© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2253.t1 |
| Gene name | |
| Location | scaffold_02:2055865..2056911 |
| Strand | - |
| Gene length (bp) | 1046 |
| Transcript length (bp) | 924 |
| Coding sequence length (bp) | 924 |
| Protein length (aa) | 308 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00378 | ECH_1 | Enoyl-CoA hydratase/isomerase | 1.4E-41 | 50 | 306 |
| PF16113 | ECH_2 | Enoyl-CoA hydratase/isomerase | 2.7E-26 | 51 | 224 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 277.07 | 169.64 | 384.51 |
| 5d_25C | Five days - 25 degrees Celsius | 175.33 | 107.92 | 242.74 |
| 7d_25C | Seven days - 25 degrees Celsius | 125.82 | 76.83 | 174.80 |
| 10d_25C | Ten days - 25 degrees Celsius | 99.94 | 59.91 | 139.97 |
| 7d_15C | Seven days - 15 degrees Celsius | 228.42 | 140.44 | 316.40 |
| 7d_30C | Seven days - 30 degrees Celsius | 152.46 | 93.75 | 211.17 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.024892 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.440800 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.124534 | no |
| 5d_25C | 7d_15C | 0.242930 | no |
| 5d_25C | 7d_30C | 0.586722 | no |
| 5d_25C | 10d_25C | 0.004840 | yes |
| 7d_25C | 7d_15C | 0.002761 | yes |
| 7d_25C | 7d_30C | 0.426538 | no |
| 7d_25C | 10d_25C | 0.341984 | no |
| 7d_15C | 7d_30C | 0.050710 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.039986 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2253.t1 MSSRLVRLSAPLAHLRATAVPARVFVSRYSTSTEGDIIKTHQIPAPGSGHVRVLQLNRPQARNAISTELLDTLAK HVEAIAAEKGNGPTRALVIASNVDAAFCAGADLKERANMSMADTEDFLLKLRSTFKSLASLEIPTISAVSSVALG GGLELALCTHLRVFSSSSVVGLPETRLAIIPGAGGTYRLPPIIGVNRARDLIITGRRVTGPEAYFIGLCDRLVEV LPEEETQDGVARERVLLESIKLALDICEGGPIAIKMAMQAVEAHGLGERSENAAYEGVIETDDRYEALRAFVEKR KPAFRGR* |
| Coding | >Pro_DTO377G3_2|g2253.t1 ATGTCATCGCGCCTCGTCCGCCTCTCCGCACCTCTCGCCCACCTCCGGGCGACCGCGGTGCCTGCCCGGGTCTTC GTCTCTCGTTACAGCACAAGCACAGAAGGAGACATTATCAAGACCCACCAGATCCCGGCCCCAGGCTCAGGGCAT GTGCGCGTGCTGCAGCTGAACAGGCCCCAAGCTCGCAACGCGATCTCGACCGAGTTACTCGACACGCTCGCGAAG CATGTGGAAGCCATCGCCGCCGAAAAAGGCAACGGGCCAACCCGGGCGTTGGTTATAGCGAGTAACGTAGACGCA GCATTCTGTGCGGGTGCAGACCTGAAGGAACGCGCCAACATGAGCATGGCCGATACCGAAGACTTCCTCCTCAAA CTCCGCTCCACATTCAAAAGCCTTGCTTCCCTCGAAATCCCCACCATCTCCGCCGTCTCGTCCGTGGCTCTCGGC GGCGGCCTCGAGCTCGCGCTGTGCACGCACCTGCGCGTTTTCTCGTCCTCTAGCGTCGTTGGTCTTCCCGAAACA CGTCTCGCTATTATCCCCGGCGCCGGCGGTACATACCGACTGCCTCCGATCATTGGTGTGAACCGCGCCCGGGAC TTGATCATCACCGGCCGCCGGGTGACCGGACCTGAGGCTTACTTCATTGGGCTCTGTGACCGGCTCGTGGAGGTG CTTCCTGAAGAGGAGACACAGGATGGCGTTGCGCGTGAACGCGTCCTGCTGGAGAGTATCAAGCTCGCACTGGAT ATCTGTGAGGGTGGCCCTATTGCTATCAAGATGGCGATGCAGGCTGTCGAGGCCCATGGTCTGGGTGAGCGGTCG GAGAATGCGGCCTATGAGGGAGTCATTGAGACTGATGATCGGTATGAAGCGCTGCGCGCCTTTGTTGAGAAGCGG AAGCCGGCGTTCCGTGGGAGGTAA |
