© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2249.t1 |
| Gene name | |
| Location | scaffold_02:2045979..2047964 |
| Strand | + |
| Gene length (bp) | 1985 |
| Transcript length (bp) | 1677 |
| Coding sequence length (bp) | 1677 |
| Protein length (aa) | 559 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02133 | Transp_cyt_pur | Permease for cytosine/purines, uracil, thiamine, allantoin | 9.8E-102 | 39 | 487 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 46 | 68 | 22 |
| 2 | 73 | 95 | 22 |
| 3 | 132 | 154 | 22 |
| 4 | 169 | 191 | 22 |
| 5 | 204 | 226 | 22 |
| 6 | 241 | 263 | 22 |
| 7 | 275 | 297 | 22 |
| 8 | 332 | 354 | 22 |
| 9 | 375 | 397 | 22 |
| 10 | 402 | 421 | 19 |
| 11 | 449 | 470 | 21 |
| 12 | 480 | 502 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.21 | 1.76 | 8.66 |
| 5d_25C | Five days - 25 degrees Celsius | 5.33 | 1.72 | 8.94 |
| 7d_25C | Seven days - 25 degrees Celsius | 7.26 | 2.65 | 11.87 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.88 | 0.50 | 5.27 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.59 | 3.89 | 17.29 |
| 7d_30C | Seven days - 30 degrees Celsius | 7.63 | 2.73 | 12.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.969100 | no |
| 3d_25C | 7d_25C | 0.406784 | no |
| 3d_25C | 7d_15C | 0.034125 | yes |
| 3d_25C | 7d_30C | 0.323344 | no |
| 3d_25C | 10d_25C | 0.164348 | no |
| 5d_25C | 7d_25C | 0.467872 | no |
| 5d_25C | 7d_15C | 0.050710 | no |
| 5d_25C | 7d_30C | 0.384597 | no |
| 5d_25C | 10d_25C | 0.160342 | no |
| 7d_25C | 7d_15C | 0.330530 | no |
| 7d_25C | 7d_30C | 0.930059 | no |
| 7d_25C | 10d_25C | 0.024892 | yes |
| 7d_15C | 7d_30C | 0.412713 | no |
| 7d_15C | 10d_25C | 0.001278 | yes |
