© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2168.t1 |
| Gene name | |
| Location | scaffold_02:1829345..1830096 |
| Strand | - |
| Gene length (bp) | 751 |
| Transcript length (bp) | 570 |
| Coding sequence length (bp) | 570 |
| Protein length (aa) | 190 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-07 | 7 | 54 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 36.99 | 15.68 | 58.31 |
| 5d_25C | Five days - 25 degrees Celsius | 29.22 | 11.40 | 47.03 |
| 7d_25C | Seven days - 25 degrees Celsius | 26.29 | 9.46 | 43.12 |
| 10d_25C | Ten days - 25 degrees Celsius | 28.89 | 11.31 | 46.47 |
| 7d_15C | Seven days - 15 degrees Celsius | 30.99 | 10.97 | 51.00 |
| 7d_30C | Seven days - 30 degrees Celsius | 55.30 | 25.92 | 84.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.562940 | no |
| 3d_25C | 7d_25C | 0.370941 | no |
| 3d_25C | 7d_15C | 0.685715 | no |
| 3d_25C | 7d_30C | 0.224791 | no |
| 3d_25C | 10d_25C | 0.534817 | no |
| 5d_25C | 7d_25C | 0.831730 | no |
| 5d_25C | 7d_15C | 0.912417 | no |
| 5d_25C | 7d_30C | 0.039566 | yes |
| 5d_25C | 10d_25C | 0.983121 | no |
| 7d_25C | 7d_15C | 0.727022 | no |
| 7d_25C | 7d_30C | 0.019624 | yes |
| 7d_25C | 10d_25C | 0.850393 | no |
| 7d_15C | 7d_30C | 0.069586 | no |
| 7d_15C | 10d_25C | 0.891133 | no |
| 7d_30C | 10d_25C | 0.036724 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2168.t1 MGDLKDFARQSGLDVVYSETGREQGRGFVEFETANDLKTAVEKLDQREFKGSVVSCVADIQNFEERPVRDPYRSR SPPRRPYPAPMEEYDRRIPPPRGYSPREHYRERSPIPIRRDPYYERDGYARRTPPRPRMEDYPPPRRPYEDPYEA RPPPPPRHYDDPYLAARGYGRPRSPPRGEYVPYDRPRYW* |
| Coding | >Pro_DTO377G3_2|g2168.t1 ATGGGAGACTTGAAAGACTTCGCCCGCCAGTCTGGACTGGACGTTGTTTACTCTGAAACTGGCCGAGAACAGGGC AGAGGGTTTGTGGAATTTGAAACCGCCAACGACCTGAAGACCGCCGTGGAGAAACTGGACCAGCGAGAGTTCAAG GGCTCCGTCGTATCTTGTGTCGCCGATATTCAGAACTTTGAGGAACGCCCCGTTCGTGACCCATACCGGTCCCGT TCCCCACCACGTCGCCCCTACCCTGCCCCCATGGAGGAGTACGACCGCCGGATCCCTCCCCCACGTGGCTACAGT CCGCGGGAGCACTACCGTGAGCGGTCGCCGATTCCTATCCGCCGCGATCCCTACTATGAACGGGATGGCTATGCC CGCCGGACTCCCCCTCGCCCTCGGATGGAAGACTACCCACCCCCACGTCGTCCCTACGAAGACCCCTACGAGGCC CGGCCTCCCCCACCCCCTCGCCACTATGATGATCCCTACCTAGCTGCCCGGGGTTATGGTCGTCCTCGCTCTCCA CCAAGAGGCGAGTATGTGCCTTACGACCGTCCTCGCTACTGGTAG |
| Transcript | >Pro_DTO377G3_2|g2168.t1 ATGGGAGACTTGAAAGACTTCGCCCGCCAGTCTGGACTGGACGTTGTTTACTCTGAAACTGGCCGAGAACAGGGC AGAGGGTTTGTGGAATTTGAAACCGCCAACGACCTGAAGACCGCCGTGGAGAAACTGGACCAGCGAGAGTTCAAG GGCTCCGTCGTATCTTGTGTCGCCGATATTCAGAACTTTGAGGAACGCCCCGTTCGTGACCCATACCGGTCCCGT TCCCCACCACGTCGCCCCTACCCTGCCCCCATGGAGGAGTACGACCGCCGGATCCCTCCCCCACGTGGCTACAGT CCGCGGGAGCACTACCGTGAGCGGTCGCCGATTCCTATCCGCCGCGATCCCTACTATGAACGGGATGGCTATGCC CGCCGGACTCCCCCTCGCCCTCGGATGGAAGACTACCCACCCCCACGTCGTCCCTACGAAGACCCCTACGAGGCC CGGCCTCCCCCACCCCCTCGCCACTATGATGATCCCTACCTAGCTGCCCGGGGTTATGGTCGTCCTCGCTCTCCA CCAAGAGGCGAGTATGTGCCTTACGACCGTCCTCGCTACTGGTAG |
| Gene | >Pro_DTO377G3_2|g2168.t1 ATGGGAGTGCTTACATTTTCTCTCACCACATTTACCGGACATACCTTTCCTGGACCTGGACTCACCATACATTCA ATAGGACTTGAAAGACTTCGCCCGCCAGTCTGGACTGGACGTTGTTTACTCTGAAACTGGCCGAGAACAGGGCAG AGGGTGGGTGAACCATTGTATTCCGAGACCCTTCCAATCCATTGACATTTGAACAAGGTTTGTGGAATTTGAAAC CGCCAACGACCTGAAGACCGCCGTGGAGAAACTGGACCAGCGAGAGTTCAAGGGCTCCGTCGTATCTTGTGTCGC CGATGTAAGCGTCCAACCTGGCTCGGACCTAGAGGAACCCCCTCTCACCAAATCCCAGATTCAGAACTTTGAGGA ACGCCCCGTTCGTGACCCATACCGGTCCCGTTCCCCACCACGTCGCCCCTACCCTGCCCCCATGGAGGAGTACGA CCGCCGGATCCCTCCCCCACGTGGCTACAGTCCGCGGGAGCACTACCGTGAGCGGTCGCCGATTCCTATCCGCCG CGATCCCTACTATGAACGGGATGGCTATGCCCGCCGGACTCCCCCTCGCCCTCGGATGGAAGACTACCCACCCCC ACGTCGTCCCTACGAAGACCCCTACGAGGCCCGGCCTCCCCCACCCCCTCGCCACTATGATGATCCCTACCTAGC TGCCCGGGGTTATGGTCGTCCTCGCTCTCCACCAAGAGGCGAGTATGTGCCTTACGACCGTCCTCGCTACTGGTA G |