| Transcript | >Pro_DTO377G3_2|g2253.t1 ATGTCATCGCGCCTCGTCCGCCTCTCCGCACCTCTCGCCCACCTCCGGGCGACCGCGGTGCCTGCCCGGGTCTTC GTCTCTCGTTACAGCACAAGCACAGAAGGAGACATTATCAAGACCCACCAGATCCCGGCCCCAGGCTCAGGGCAT GTGCGCGTGCTGCAGCTGAACAGGCCCCAAGCTCGCAACGCGATCTCGACCGAGTTACTCGACACGCTCGCGAAG CATGTGGAAGCCATCGCCGCCGAAAAAGGCAACGGGCCAACCCGGGCGTTGGTTATAGCGAGTAACGTAGACGCA GCATTCTGTGCGGGTGCAGACCTGAAGGAACGCGCCAACATGAGCATGGCCGATACCGAAGACTTCCTCCTCAAA CTCCGCTCCACATTCAAAAGCCTTGCTTCCCTCGAAATCCCCACCATCTCCGCCGTCTCGTCCGTGGCTCTCGGC GGCGGCCTCGAGCTCGCGCTGTGCACGCACCTGCGCGTTTTCTCGTCCTCTAGCGTCGTTGGTCTTCCCGAAACA CGTCTCGCTATTATCCCCGGCGCCGGCGGTACATACCGACTGCCTCCGATCATTGGTGTGAACCGCGCCCGGGAC TTGATCATCACCGGCCGCCGGGTGACCGGACCTGAGGCTTACTTCATTGGGCTCTGTGACCGGCTCGTGGAGGTG CTTCCTGAAGAGGAGACACAGGATGGCGTTGCGCGTGAACGCGTCCTGCTGGAGAGTATCAAGCTCGCACTGGAT ATCTGTGAGGGTGGCCCTATTGCTATCAAGATGGCGATGCAGGCTGTCGAGGCCCATGGTCTGGGTGAGCGGTCG GAGAATGCGGCCTATGAGGGAGTCATTGAGACTGATGATCGGTATGAAGCGCTGCGCGCCTTTGTTGAGAAGCGG AAGCCGGCGTTCCGTGGGAGGTAA |
| Gene | >Pro_DTO377G3_2|g2253.t1 ATGTCATCGCGCCTCGTCCGCCTCTCCGCACCTCTCGCCCACCTCCGGGCGACCGCGGTGCCTGCCCGGGTCTTC GTCTCTCGTTACAGCACAAGCACAGAAGGAGACATTATCAAGACCCACCAGATCCCGGCCCCAGGCTCAGGGCAT GTGCGCGTGCTGCAGCTGAACAGGCCCCAAGCTCGCAACGCGATCTCGACCGAGTTACTCGACACGCTCGCGAAG CATGTGGAAGCCATCGCCGCCGAAAAAGGCAACGGGCCAACCCGGGCGTTGGTTATAGCGAGTAACGTAGACGCA GCATTCTGTGCGGGTGCAGACCTGAAGGAACGCGCCAACATGAGCATGGCCGAGTGAGAAACAACCCTATACCCG GTTTCCCCGGTGCCCTGGTGCCCGGTGCCCGGTGTACCCGGGCTTGAAGCCTTCAATTTACGCGAACATATGCAG CTAACTATCCAACGCGACGATTCAGTACCGAAGACTTCCTCCTCAAACTCCGCTCCACATTCAAAAGCCTTGCTT CCCTCGAAATCCCCACCATCTCCGCCGTCTCGTCCGTGGCTCTCGGCGGCGGCCTCGAGCTCGCGCTGTGCACGC ACCTGCGCGTTTTCTCGTCCTCTAGCGTCGTTGGTCTTCCCGAAACACGTCTCGCTATTATCCCCGGCGCCGGCG GTACATACCGACTGCCTCCGATCATTGGTGTGAACCGCGCCCGGGACTTGATCATCACCGGCCGCCGGGTGACCG GACCTGAGGCTTACTTCATTGGGCTCTGTGACCGGCTCGTGGAGGTGCTTCCTGAAGAGGAGACACAGGATGGCG TTGCGCGTGAACGCGTCCTGCTGGAGAGTATCAAGCTCGCACTGGATATCTGTGAGGGTGGCCCTATTGCTATCA AGATGGCGATGCAGGCTGTCGAGGCCCATGGTCTGGGTGAGCGGTCGGAGAATGCGGCCTATGAGGGAGTCATTG AGACTGATGATCGGTATGAAGCGCTGCGCGCCTTTGTTGAGAAGCGGAAGCCGGCGTTCCGTGGGAGGTAA |