© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2191.t1 |
| Gene name | |
| Location | scaffold_02:1894432..1895519 |
| Strand | - |
| Gene length (bp) | 1087 |
| Transcript length (bp) | 924 |
| Coding sequence length (bp) | 924 |
| Protein length (aa) | 308 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 4.0E-09 | 20 | 72 |
| PF04193 | PQ-loop | PQ loop repeat | 5.6E-13 | 175 | 229 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 34 | 19 |
| 2 | 47 | 69 | 22 |
| 3 | 95 | 117 | 22 |
| 4 | 143 | 165 | 22 |
| 5 | 169 | 191 | 22 |
| 6 | 203 | 225 | 22 |
| 7 | 235 | 257 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 74.07 | 43.38 | 104.76 |
| 5d_25C | Five days - 25 degrees Celsius | 79.01 | 46.69 | 111.32 |
| 7d_25C | Seven days - 25 degrees Celsius | 68.40 | 39.57 | 97.23 |
| 10d_25C | Ten days - 25 degrees Celsius | 68.26 | 39.72 | 96.80 |
| 7d_15C | Seven days - 15 degrees Celsius | 109.94 | 65.81 | 154.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 61.61 | 35.20 | 88.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.845281 | no |
| 3d_25C | 7d_25C | 0.805115 | no |
| 3d_25C | 7d_15C | 0.071858 | no |
| 3d_25C | 7d_30C | 0.501189 | no |
| 3d_25C | 10d_25C | 0.797596 | no |
| 5d_25C | 7d_25C | 0.617050 | no |
| 5d_25C | 7d_15C | 0.154535 | no |
| 5d_25C | 7d_30C | 0.332648 | no |
| 5d_25C | 10d_25C | 0.608565 | no |
| 7d_25C | 7d_15C | 0.026584 | yes |
| 7d_25C | 7d_30C | 0.741224 | no |
| 7d_25C | 10d_25C | 0.995523 | no |
| 7d_15C | 7d_30C | 0.008807 | yes |
| 7d_15C | 10d_25C | 0.032838 | yes |
| 7d_30C | 10d_25C | 0.746103 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2191.t1 MDSLTPYCRELASPGIFQTALSIQIILGILLSYLPQHIRIIARRSSFGISPYFILLGVTSGTSAFANILVFPSTA QDVACCRDISGFACFAGLLGVFQMAMQWLAFFSILLLFVIYFPRATSPTDPVGSVSSTSSGPTYRTALIVTGICL LHALVTIIISLAVELRYPAAVATWANFLGILAAILASIQYFPQIYTTFRLRCVGSLSIPMMCIQTPGSLVWAASL AARKGWSGWSIWGVLVVTACLQGTLLTMAIYFEYFGSNNKGKAGHVDQTGEPDESAPADESAQQEPVHEERPSEE TPLLQSQ* |
| Coding | >Pro_DTO377G3_2|g2191.t1 ATGGACTCATTAACACCCTACTGCCGCGAGCTGGCCTCGCCAGGCATCTTCCAAACTGCTCTATCTATCCAGATT ATCCTCGGGATCCTCCTCTCATACCTCCCCCAACACATCCGTATCATCGCCCGGCGAAGCTCCTTCGGTATCTCA CCATACTTTATCCTCCTAGGTGTAACATCAGGGACCTCAGCTTTCGCCAATATCCTGGTATTCCCATCCACCGCA CAAGATGTCGCCTGCTGCCGGGATATCAGCGGATTCGCTTGCTTCGCAGGGCTACTGGGTGTATTCCAGATGGCC ATGCAATGGCTTGCTTTCTTTTCTATTCTTTTGCTATTCGTGATCTACTTCCCGCGCGCTACATCCCCCACAGAC CCGGTGGGCAGTGTGTCTTCCACCTCCAGCGGACCGACGTACCGCACCGCGCTCATCGTAACGGGGATATGTCTA CTGCACGCGCTCGTTACAATTATAATTTCCCTAGCGGTTGAGCTACGCTACCCGGCCGCTGTTGCGACCTGGGCT