© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2225.t1 |
| Gene name | |
| Location | scaffold_02:1983951..1984700 |
| Strand | - |
| Gene length (bp) | 749 |
| Transcript length (bp) | 450 |
| Coding sequence length (bp) | 450 |
| Protein length (aa) | 150 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10233 | Cg6151-P | Uncharacterized conserved protein CG6151-P | 1.2E-41 | 19 | 131 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 33 | 21 |
| 2 | 43 | 65 | 22 |
| 3 | 85 | 102 | 17 |
| 4 | 106 | 128 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 124.01 | 65.76 | 182.26 |
| 5d_25C | Five days - 25 degrees Celsius | 113.40 | 59.05 | 167.75 |
| 7d_25C | Seven days - 25 degrees Celsius | 128.28 | 68.59 | 187.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 130.54 | 70.46 | 190.63 |
| 7d_15C | Seven days - 15 degrees Celsius | 138.13 | 71.81 | 204.46 |
| 7d_30C | Seven days - 30 degrees Celsius | 155.17 | 85.10 | 225.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.813002 | no |
| 3d_25C | 7d_25C | 0.933732 | no |
| 3d_25C | 7d_15C | 0.770033 | no |
| 3d_25C | 7d_30C | 0.445576 | no |
| 3d_25C | 10d_25C | 0.896835 | no |
| 5d_25C | 7d_25C | 0.724216 | no |
| 5d_25C | 7d_15C | 0.548951 | no |
| 5d_25C | 7d_30C | 0.261341 | no |
| 5d_25C | 10d_25C | 0.675634 | no |
| 7d_25C | 7d_15C | 0.846887 | no |
| 7d_25C | 7d_30C | 0.520498 | no |
| 7d_25C | 10d_25C | 0.965724 | no |
| 7d_15C | 7d_30C | 0.731910 | no |
| 7d_15C | 10d_25C | 0.884779 | no |
| 7d_30C | 10d_25C | 0.570290 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2225.t1 MTLAEEFKSRNFSIYGQWTGVLCIILCLALGIANIFSFNVVLIIISVISIASAFVILFIEVPFLLRICPTSSTFD SFIRRFTTNWMRALIYAVLGGVQLISLAERASSLIAGAVFLLIASVFYALAGLTKQEFVGSKTLGGQGVAQMIV* |
| Coding | >Pro_DTO377G3_2|g2225.t1 ATGACGCTAGCTGAGGAGTTCAAATCGCGAAATTTCAGCATCTATGGACAATGGACGGGTGTGCTATGCATTATC CTTTGCCTTGCGCTAGGGATTGCGAACATCTTTTCATTCAACGTGGTTCTGATTATCATCAGTGTCATCAGCATT GCCTCGGCATTCGTCATTCTCTTCATAGAAGTGCCCTTCCTCCTCCGAATTTGTCCCACATCCTCGACCTTCGAT TCCTTTATCCGCCGCTTCACAACTAACTGGATGCGCGCCCTCATTTACGCCGTCCTTGGTGGTGTCCAACTTATC AGTCTTGCCGAAAGGGCTTCTAGCTTGATTGCTGGTGCCGTCTTCCTTCTCATCGCGTCTGTTTTCTATGCACTC GCAGGCCTGACGAAGCAAGAGTTTGTTGGTAGCAAGACCCTAGGTGGCCAGGGAGTTGCACAGATGATTGTCTGA |
| Transcript | >Pro_DTO377G3_2|g2225.t1 ATGACGCTAGCTGAGGAGTTCAAATCGCGAAATTTCAGCATCTATGGACAATGGACGGGTGTGCTATGCATTATC CTTTGCCTTGCGCTAGGGATTGCGAACATCTTTTCATTCAACGTGGTTCTGATTATCATCAGTGTCATCAGCATT GCCTCGGCATTCGTCATTCTCTTCATAGAAGTGCCCTTCCTCCTCCGAATTTGTCCCACATCCTCGACCTTCGAT TCCTTTATCCGCCGCTTCACAACTAACTGGATGCGCGCCCTCATTTACGCCGTCCTTGGTGGTGTCCAACTTATC AGTCTTGCCGAAAGGGCTTCTAGCTTGATTGCTGGTGCCGTCTTCCTTCTCATCGCGTCTGTTTTCTATGCACTC GCAGGCCTGACGAAGCAAGAGTTTGTTGGTAGCAAGACCCTAGGTGGCCAGGGAGTTGCACAGATGATTGTCTGA |
| Gene | >Pro_DTO377G3_2|g2225.t1 ATGACGCTAGCTGAGGAGTTCAAATCGCGAAATTTCAGTAAGTTCCCACATTCTGCAATACCATATCTCAACCTG CTAACCGTGCTGGTCTTCTTAGGCATCTATGGACAATGGTTAGTCTACCGCGTTGCCTCTTAACACTCCGTGTCC TTACAAGCCTGAATAATGTCATGAGAGAGCATTTCGCATTTTGATCAAATGATCAAATGCCATTTGCTACCTCGT GAGGTGGCCTGGACCCTTCAATCACTCCCGAAAATCACTTGCGCATATAAATGAATCGGTCTGACGCAAGATCTA GGACGGGTGTGCTATGCATTATCCTTTGCCTTGCGCTAGGGATTGCGAACATCTTTTCATTCAACGTGGTTCTGA TTATCATCAGTGTCATCAGCATGTGAGTCGCATTCATTTCTCGCGATTCATTGCGAAGCCTAACGTGTCTCAGTG CCTCGGCATTCGTCATTCTCTTCATAGAAGTGCCCTTCCTCCTCCGAATTTGTCCCACATCCTCGACCTTCGATT CCTTTATCCGCCGCTTCACAACTAACTGGATGCGCGCCCTCATTTACGCCGTCCTTGGTGGTGTCCAACTTATCA GTCTTGCCGAAAGGGCTTCTAGCTTGATTGCTGGTGCCGTCTTCCTTCTCATCGCGTCTGTTTTCTATGCACTCG CAGGCCTGACGAAGCAAGAGTTTGTTGGTAGCAAGACCCTAGGTGGCCAGGGAGTTGCACAGATGATTGTCTGA |