| 7d_30C | 10d_25C | 0.017204 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2249.t1 MSKLSRLHELLLVKRTQRDGIERPVDMLDNDSIRPTSVKDRTWSQLTYIMFWFSATANVSNLYTASTGMAMGLTM WEAIGCSFGGQILAGALMAVNGRAGAMYRIPFPVLCRSSFGHWGALWPTFNRAVMSIVWNGVNTVQGGQCLYVFL HAIFPSIENIPDKMGSKSALTSAQMMCFFIYWLVNCAFLVVPVPRMKSLVYIKVVVYFGAAFAMLGWTVSLAGGS LKTINAPSEIKGTEKSYLIFKFLFLGLASCGTFISNASDLQRYATKPNDVLIGQIISFPLSNFLVAILGNLIASA SKAIFGKLIWNPLQFLDKLMEGERYTSGNRTACAFISLAFVYSTVFSAIFENSIPAGNDIAALLPKYISIKRGFF ICAVLSYAICPWYLLASASIFITFLSSYQIFLSAITGILICDYYLIRRGLLNIPALYISSPSPYRYFHGFNPRAF LTYVIAIAPNFYGFLFQMGVKAPLGIKRFYYIAYPTGLIIAFVVYYLSCLAFPPPDMKQASGWMEPKDFVEDHDA SGSDESTIDAVDPDFAEKGAVAVARPAGEKGSF* |
| Coding | >Pro_DTO377G3_2|g2249.t1 ATGTCCAAACTATCGCGACTCCATGAGCTCTTACTAGTGAAAAGAACCCAGCGGGATGGCATCGAGCGCCCCGTT GATATGCTGGATAATGACTCTATCCGACCGACTTCAGTAAAGGATCGAACATGGTCCCAACTCACCTATATCATG TTCTGGTTCTCGGCGACTGCGAACGTCAGCAATCTGTACACAGCGTCCACGGGAATGGCCATGGGATTGACCATG TGGGAAGCGATCGGATGCTCGTTCGGTGGTCAGATCCTCGCCGGTGCCTTGATGGCTGTGAACGGCCGTGCTGGC GCCATGTACCGCATTCCGTTCCCCGTTCTATGTCGCTCCAGCTTTGGGCATTGGGGAGCACTGTGGCCGACTTTC AATCGGGCGGTCATGTCAATTGTGTGGAACGGTGTCAATACCGTTCAAGGAGGACAATGTTTATATGTCTTTCTC CATGCGATTTTCCCTTCTATTGAAAACATCCCGGATAAGATGGGATCCAAGTCGGCTTTGACTTCAGCACAAATG ATGTGTTTCTTCATCTATTGGCTTGTCAATTGCGCATTCTTAGTGGTGCCTGTACCAAGAATGAAATCCCTGGTC TACATCAAAGTCGTCGTTTACTTCGGCGCAGCATTTGCTATGCTGGGATGGACTGTGTCTCTCGCCGGTGGTTCT TTGAAGACAATCAATGCGCCCTCGGAGATAAAGGGCACGGAAAAAAGCTATCTCATTTTTAAGTTCCTCTTCTTG GGACTCGCAAGTTGTGGAACTTTCATCTCCAATGCGTCCGATCTCCAGCGATACGCTACAAAGCCCAACGACGTC CTCATCGGCCAGATTATCAGCTTTCCACTGTCGAACTTCCTAGTTGCCATTCTAGGTAACCTTATCGCGTCAGCT AGCAAAGCTATCTTTGGAAAGCTCATCTGGAACCCGCTGCAGTTCTTGGACAAATTGATGGAAGGAGAGCGATAC ACCTCTGGCAACCGCACGGCCTGTGCTTTTATTTCTCTGGCATTCGTGTATTCGACTGTCTTCTCTGCCATTTTT GAGAACTCTATCCCTGCGGGTAACGATATTGCAGCCCTACTACCAAAATACATTTCAATAAAACGAGGATTCTTC ATCTGCGCCGTCCTCTCCTACGCAATCTGCCCCTGGTATCTCCTCGCATCAGCCTCAATTTTCATCACATTCCTC TCCTCCTACCAAATCTTTCTCTCAGCAATCACCGGCATTCTCATCTGCGACTACTACCTAATCCGCCGAGGGCTA CTCAACATTCCCGCCCTATACATCTCAAGCCCAAGTCCGTACCGATACTTCCACGGATTCAACCCGCGAGCATTC TTGACCTACGTTATTGCCATTGCGCCAAACTTCTACGGGTTCCTTTTCCAGATGGGCGTCAAGGCGCCTCTAGGT ATCAAGCGATTCTACTATATCGCTTACCCTACCGGTCTCATAATCGCTTTTGTTGTTTATTACCTGTCGTGTCTG GCCTTCCCCCCGCCTGATATGAAGCAGGCGTCTGGCTGGATGGAGCCTAAGGACTTCGTGGAGGATCATGATGCT TCTGGAAGTGATGAGTCTACTATTGATGCCGTTGACCCTGACTTCGCGGAGAAGGGGGCTGTTGCGGTTGCTAGA CCAGCTGGCGAAAAGGGTTCGTTCTGA |
