGGAGGTCAGCTATATGCGCATCGGCTC CGTGGTCGCCGAGCTATCTGGGACATGGACAGCGCCTATGGTCATGAACCGGATTGGTCCGATTCGCTCCGGGCT GTGGTTTCTGAATTGGCAGTTTATCTGCATCGCTGCTGCCACCGTGGCTTTCGTTTTCTGGGACCCTAGCTCGCA GTTCGTAGCGGGTGCGCTGATTACGGGCGTTGCTTTGAGTCGGATTGGGCTTTGGGGATTCGATTTGTCGGTCCA GTTTCTCGTGCAGGAGGTAAGTGGCTTTTCCGTATTCTTGACTTGTGCATGTGCTAAACTTGTTGGGTGATGTAG AATATCCAGGAACATGCCCGTGCCCGCTTCTCTGCTACTGAAATGGCGCTGCAGAATGTGTTCGAGATGCTTTCT TTTGCCTCGACTATTGCTTTCCCGCTGCCGGCCCAGTTCAGGTATCCCGTGATGATCAGTTCTGGGGCTGTGGCG GTCGCTGCGATCTGTTTTGCGACGTATGTGCGCAAGGAACGGGGACACCTACTGCATCGATCACGCTGTATGGGC GGAGATAAAGTGTCATATCGAGCGATTGGATCTGGGTCGGTTTAG |