AACTTCCTCGGTATCCTGGCTGCGATCCTCGCGTCGATCCAGTACTTCCCGCAGATATACACTACCTTCCGGCTG CGTTGCGTGGGGAGCTTGAGTATCCCCATGATGTGCATCCAGACGCCCGGAAGTCTTGTCTGGGCTGCTAGTTTG GCTGCCCGTAAGGGTTGGAGTGGCTGGAGTATCTGGGGCGTGCTTGTTGTCACGGCTTGCTTGCAGGGTACCTTG TTGACGATGGCAATCTATTTTGAGTACTTTGGATCCAACAACAAGGGGAAAGCTGGGCACGTTGATCAAACCGGG GAGCCCGATGAGTCGGCTCCTGCTGATGAGAGCGCTCAGCAAGAACCTGTGCATGAGGAGCGACCATCTGAGGAG ACGCCGTTGCTTCAGAGCCAGTGA |
| Transcript | >Pro_DTO377G3_2|g2191.t1 ATGGACTCATTAACACCCTACTGCCGCGAGCTGGCCTCGCCAGGCATCTTCCAAACTGCTCTATCTATCCAGATT ATCCTCGGGATCCTCCTCTCATACCTCCCCCAACACATCCGTATCATCGCCCGGCGAAGCTCCTTCGGTATCTCA CCATACTTTATCCTCCTAGGTGTAACATCAGGGACCTCAGCTTTCGCCAATATCCTGGTATTCCCATCCACCGCA CAAGATGTCGCCTGCTGCCGGGATATCAGCGGATTCGCTTGCTTCGCAGGGCTACTGGGTGTATTCCAGATGGCC ATGCAATGGCTTGCTTTCTTTTCTATTCTTTTGCTATTCGTGATCTACTTCCCGCGCGCTACATCCCCCACAGAC CCGGTGGGCAGTGTGTCTTCCACCTCCAGCGGACCGACGTACCGCACCGCGCTCATCGTAACGGGGATATGTCTA CTGCACGCGCTCGTTACAATTATAATTTCCCTAGCGGTTGAGCTACGCTACCCGGCCGCTGTTGCGACCTGGGCT AACTTCCTCGGTATCCTGGCTGCGATCCTCGCGTCGATCCAGTACTTCCCGCAGATATACACTACCTTCCGGCTG CGTTGCGTGGGGAGCTTGAGTATCCCCATGATGTGCATCCAGACGCCCGGAAGTCTTGTCTGGGCTGCTAGTTTG GCTGCCCGTAAGGGTTGGAGTGGCTGGAGTATCTGGGGCGTGCTTGTTGTCACGGCTTGCTTGCAGGGTACCTTG TTGACGATGGCAATCTATTTTGAGTACTTTGGATCCAACAACAAGGGGAAAGCTGGGCACGTTGATCAAACCGGG GAGCCCGATGAGTCGGCTCCTGCTGATGAGAGCGCTCAGCAAGAACCTGTGCATGAGGAGCGACCATCTGAGGAG ACGCCGTTGCTTCAGAGCCAGTGA |
| Gene | >Pro_DTO377G3_2|g2191.t1 ATGGACTCATTAACACCCTACTGCCGCGAGCTGGCCTCGCCAGGCATCTTCCAAACTGCTCTATCTATGTACGTG CCCCTAGAATTAAAATCAGTCCCCAGTCACTGACGTACCATAGCCAGATTATCCTCGGGATCCTCCTCTCATACC TCCCCCAACACATCCGTATCATCGCCCGGCGAAGCTCCTTCGGTATCTCACCATACTTTATCCTCCTAGGTGTAA CATCAGGGACCTCAGCTTTCGCCAATATCCTGGTATTCCCATCCACCGCACAAGATGTCGCCTGCTGCCGGGATA TCAGCGGATTCGCTTGCTTCGCAGGGCTACTGGGTGTATTCCAGATGGCCATGCAATGGCTTGCTTTCTTTTCTA TGTGAGTCGAACGCAGCGCTGATTTATATCTGATTCCGAATTCCCGATTGAACACCCACACCCATACCATACCAT ACCATACCCACGCGAGCTTGTCTGACCATATCTACATAGTCTTTTGCTATTCGTGATCTACTTCCCGCGCGCTAC ATCCCCCACAGACCCGGTGGGCAGTGTGTCTTCCACCTCCAGCGGACCGACGTACCGCACCGCGCTCATCGTAAC GGGGATATGTCTACTGCACGCGCTCGTTACAATTATAATTTCCCTAGCGGTTGAGCTACGCTACCCGGCCGCTGT TGCGACCTGGGCTAACTTCCTCGGTATCCTGGCTGCGATCCTCGCGTCGATCCAGTACTTCCCGCAGATATACAC TACCTTCCGGCTGCGTTGCGTGGGGAGCTTGAGTATCCCCATGATGTGCATCCAGACGCCCGGAAGTCTTGTCTG GGCTGCTAGTTTGGCTGCCCGTAAGGGTTGGAGTGGCTGGAGTATCTGGGGCGTGCTTGTTGTCACGGCTTGCTT GCAGGGTACCTTGTTGACGATGGCAATCTATTTTGAGTACTTTGGATCCAACAACAAGGGGAAAGCTGGGCACGT TGATCAAACCGGGGAGCCCGATGAGTCGGCTCCTGCTGATGAGAGCGCTCAGCAAGAACCTGTGCATGAGGAGCG ACCATCTGAGGAGACGCCGTTGCTTCAGAGCCAGTGA |