© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g221.t1 |
| Gene name | |
| Location | scaffold_01:575454..576484 |
| Strand | + |
| Gene length (bp) | 1030 |
| Transcript length (bp) | 969 |
| Coding sequence length (bp) | 969 |
| Protein length (aa) | 323 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF15916 | DUF4743 | Domain of unknown function (DUF4743) | 2.4E-13 | 26 | 135 |
| PF00293 | NUDIX | NUDIX domain | 6.1E-11 | 148 | 272 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 40.82 | 21.78 | 59.86 |
| 5d_25C | Five days - 25 degrees Celsius | 39.24 | 20.73 | 57.76 |
| 7d_25C | Seven days - 25 degrees Celsius | 33.25 | 16.84 | 49.66 |
| 10d_25C | Ten days - 25 degrees Celsius | 26.80 | 12.95 | 40.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 56.95 | 32.03 | 81.87 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.91 | 13.45 | 42.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.924821 | no |
| 3d_25C | 7d_25C | 0.507695 | no |
| 3d_25C | 7d_15C | 0.200770 | no |
| 3d_25C | 7d_30C | 0.177837 | no |
| 3d_25C | 10d_25C | 0.124667 | no |
| 5d_25C | 7d_25C | 0.616626 | no |
| 5d_25C | 7d_15C | 0.151856 | no |
| 5d_25C | 7d_30C | 0.245212 | no |
| 5d_25C | 10d_25C | 0.184143 | no |
| 7d_25C | 7d_15C | 0.028642 | yes |
| 7d_25C | 7d_30C | 0.611086 | no |
| 7d_25C | 10d_25C | 0.517891 | no |
| 7d_15C | 7d_30C | 0.004840 | yes |
| 7d_15C | 10d_25C | 0.003625 | yes |
| 7d_30C | 10d_25C | 0.928960 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g221.t1 MGKSNLDLVGECDNFPYYEDDRDVYTENLKNYHAFKVSGYDCTLGYILNAVVEKFPWSEKSWAIDSTAQTVTLVT PEGATPAHRSKLVAADIAEAVKQKKFEVLQGWRNETYAVYGPGGEFLLEMERAATPLFGIVSYGAHLTGYVQDES GIKIWVPRRAKNKQTYPSLLDNTVAGGMCTGETPFECIVREAMEEASLPESVVRAATVSVGCVTYSHVRDVRAGG ETGLIQPEIEYVYELRLDPETTPKPGDNEVEEFKLLSIPEVQAALARGEFKPNCANIMIDFFVRHGLLTPENEPD FLQIVARLHRRLEYPTASHCAR* |
| Coding | >Pro_DTO377G3_2|g221.t1 ATGGGCAAATCCAATTTAGACCTGGTCGGCGAATGCGATAACTTCCCCTACTACGAGGATGATCGCGACGTCTAC ACGGAGAACCTGAAGAACTATCATGCATTCAAAGTCTCCGGATACGACTGTACACTCGGTTATATTCTCAATGCA GTCGTTGAGAAATTTCCCTGGTCGGAAAAGAGCTGGGCCATTGACTCGACTGCGCAGACCGTGACGCTAGTGACA CCGGAGGGAGCCACCCCGGCACACCGGAGCAAGCTCGTCGCAGCAGACATAGCCGAAGCCGTGAAACAAAAAAAG TTCGAAGTGCTGCAAGGCTGGCGCAACGAGACCTACGCAGTCTACGGCCCGGGCGGAGAATTCCTACTCGAGATG GAGCGCGCTGCGACCCCACTCTTCGGCATCGTATCCTACGGCGCCCATCTTACGGGCTACGTTCAGGATGAATCC GGTATCAAGATCTGGGTCCCACGCCGCGCAAAGAACAAGCAGACCTACCCAAGCCTCCTTGATAACACCGTCGCC GGCGGTATGTGCACCGGCGAGACGCCGTTTGAGTGTATAGTCCGCGAAGCTATGGAAGAGGCATCCTTGCCCGAG