© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2169.t1 |
| Gene name | |
| Location | scaffold_02:1830372..1831103 |
| Strand | - |
| Gene length (bp) | 731 |
| Transcript length (bp) | 438 |
| Coding sequence length (bp) | 438 |
| Protein length (aa) | 146 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7.1E-11 | 9 | 59 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.79 | 4.48 | 29.10 |
| 5d_25C | Five days - 25 degrees Celsius | 15.21 | 3.82 | 26.60 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.71 | 3.97 | 27.44 |
| 10d_25C | Ten days - 25 degrees Celsius | 17.91 | 4.94 | 30.88 |
| 7d_15C | Seven days - 15 degrees Celsius | 15.73 | 2.96 | 28.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 35.25 | 11.94 | 58.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.868475 | no |
| 3d_25C | 7d_25C | 0.914919 | no |
| 3d_25C | 7d_15C | 0.922904 | no |
| 3d_25C | 7d_30C | 0.056346 | no |
| 3d_25C | 10d_25C | 0.917389 | no |
| 5d_25C | 7d_25C | 0.961614 | no |
| 5d_25C | 7d_15C | 0.959394 | no |
| 5d_25C | 7d_30C | 0.027278 | yes |
| 5d_25C | 10d_25C | 0.768806 | no |
| 7d_25C | 7d_15C | 0.996239 | no |
| 7d_25C | 7d_30C | 0.037779 | yes |
| 7d_25C | 10d_25C | 0.815420 | no |
| 7d_15C | 7d_30C | 0.059343 | no |
| 7d_15C | 10d_25C | 0.836569 | no |
| 7d_30C | 10d_25C | 0.081239 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2169.t1 MTEVSSTRLYLGNLPRNVTKSDIEEHFSSHGSGKITEIKLMNGFGFIEYDDQLDARDIVPAFRMPPHDFPPNDPS LIHTTDGSDFKGERLTVQFARGPRRKEAFPGPPDRNALPRPRRTMFRMQISGLPETSWQVSSKSIPSRSS* |
| Coding | >Pro_DTO377G3_2|g2169.t1 ATGACTGAGGTATCCTCAACCCGCCTTTATCTTGGGAATCTTCCCCGCAATGTGACCAAAAGCGACATCGAGGAA CATTTCAGCAGCCATGGCTCCGGTAAGATTACGGAGATCAAATTGATGAACGGTTTCGGCTTCATCGAATACGAC GACCAGCTGGATGCCAGAGATATTGTGCCCGCCTTCCGTATGCCCCCCCATGACTTTCCACCCAATGACCCCTCG CTTATCCATACTACAGACGGCAGTGACTTCAAAGGCGAGCGACTCACCGTTCAGTTTGCGCGCGGGCCTCGTCGC AAGGAAGCCTTCCCGGGACCGCCTGACCGCAACGCGCTCCCTCGTCCACGTCGCACTATGTTCCGCATGCAGATT TCCGGTCTTCCAGAAACAAGTTGGCAGGTTAGCAGCAAGTCCATTCCTTCCCGGAGTTCCTGA |
| Transcript | >Pro_DTO377G3_2|g2169.t1 ATGACTGAGGTATCCTCAACCCGCCTTTATCTTGGGAATCTTCCCCGCAATGTGACCAAAAGCGACATCGAGGAA CATTTCAGCAGCCATGGCTCCGGTAAGATTACGGAGATCAAATTGATGAACGGTTTCGGCTTCATCGAATACGAC GACCAGCTGGATGCCAGAGATATTGTGCCCGCCTTCCGTATGCCCCCCCATGACTTTCCACCCAATGACCCCTCG CTTATCCATACTACAGACGGCAGTGACTTCAAAGGCGAGCGACTCACCGTTCAGTTTGCGCGCGGGCCTCGTCGC AAGGAAGCCTTCCCGGGACCGCCTGACCGCAACGCGCTCCCTCGTCCACGTCGCACTATGTTCCGCATGCAGATT TCCGGTCTTCCAGAAACAAGTTGGCAGGTTAGCAGCAAGTCCATTCCTTCCCGGAGTTCCTGA |
| Gene | >Pro_DTO377G3_2|g2169.t1 ATGACTGAGGTATCCTCAACCCGCCTTTATCTTGGGAATCTTCCCCGCAATGGTATGCTGGTACCTGACTGTCCC TCTTCCCTGAGTTTTGGAGAACACACGCACCACCGTGCATAATCTAGTCGCTTCGCTGATCCTCTGAGTCCCATG TGCTCTGACCTCTCGTATGCTCATGTGGAATGCTACCCACATGGAACAGCGCCTCGGGTGGCCACCTAACCGGTG CTTTTGGAGTCACTTTGGAGAAATGATGCGCTAACCTCTTTCTGCTTTTATTATCACAGTGACCAAAAGCGACAT CGAGGAACATTTCAGCAGCCATGGCTCCGGTAAGATTACGGAGATCAAATTGATGAACGGTTTCGGCTTCATCGA ATACGACGACCAGCTGGATGCCAGAGATATTGTGCCCGGTAAGAATGGCTTATCAGATTCCCTTCATCGCGCAAA GTCGCTAACATTATTTTCTTATAGCCTTCCGTATGCCCCCCCATGACTTTCCACCCAATGACCCCTCGCTTATCC ATACTACAGACGGCAGTGACTTCAAAGGCGAGCGACTCACCGTTCAGTTTGCGCGCGGGCCTCGTCGCAAGGAAG CCTTCCCGGGACCGCCTGACCGCAACGCGCTCCCTCGTCCACGTCGCACTATGTTCCGCATGCAGATTTCCGGTC TTCCAGAAACAAGTTGGCAGGTTAGCAGCAAGTCCATTCCTTCCCGGAGTTCCTGA |