| Transcript | >Pro_DTO377G3_2|g2249.t1 ATGTCCAAACTATCGCGACTCCATGAGCTCTTACTAGTGAAAAGAACCCAGCGGGATGGCATCGAGCGCCCCGTT GATATGCTGGATAATGACTCTATCCGACCGACTTCAGTAAAGGATCGAACATGGTCCCAACTCACCTATATCATG TTCTGGTTCTCGGCGACTGCGAACGTCAGCAATCTGTACACAGCGTCCACGGGAATGGCCATGGGATTGACCATG TGGGAAGCGATCGGATGCTCGTTCGGTGGTCAGATCCTCGCCGGTGCCTTGATGGCTGTGAACGGCCGTGCTGGC GCCATGTACCGCATTCCGTTCCCCGTTCTATGTCGCTCCAGCTTTGGGCATTGGGGAGCACTGTGGCCGACTTTC AATCGGGCGGTCATGTCAATTGTGTGGAACGGTGTCAATACCGTTCAAGGAGGACAATGTTTATATGTCTTTCTC CATGCGATTTTCCCTTCTATTGAAAACATCCCGGATAAGATGGGATCCAAGTCGGCTTTGACTTCAGCACAAATG ATGTGTTTCTTCATCTATTGGCTTGTCAATTGCGCATTCTTAGTGGTGCCTGTACCAAGAATGAAATCCCTGGTC TACATCAAAGTCGTCGTTTACTTCGGCGCAGCATTTGCTATGCTGGGATGGACTGTGTCTCTCGCCGGTGGTTCT TTGAAGACAATCAATGCGCCCTCGGAGATAAAGGGCACGGAAAAAAGCTATCTCATTTTTAAGTTCCTCTTCTTG GGACTCGCAAGTTGTGGAACTTTCATCTCCAATGCGTCCGATCTCCAGCGATACGCTACAAAGCCCAACGACGTC CTCATCGGCCAGATTATCAGCTTTCCACTGTCGAACTTCCTAGTTGCCATTCTAGGTAACCTTATCGCGTCAGCT AGCAAAGCTATCTTTGGAAAGCTCATCTGGAACCCGCTGCAGTTCTTGGACAAATTGATGGAAGGAGAGCGATAC ACCTCTGGCAACCGCACGGCCTGTGCTTTTATTTCTCTGGCATTCGTGTATTCGACTGTCTTCTCTGCCATTTTT GAGAACTCTATCCCTGCGGGTAACGATATTGCAGCCCTACTACCAAAATACATTTCAATAAAACGAGGATTCTTC ATCTGCGCCGTCCTCTCCTACGCAATCTGCCCCTGGTATCTCCTCGCATCAGCCTCAATTTTCATCACATTCCTC TCCTCCTACCAAATCTTTCTCTCAGCAATCACCGGCATTCTCATCTGCGACTACTACCTAATCCGCCGAGGGCTA CTCAACATTCCCGCCCTATACATCTCAAGCCCAAGTCCGTACCGATACTTCCACGGATTCAACCCGCGAGCATTC TTGACCTACGTTATTGCCATTGCGCCAAACTTCTACGGGTTCCTTTTCCAGATGGGCGTCAAGGCGCCTCTAGGT ATCAAGCGATTCTACTATATCGCTTACCCTACCGGTCTCATAATCGCTTTTGTTGTTTATTACCTGTCGTGTCTG GCCTTCCCCCCGCCTGATATGAAGCAGGCGTCTGGCTGGATGGAGCCTAAGGACTTCGTGGAGGATCATGATGCT TCTGGAAGTGATGAGTCTACTATTGATGCCGTTGACCCTGACTTCGCGGAGAAGGGGGCTGTTGCGGTTGCTAGA CCAGCTGGCGAAAAGGGTTCGTTCTGA |