TCGGTGGTGCGCGCTGCGACTGTCTCCGTGGGCTGTGTTACGTACTCACATGTACGGGATGTACGAGCGGGCGGC GAGACGGGCCTCATTCAGCCTGAGATTGAATATGTATACGAGCTCAGGCTTGACCCTGAAACTACCCCGAAACCT GGGGATAATGAGGTCGAGGAATTCAAGTTGTTGTCGATTCCGGAGGTGCAGGCGGCTTTGGCGCGCGGCGAGTTC AAGCCCAATTGTGCTAATATCATGATTGATTTCTTTGTGAGGCATGGGCTGCTGACGCCAGAGAATGAGCCGGAT TTCTTGCAGATTGTTGCTAGATTGCATCGTCGCTTAGAATACCCGACTGCTTCGCATTGCGCAAGGTAG |
| Transcript | >Pro_DTO377G3_2|g221.t1 ATGGGCAAATCCAATTTAGACCTGGTCGGCGAATGCGATAACTTCCCCTACTACGAGGATGATCGCGACGTCTAC ACGGAGAACCTGAAGAACTATCATGCATTCAAAGTCTCCGGATACGACTGTACACTCGGTTATATTCTCAATGCA GTCGTTGAGAAATTTCCCTGGTCGGAAAAGAGCTGGGCCATTGACTCGACTGCGCAGACCGTGACGCTAGTGACA CCGGAGGGAGCCACCCCGGCACACCGGAGCAAGCTCGTCGCAGCAGACATAGCCGAAGCCGTGAAACAAAAAAAG TTCGAAGTGCTGCAAGGCTGGCGCAACGAGACCTACGCAGTCTACGGCCCGGGCGGAGAATTCCTACTCGAGATG GAGCGCGCTGCGACCCCACTCTTCGGCATCGTATCCTACGGCGCCCATCTTACGGGCTACGTTCAGGATGAATCC GGTATCAAGATCTGGGTCCCACGCCGCGCAAAGAACAAGCAGACCTACCCAAGCCTCCTTGATAACACCGTCGCC GGCGGTATGTGCACCGGCGAGACGCCGTTTGAGTGTATAGTCCGCGAAGCTATGGAAGAGGCATCCTTGCCCGAG TCGGTGGTGCGCGCTGCGACTGTCTCCGTGGGCTGTGTTACGTACTCACATGTACGGGATGTACGAGCGGGCGGC GAGACGGGCCTCATTCAGCCTGAGATTGAATATGTATACGAGCTCAGGCTTGACCCTGAAACTACCCCGAAACCT GGGGATAATGAGGTCGAGGAATTCAAGTTGTTGTCGATTCCGGAGGTGCAGGCGGCTTTGGCGCGCGGCGAGTTC AAGCCCAATTGTGCTAATATCATGATTGATTTCTTTGTGAGGCATGGGCTGCTGACGCCAGAGAATGAGCCGGAT TTCTTGCAGATTGTTGCTAGATTGCATCGTCGCTTAGAATACCCGACTGCTTCGCATTGCGCAAGGTAG |
| Gene | >Pro_DTO377G3_2|g221.t1 ATGGGCAAATCCAATTTAGACCTGGTCGGCGAATGCGATAAGTAAAGCTGTCCCAACTCGGTTTCTCTCAATTCG CGTTTTCTCTTACACCCCACCCCGCAGCTTCCCCTACTACGAGGATGATCGCGACGTCTACACGGAGAACCTGAA GAACTATCATGCATTCAAAGTCTCCGGATACGACTGTACACTCGGTTATATTCTCAATGCAGTCGTTGAGAAATT TCCCTGGTCGGAAAAGAGCTGGGCCATTGACTCGACTGCGCAGACCGTGACGCTAGTGACACCGGAGGGAGCCAC CCCGGCACACCGGAGCAAGCTCGTCGCAGCAGACATAGCCGAAGCCGTGAAACAAAAAAAGTTCGAAGTGCTGCA AGGCTGGCGCAACGAGACCTACGCAGTCTACGGCCCGGGCGGAGAATTCCTACTCGAGATGGAGCGCGCTGCGAC CCCACTCTTCGGCATCGTATCCTACGGCGCCCATCTTACGGGCTACGTTCAGGATGAATCCGGTATCAAGATCTG GGTCCCACGCCGCGCAAAGAACAAGCAGACCTACCCAAGCCTCCTTGATAACACCGTCGCCGGCGGTATGTGCAC CGGCGAGACGCCGTTTGAGTGTATAGTCCGCGAAGCTATGGAAGAGGCATCCTTGCCCGAGTCGGTGGTGCGCGC TGCGACTGTCTCCGTGGGCTGTGTTACGTACTCACATGTACGGGATGTACGAGCGGGCGGCGAGACGGGCCTCAT TCAGCCTGAGATTGAATATGTATACGAGCTCAGGCTTGACCCTGAAACTACCCCGAAACCTGGGGATAATGAGGT CGAGGAATTCAAGTTGTTGTCGATTCCGGAGGTGCAGGCGGCTTTGGCGCGCGGCGAGTTCAAGCCCAATTGTGC TAATATCATGATTGATTTCTTTGTGAGGCATGGGCTGCTGACGCCAGAGAATGAGCCGGATTTCTTGCAGATTGT TGCTAGATTGCATCGTCGCTTAGAATACCCGACTGCTTCGCATTGCGCAAGGTAG |