© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g2150.t1 |
| Gene name | |
| Location | scaffold_02:1779746..1780674 |
| Strand | - |
| Gene length (bp) | 928 |
| Transcript length (bp) | 450 |
| Coding sequence length (bp) | 450 |
| Protein length (aa) | 150 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04281 | Tom22 | Mitochondrial import receptor subunit Tom22 | 1.1E-51 | 1 | 135 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005741 | mitochondrial outer membrane | Yes |
| GO:0006886 | intracellular protein transport | Yes |
| GO:0019867 | outer membrane | No |
| GO:0046907 | intracellular transport | No |
| GO:0098588 | bounding membrane of organelle | No |
| GO:0006810 | transport | No |
| GO:0031966 | mitochondrial membrane | No |
| GO:0008150 | biological_process | No |
| GO:0015031 | protein transport | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0051641 | cellular localization | No |
| GO:0071702 | organic substance transport | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0031968 | organelle outer membrane | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0031090 | organelle membrane | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0051179 | localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008104 | protein localization | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0033036 | macromolecule localization | No |
| GO:0009987 | cellular process | No |
| GO:0016020 | membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 94 | 113 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 405.34 | 247.24 | 563.43 |
| 5d_25C | Five days - 25 degrees Celsius | 341.01 | 207.21 | 474.81 |
| 7d_25C | Seven days - 25 degrees Celsius | 325.46 | 197.90 | 453.01 |
| 10d_25C | Ten days - 25 degrees Celsius | 340.74 | 207.30 | 474.18 |
| 7d_15C | Seven days - 15 degrees Celsius | 385.96 | 237.00 | 534.92 |
| 7d_30C | Seven days - 30 degrees Celsius | 301.80 | 181.88 | 421.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.503362 | no |
| 3d_25C | 7d_25C | 0.377971 | no |
| 3d_25C | 7d_15C | 0.882216 | no |
| 3d_25C | 7d_30C | 0.204929 | no |
| 3d_25C | 10d_25C | 0.498471 | no |
| 5d_25C | 7d_25C | 0.888911 | no |
| 5d_25C | 7d_15C | 0.664224 | no |
| 5d_25C | 7d_30C | 0.671042 | no |
| 5d_25C | 10d_25C | 0.997942 | no |
| 7d_25C | 7d_15C | 0.521640 | no |
| 7d_25C | 7d_30C | 0.809273 | no |
| 7d_25C | 10d_25C | 0.888109 | no |
| 7d_15C | 7d_30C | 0.307034 | no |
| 7d_15C | 10d_25C | 0.651841 | no |
| 7d_30C | 10d_25C | 0.667475 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g2150.t1 MVKLTEVEDEHFTDKPTATKHDALLVSDDEDDYSDTDSEISDEEDIELEAESLYERIAALKDIVPPSARRNVSST VSSITNLTKATFSFSGKALWIISTSAFLLGVPFALAYAEEEQYIQMEREQGMIKGANEMLIPGSEPEKTAQPTL* |
| Coding | >Pro_DTO377G3_2|g2150.t1 ATGGTCAAGCTCACTGAAGTCGAAGACGAGCACTTCACCGATAAGCCCACTGCCACCAAACACGATGCTCTTTTG GTCTCCGATGATGAGGATGACTACTCAGACACTGACTCCGAGATCTCCGACGAGGAAGATATCGAGCTCGAGGCT GAGTCGCTCTACGAGCGTATCGCCGCTCTGAAAGACATTGTTCCCCCATCCGCCCGCCGCAACGTCTCCAGCACC GTCTCTTCCATCACAAACCTCACCAAGGCCACCTTTTCGTTCAGCGGCAAGGCCCTCTGGATTATCAGCACCAGT GCTTTCCTGCTCGGTGTGCCATTCGCTTTGGCCTACGCCGAGGAGGAGCAGTACATCCAGATGGAGCGCGAGCAG GGAATGATCAAGGGAGCTAACGAGATGCTCATCCCCGGCTCCGAACCCGAGAAGACGGCTCAACCTACTCTGTAA |
| Transcript | >Pro_DTO377G3_2|g2150.t1 ATGGTCAAGCTCACTGAAGTCGAAGACGAGCACTTCACCGATAAGCCCACTGCCACCAAACACGATGCTCTTTTG GTCTCCGATGATGAGGATGACTACTCAGACACTGACTCCGAGATCTCCGACGAGGAAGATATCGAGCTCGAGGCT GAGTCGCTCTACGAGCGTATCGCCGCTCTGAAAGACATTGTTCCCCCATCCGCCCGCCGCAACGTCTCCAGCACC GTCTCTTCCATCACAAACCTCACCAAGGCCACCTTTTCGTTCAGCGGCAAGGCCCTCTGGATTATCAGCACCAGT GCTTTCCTGCTCGGTGTGCCATTCGCTTTGGCCTACGCCGAGGAGGAGCAGTACATCCAGATGGAGCGCGAGCAG GGAATGATCAAGGGAGCTAACGAGATGCTCATCCCCGGCTCCGAACCCGAGAAGACGGCTCAACCTACTCTGTAA |
| Gene | >Pro_DTO377G3_2|g2150.t1 ATGGTCAAGCTCACTGAAGTCGAAGACGAGCACTTCACCGATAAGCCCACTGCCACCAAACACGATGCTCTTTTG GTCTCCGATGATGAGGATGACTACTCAGACACTGGTTAGTACCGAAACCCGAACGCCCATAATCAGACGAAACTC GCATCGCGCCATTGTCATTTGCATGGGGAATCGCTTTGATGGGAAGATATTCTGCTCCCTGAAGTTCCTCCTATC ATCCCAGTCCCCAATCCCAATCCTCAACAATGCGACATCGAAACCCAGAAATGAACACTGGTCTGAAATCAACAT AAAGTACCGTATCTAACATGGGCATCAATGCAAAATAGACTCCGAGATCTCCGACGAGGAAGATATCGAGCTCGA GGCTGAGTCGCTCTACGAGCGTATCGCCGCTCTGAAAGACATTGTTCCCCCATCCGCCCGCCGCAACGTCTCCAG CACCGTCTCTTCCATCACAAACCTCACCAAGGCCACCTTTTCGTTCAGCGGCAAGGCCCTCTGGATTATCAGCAC CAGTGCTTTCCTGCTCGGTGTGCCATTCGCTTTGGCCTACGCCGAGGAGGAGCAGTACATCCAGATGGAGCGCGA GCAGGGAATGATCAAGGGAGCTAACGAGGTATGTGTTTTACTTCTTTTTCACCTTTTTTGCTCCGGATTTTCCGG CATTGCAACAGTTATCTTGAATCCCCGATTCGTGCTGTCATTGGCACTATTGACACCGTGTACATTGCCTCGGGT ATTCGCATCTCGGCAATCTTCCATAATATTTCTCTTTCTCGACACTATCATCAAATGGCATTTTTTGCGCTCTTC GGCGGACTCTCAGTCTTTGAAACGATATACTAATTATGATTCCTACTCGCAGATGCTCATCCCCGGCTCCGAACC CGAGAAGACGGCTCAACCTACTCTGTAA |