| Gene | >Pro_DTO377G3_2|g2249.t1 ATGTCCAAACTATCGCGACTCCATGAGCTCTTACTAGTGAAAAGAACCCAGCGGGATGGCATCGAGCGCCCCGTT GATATGCTGGATAATGACTCTATCCGACCGACTTCAGTAAAGGATCGAACATGGTCCCAACTCACCTATATCATG TTCTGGTTCTCGGCGACTGCGAACGTCAGCAATCTGTACACAGCGTCCACGGGAATGGCCATGGGATTGACCATG TGGGAAGCGATCGGATGCTCGTTCGGTGGTCAGATCCTCGCCGGTGCCTTGATGGCTGTGAACGGCCGTGCTGGC GCCATGTACCGCATTCCGTTCCCCGTTCTATGTCGCTCCAGCTTTGGGCATTGGGGAGCACTGTGGCCGACTTTC AATCGGGCGGTCATGTCAATTGTGTGGAACGGTGTCAATACCGTTCAAGGAGGACAATGTTTATAGTGAGTCTTT TTTTTTCTTAGTCTCGTTCTTTCCCTGGTGAGGGAAGCACTGACCGTGTGGTTGTTGACTTTCGTTTCTAGTGTC TTTCTCCATGCGATTTTCCCTTCTATTGAAAACATCCCGGATAAGATGGGATCCAAGTCGGCTTTGACTTCAGCA CAAATGATGTGTTTCTTCATCTATTGGTACAGTGGCTAGTATCTCAATGCTTGATCTACTGCTAACTAGTCTCCA CAGGCTTGTCAATTGCGCATTCTTAGTGGTGCCTGTACCAAGAATGAAATCCCTGGTCTACATCAAAGTCGTCGT TTACTTCGGCGCAGCATTTGCTATGCTGGGATGGACTGTGTCTCTCGCCGGTGGTTCTTTGAAGACAATCAATGC GCCCTCGGAGATAAAGGGCACGGAAAAAAGCTATCTCATTTTTAAGTTCCTCTTCTTGGGACTCGCAAGTTGTGG AACTTTCATCTCCAATGCGTCCGATCTCCAGCGATACGCTACAAAGCCCAACGACGTCCTCATCGGCCAGATTAT CAGCTTTCCACTGTCGAACTTCCTAGTTGCCATTCTAGGTAACCTTATCGCGTCAGCTAGCAAAGCTATCTTTGG AAAGGTTTGTCATATCAAAAGCCTTGTTGAAAGAACTAAGGACTGACGAAATCCTCTAGCTCATCTGGAACCCGC TGCAGTTCTTGGACAAATTGATGGAAGGAGAGCGATACACCTCTGGCAACCGCACGGCCTGTGCTTTTATTTCTC TGGCATTCGTGTATTCGACTGTCTTCTCTGCCATTTTTGAGAACTCTATCCCGTAAGGATCACCTTCTCCCACAT TTCTATGCCATATACTAACAACCTTCAGTGCGGGTAACGATATTGCAGCCCTACTACCAAAATACATTTCAATAA AACGAGGATTCTTCATCTGCGCCGGTAAGAAAAGAACCAAAGACTCAAAAAATTCCATTGCCTCGACCCAAAACT AACAACCAAACCTACTAGTCCTCTCCTACGCAATCTGCCCCTGGTATCTCCTCGCATCAGCCTCAATTTTCATCA CATTCCTCTCCTCCTACCAAATCTTTCTCTCAGCAATCACCGGCATTCTCATCTGCGACTACTACCTAATCCGCC GAGGGCTACTCAACATTCCCGCCCTATACATCTCAAGCCCAAGTCCGTACCGATACTTCCACGGATTCAACCCGC GAGCATTCTTGACCTACGTTATTGCCATTGCGCCAAACTTCTACGGGTTCCTTTTCCAGATGGGCGTCAAGGCGC CTCTAGGTATCAAGCGATTCTACTATATCGCTTACCCTACCGGTCTCATAATCGCTTTTGTTGTTTATTACCTGT CGTGTCTGGCCTTCCCCCCGCCTGATATGAAGCAGGCGTCTGGCTGGATGGAGCCTAAGGACTTCGTGGAGGATC ATGATGCTTCTGGAAGTGATGAGTCTACTATTGATGCCGTTGACCCTGACTTCGCGGAGAAGGGGGCTGTTGCGG TTGCTAGACCAGCTGGCGAAAAGGGTTCGTTCTGA |