Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g2169.t1
Gene name
Locationscaffold_02:1830372..1831103
Strand-
Gene length (bp)731
Transcript length (bp)438
Coding sequence length (bp)438
Protein length (aa) 146

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.1E-11 9 59

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 67 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 16.79 4.48 29.10
5d_25C Five days - 25 degrees Celsius 15.21 3.82 26.60
7d_25C Seven days - 25 degrees Celsius 15.71 3.97 27.44
10d_25C Ten days - 25 degrees Celsius 17.91 4.94 30.88
7d_15C Seven days - 15 degrees Celsius 15.73 2.96 28.51
7d_30C Seven days - 30 degrees Celsius 35.25 11.94 58.56

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.868475 no
3d_25C 7d_25C 0.914919 no
3d_25C 7d_15C 0.922904 no
3d_25C 7d_30C 0.056346 no
3d_25C 10d_25C 0.917389 no
5d_25C 7d_25C 0.961614 no
5d_25C 7d_15C 0.959394 no
5d_25C 7d_30C 0.027278 yes
5d_25C 10d_25C 0.768806 no
7d_25C 7d_15C 0.996239 no
7d_25C 7d_30C 0.037779 yes
7d_25C 10d_25C 0.815420 no
7d_15C 7d_30C 0.059343 no
7d_15C 10d_25C 0.836569 no
7d_30C 10d_25C 0.081239 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g2169.t1
MTEVSSTRLYLGNLPRNVTKSDIEEHFSSHGSGKITEIKLMNGFGFIEYDDQLDARDIVPAFRMPPHDFPPNDPS
LIHTTDGSDFKGERLTVQFARGPRRKEAFPGPPDRNALPRPRRTMFRMQISGLPETSWQVSSKSIPSRSS*
Coding >Pro_DTO377G3_2|g2169.t1
ATGACTGAGGTATCCTCAACCCGCCTTTATCTTGGGAATCTTCCCCGCAATGTGACCAAAAGCGACATCGAGGAA
CATTTCAGCAGCCATGGCTCCGGTAAGATTACGGAGATCAAATTGATGAACGGTTTCGGCTTCATCGAATACGAC
GACCAGCTGGATGCCAGAGATATTGTGCCCGCCTTCCGTATGCCCCCCCATGACTTTCCACCCAATGACCCCTCG
CTTATCCATACTACAGACGGCAGTGACTTCAAAGGCGAGCGACTCACCGTTCAGTTTGCGCGCGGGCCTCGTCGC
AAGGAAGCCTTCCCGGGACCGCCTGACCGCAACGCGCTCCCTCGTCCACGTCGCACTATGTTCCGCATGCAGATT
TCCGGTCTTCCAGAAACAAGTTGGCAGGTTAGCAGCAAGTCCATTCCTTCCCGGAGTTCCTGA
Transcript >Pro_DTO377G3_2|g2169.t1
ATGACTGAGGTATCCTCAACCCGCCTTTATCTTGGGAATCTTCCCCGCAATGTGACCAAAAGCGACATCGAGGAA
CATTTCAGCAGCCATGGCTCCGGTAAGATTACGGAGATCAAATTGATGAACGGTTTCGGCTTCATCGAATACGAC
GACCAGCTGGATGCCAGAGATATTGTGCCCGCCTTCCGTATGCCCCCCCATGACTTTCCACCCAATGACCCCTCG
CTTATCCATACTACAGACGGCAGTGACTTCAAAGGCGAGCGACTCACCGTTCAGTTTGCGCGCGGGCCTCGTCGC
AAGGAAGCCTTCCCGGGACCGCCTGACCGCAACGCGCTCCCTCGTCCACGTCGCACTATGTTCCGCATGCAGATT
TCCGGTCTTCCAGAAACAAGTTGGCAGGTTAGCAGCAAGTCCATTCCTTCCCGGAGTTCCTGA
Gene >Pro_DTO377G3_2|g2169.t1
ATGACTGAGGTATCCTCAACCCGCCTTTATCTTGGGAATCTTCCCCGCAATGGTATGCTGGTACCTGACTGTCCC
TCTTCCCTGAGTTTTGGAGAACACACGCACCACCGTGCATAATCTAGTCGCTTCGCTGATCCTCTGAGTCCCATG
TGCTCTGACCTCTCGTATGCTCATGTGGAATGCTACCCACATGGAACAGCGCCTCGGGTGGCCACCTAACCGGTG
CTTTTGGAGTCACTTTGGAGAAATGATGCGCTAACCTCTTTCTGCTTTTATTATCACAGTGACCAAAAGCGACAT
CGAGGAACATTTCAGCAGCCATGGCTCCGGTAAGATTACGGAGATCAAATTGATGAACGGTTTCGGCTTCATCGA
ATACGACGACCAGCTGGATGCCAGAGATATTGTGCCCGGTAAGAATGGCTTATCAGATTCCCTTCATCGCGCAAA
GTCGCTAACATTATTTTCTTATAGCCTTCCGTATGCCCCCCCATGACTTTCCACCCAATGACCCCTCGCTTATCC
ATACTACAGACGGCAGTGACTTCAAAGGCGAGCGACTCACCGTTCAGTTTGCGCGCGGGCCTCGTCGCAAGGAAG
CCTTCCCGGGACCGCCTGACCGCAACGCGCTCCCTCGTCCACGTCGCACTATGTTCCGCATGCAGATTTCCGGTC
TTCCAGAAACAAGTTGGCAGGTTAGCAGCAAGTCCATTCCTTCCCGGAGTTCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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